mRNA_A-nodosum_M_contig10.129.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10.129.2
Unique NamemRNA_A-nodosum_M_contig10.129.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: D7FM45_ECTSI (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM45_ECTSI)

HSP 1 Score: 434 bits (1117), Expect = 1.890e-150
Identity = 216/252 (85.71%), Postives = 235/252 (93.25%), Query Frame = 1
Query:  436 MPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPEISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDLYKERGLVGGPRELNDDPDFGTFGGEGQRFGDIGGGGWGGGAGVDDDG 1191
            MPSSEPMVPY R+G+ VATWMPVSQ LQQSRIIMVGKFID++YANQLIAMLLYHEK DP KKISLYFN PGALIRPAL+VYDTLMHMGPE+STLNLGLATGMVSFLCAAGKRG+RYALPN+RFLMQRTGMEDPYQGQASDIGVEVQNVM+GNS+ME+ALQRITGHT+AKIH+DFQRDFYLSS+EAVQYGIIDEVLLPR K RQD+YKERG++GGPR LND+PDFGTFGGEGQR+GD  GGGW     V DDG
Sbjct:    1 MPSSEPMVPYTRDGSTVATWMPVSQCLQQSRIIMVGKFIDEEYANQLIAMLLYHEKNDPNKKISLYFNCPGALIRPALAVYDTLMHMGPELSTLNLGLATGMVSFLCAAGKRGQRYALPNSRFLMQRTGMEDPYQGQASDIGVEVQNVMRGNSKMEEALQRITGHTVAKIHEDFQRDFYLSSAEAVQYGIIDEVLLPREKTRQDMYKERGIMGGPRVLNDEPDFGTFGGEGQRYGDKTGGGWXXXXXVSDDG 252          
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: A0A835YH32_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH32_9STRA)

HSP 1 Score: 313 bits (802), Expect = 5.750e-102
Identity = 164/252 (65.08%), Postives = 198/252 (78.57%), Query Frame = 1
Query:  415 AKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPEISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDLYKERGLVGGPREL--NDDPDFGTFGGEGQRFGDIGGGGWG 1164
            A R  +RMPS+EP VPYK  G+  ATW+ V+QRLQ+SRI+MVGKFIDD+YANQLIAM+LY EKE   K +SLYFNSPGA +RPA++V+DT+  M    STLNLGLATGMVSFLCAAG +G+R+ALPNARFLMQRTGMED Y+GQASDIG+EV  ++K N+RME+AL  ITGHT  KI  DFQRDFYLS++EAVQYG+ID+VL+PR K R+ +   + L  G      + DP FG FGGE QR+G   GGGWG
Sbjct:   41 AYRQDIRMPSTEPQVPYKPPGSDQATWVGVNQRLQRSRILMVGKFIDDEYANQLIAMMLYLEKESRDKPVSLYFNSPGANLRPAMAVFDTMQQMAFPTSTLNLGLATGMVSFLCAAGDKGKRFALPNARFLMQRTGMEDAYRGQASDIGIEVGQMVKKNNRMEEALTAITGHTRDKIRADFQRDFYLSAAEAVQYGVIDKVLMPRDKTRK-MESTKDLQFGDNAFTRSQDPTFGEFGGEDQRYGGQKGGGWG 291          
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: A0A6H5L521_9PHAE (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L521_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 3.980e-90
Identity = 148/214 (69.16%), Postives = 171/214 (79.91%), Query Frame = 1
Query:  244 AASMITRRGWLILMLGVARAPYFSNAFISSHPP----LSRPLGRKSREMA-GERGVQAVSMAAKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPEISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEV 870
            +++  T  G  +L+   +R  +   AF+ S       L+   G+K + +    R    ++ A +RDV+RMPSSEPMVPY REG+ VATWMPVSQ LQQSRIIMVGKFID++YANQLIAMLLYHEK DP KKISLYFN PGALIRPAL+VYDTLMHMGPE+STLNLGLATGMVSFLCAAGKRG+RYALPN+RFLMQRTGMEDPYQGQASDIGVEV
Sbjct:    3 SSAWATLTGMSLLVAAASRC-WVCEAFVPSTAARAAALAATTGQKQQNLQLRRRSDVTLAAATRRDVVRMPSSEPMVPYTREGSTVATWMPVSQCLQQSRIIMVGKFIDEEYANQLIAMLLYHEKNDPNKKISLYFNCPGALIRPALAVYDTLMHMGPELSTLNLGLATGMVSFLCAAGKRGQRYALPNSRFLMQRTGMEDPYQGQASDIGVEV 215          
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: A0A7S2KWW7_9STRA (ATP-dependent Clp protease proteolytic subunit (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KWW7_9STRA)

HSP 1 Score: 242 bits (617), Expect = 1.100e-73
Identity = 131/252 (51.98%), Postives = 176/252 (69.84%), Query Frame = 1
Query:  427 VLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGP--EISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDL-YKERGLVGGPRELNDDPD--FGTFGG-EGQRFGDIGGGGWG 1164
            ++ MP   PMVP++  G+  A ++ +  RL + RI+++GKFID Q ANQ+I++LLY +KEDP KKI+LYFN PGA +RPAL+VYDT+M      +ISTLNLGLATGM S LC  G +G R A+PN+RFL+QR G+E P+QGQASDIG+EV N+ K N  ME+ L ++TG ++ ++  D +RDFYLSS EAV YG+ID VL+P+ K  + + YK     G    + DD D   G F G E QR+ D  GGG+G
Sbjct:   58 LVMMPQGTPMVPWQPPGSDYAQFVDIYSRLYRERIMLIGKFIDQQEANQIISILLYLKKEDPDKKITLYFNCPGAELRPALAVYDTIMQCKETCDISTLNLGLATGMASLLCGCGTKGMRAAMPNSRFLLQRVGLERPFQGQASDIGLEVSNMKKSNDNMERELAKMTGRSVTEVRNDMKRDFYLSSDEAVTYGLIDHVLVPKTKGTEIVEYKRDPWTGRAIPVTDDRDVDLGNFEGTEEQRYQDQKGGGFG 309          
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: A0A7S2BG56_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BG56_9STRA)

HSP 1 Score: 241 bits (616), Expect = 1.300e-73
Identity = 116/213 (54.46%), Postives = 165/213 (77.46%), Query Frame = 1
Query:  397 QAVSMAAKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPEISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGK 1035
            Q  ++ A+R  + MP++EPMVP+K +G +   ++P+SQRL + RI+++G F+D++ AN LIA+LLY +++DP K+ISLYFN PGAL++P L+VYDTL  M   I TLNLGLATGM +FLC+AG  G R+ LPNARFL+Q+TG++DP+QGQA DIG++V + +  N RM QAL ++TG+T  K+ +D  RDFYLS+ EA +YG+ID+VL+P  K
Sbjct:   44 QVTAVQARRSTVSMPTTEPMVPWKPQGMESHQFVPISQRLYRERIVILGNFLDEEAANNLIAVLLYMKQDDPNKQISLYFNVPGALLKPTLAVYDTLKSMECPIMTLNLGLATGMGAFLCSAGTPGLRFCLPNARFLLQKTGLDDPFQGQAVDIGLKVSDNIADNKRMAQALAQMTGNTYDKVAEDLNRDFYLSAFEAREYGLIDKVLIPERK 256          
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: F0Y3R0_AURAN (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3R0_AURAN)

HSP 1 Score: 233 bits (595), Expect = 1.200e-71
Identity = 119/230 (51.74%), Postives = 167/230 (72.61%), Query Frame = 1
Query:  346 SRPLGRKSREMAGERGVQAVSMAAKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPEISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGK 1035
            S+ +G    + A   G + ++ A++       S    VPY+  G+    ++ + QRL + RI++VG F+D++ AN LIA+LLY   EDP K IS+YFN PGAL++P L+VYDTL  +   ++T+NLGLATGM +FLC AG +G RYALPNARFLMQRTG++DP+QGQASDIG+ V+  ++ N RME+AL ++TG++I  IHQD +RDFYLS+ EAVQYG+ID+VL+P+ K
Sbjct:    3 SKAVGHSRHQAAPPAGGEGLAKASRY------SGRTSVPYQPPGSDSHMFVDIYQRLYRDRIMLVGNFLDEEQANSLIAVLLYLRFEDPKKPISIYFNVPGALMKPCLAVYDTLQTLECPVTTVNLGLATGMGAFLCGAGTKGCRYALPNARFLMQRTGLDDPFQGQASDIGLVVRENLRDNDRMEKALVKMTGNSIDVIHQDMKRDFYLSAHEAVQYGLIDKVLIPQPK 226          
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: A0A7S2WMH7_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WMH7_9STRA)

HSP 1 Score: 236 bits (601), Expect = 1.540e-71
Identity = 118/238 (49.58%), Postives = 172/238 (72.27%), Query Frame = 1
Query:  400 AVSMAAKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGP--EISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDLYKERGLVGGPRELNDDPDF 1107
            + S+ A R+ ++MP+S PMVPYK  G+  A ++ +  R+ + RI+ +GKFID+  AN++I+++LY  KEDP+  I+LYFN PGA++RPAL+VYD ++      EI+T+NLGL TGM +FLC +G +G R A+PN+RFL+QRTG++ P+QGQASDIG+EV N+ K N RME  L ++TG  ++++  D +RDFYLSS EAVQYG+ID+VLLP  + R    ++  L  G  E +DD  +
Sbjct:   48 STSLFATRETIKMPTSTPMVPYKPPGSDYAQFVDIYSRMYRDRIMFIGKFIDENAANEIISIILYLRKEDPSGPITLYFNVPGAMLRPALAVYDLIVQTRENCEINTVNLGLCTGMGAFLCGSGTKGRRCAMPNSRFLLQRTGLDAPFQGQASDIGLEVANLKKMNDRMEYELSKMTGQPVSQVQLDLKRDFYLSSEEAVQYGLIDKVLLPSPQKRATQGQDTDL--GAFEGDDDQKY 283          
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: A0A7S2WJC8_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJC8_9STRA)

HSP 1 Score: 234 bits (597), Expect = 5.260e-71
Identity = 124/236 (52.54%), Postives = 174/236 (73.73%), Query Frame = 1
Query:  421 RDVLRMPSSEPMVPYKREGA--QVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPE--ISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDLYKERGLVGGPRELNDDPDFGTF 1116
            R  + MPS+EPMVP+K  G   Q   ++P+SQRL + RII++G F+D+Q +N LIA LLY ++E+  K+ISLY N PGAL++P ++VYDTLM    E  I T+NLGLATGM +FLCAAG RG+R ALPN+RFL+Q+TG++DPYQGQA DIG++V++ +  N  M + L ++TGHT  KI +D  RDFYLSS EA +YG++D+VLLP+ K+  ++  +   + G R L +D +FG+F
Sbjct:   42 RSPISMPSTEPMVPWKPPGGGYQDTYFIPISQRLYRDRIIVLGDFLDEQRSNNLIATLLYLKQENKRKQISLYINIPGALMKPTMAVYDTLMTEFQETPIMTVNLGLATGMAAFLCAAGTRGKRCALPNSRFLLQKTGLDDPYQGQALDIGLKVRDNIVDNQNMARELAKLTGHTYDKIQRDLSRDFYLSSFEAREYGLVDKVLLPKIKNDLNVITD---LNGRRILMEDNNFGSF 274          
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: A0A6U3QDB9_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3QDB9_9STRA)

HSP 1 Score: 233 bits (593), Expect = 2.030e-70
Identity = 119/234 (50.85%), Postives = 165/234 (70.51%), Query Frame = 1
Query:  358 GRKSR-EMAGERGVQAVSMAAKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGPEISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDLYK 1056
            G  SR +++    VQ  ++ A+R    MPS EP+VPY     +   ++P+SQRL   R+I++G F+D++ AN LIA LLY +KED  KKISLY N PGAL++P+L+VYDTL  +   I+TLNLGLATGM +FLC AG +G R+ALPNARFL+Q+TG++DPYQGQA DIG++V + +  N R+     ++TG+ I K+ +D +RDFYLS+ EA +YG+ID VLLP  K   D  +
Sbjct:   31 GLSSRFDVSASARVQTTALNARRMTPSMPSGEPLVPYSPSAVEGHQYLPISQRLLMDRVIVLGSFLDEEQANNLIATLLYLQKEDREKKISLYMNIPGALLKPSLAVYDTLKSLKCPITTLNLGLATGMGAFLCGAGTKGYRFALPNARFLLQKTGLDDPYQGQAVDIGLKVADNIADNYRVAAEFAKMTGNPIDKVAKDLERDFYLSAFEAREYGLIDRVLLPEQKYNSDTSR 264          
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Match: A0A7R9YXR7_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YXR7_9STRA)

HSP 1 Score: 227 bits (579), Expect = 6.160e-68
Identity = 118/237 (49.79%), Postives = 161/237 (67.93%), Query Frame = 1
Query:  430 LRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFIDDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGP--EISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQASDIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYGIIDEVLLPRGKDRQDLYKERGLVGGPRELNDDPDFGTFGGEGQR 1134
            + MP+  PMVPYK  G   + ++ +  R+ + RI+ + +FID+  +N +I+ LLY  KEDP + ++LYFN PGAL+RP L+VYD L  +    EIST+NLGL TGM + LC AG +G+R A+PNARFL+QR GME P+QGQASDIG+EV NV   N R+E  + R+TG T A++ +D +RDFYLSS EAV+YG+ID+VLLP         ++R   GG      D D GTF GE ++
Sbjct:   78 ITMPTQTPMVPYKPPGQDYSQFIDLPSRMYRDRIMFISQFIDEDASNNIISTLLYLRKEDPNEPLNLYFNVPGALLRPGLAVYDLLCQLRQDCEISTVNLGLCTGMGALLCGAGTKGKRCAMPNARFLLQRVGMESPFQGQASDIGLEVSNVKVWNDRLEGEIARMTGQTAARVREDMRRDFYLSSEEAVRYGLIDKVLLP-------APQKRATAGG------DVDLGTFEGEDEQ 301          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.129.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM45_ECTSI1.890e-15085.71ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A835YH32_9STRA5.750e-10265.08ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A6H5L521_9PHAE3.980e-9069.16ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2KWW7_9STRA1.100e-7351.98ATP-dependent Clp protease proteolytic subunit (Fr... [more]
A0A7S2BG56_9STRA1.300e-7354.46ATP-dependent Clp protease proteolytic subunit n=1... [more]
F0Y3R0_AURAN1.200e-7151.74ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2WMH7_9STRA1.540e-7149.58ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2WJC8_9STRA5.260e-7152.54ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A6U3QDB9_9STRA2.030e-7050.85ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7R9YXR7_9STRA6.160e-6849.79ATP-dependent Clp protease proteolytic subunit n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10contigA-nodosum_M_contig10:1172948..1176024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog44056.XP_009034839.1
PFAMsCLP_protease
Model size1191
Max annot lvl2759|Eukaryota
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
Hectar predicted targeting categorychloroplast
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0008150,GO:0009368,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009840,GO:0009941,GO:0009987,GO:0010287,GO:0016043,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071840
Exons5
Evalue1.35e-73
EggNOG OGsCOG0740@1|root,KOG0840@2759|Eukaryota
EC3.4.21.92
Descriptionserine-type endopeptidase activity
Cds size939
COG categoryOU
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10.129.2prot_A-nodosum_M_contig10.129.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10 1172948..1175772 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866353.3484652-CDS-A-nodosum_M_contig10:1172947..11730731680866353.3484652-CDS-A-nodosum_M_contig10:1172947..1173073Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1172948..1173073 -
1680866353.3652136-CDS-A-nodosum_M_contig10:1173375..11735731680866353.3652136-CDS-A-nodosum_M_contig10:1173375..1173573Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1173376..1173573 -
1680866353.3733208-CDS-A-nodosum_M_contig10:1174240..11745341680866353.3733208-CDS-A-nodosum_M_contig10:1174240..1174534Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1174241..1174534 -
1680866353.3816257-CDS-A-nodosum_M_contig10:1174974..11750911680866353.3816257-CDS-A-nodosum_M_contig10:1174974..1175091Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1174975..1175091 -
1680866353.3990972-CDS-A-nodosum_M_contig10:1175568..11757721680866353.3990972-CDS-A-nodosum_M_contig10:1175568..1175772Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1175569..1175772 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866353.4087553-UTR-A-nodosum_M_contig10:1175772..11760241680866353.4087553-UTR-A-nodosum_M_contig10:1175772..1176024Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 1175773..1176024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10.129.2

>prot_A-nodosum_M_contig10.129.2 ID=prot_A-nodosum_M_contig10.129.2|Name=mRNA_A-nodosum_M_contig10.129.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=313bp
MITRRGWLILMLGVARAPYFSNAFISSHPPLSRPLGRKSREMAGERGVQA
VSMAAKRDVLRMPSSEPMVPYKREGAQVATWMPVSQRLQQSRIIMVGKFI
DDQYANQLIAMLLYHEKEDPTKKISLYFNSPGALIRPALSVYDTLMHMGP
EISTLNLGLATGMVSFLCAAGKRGERYALPNARFLMQRTGMEDPYQGQAS
DIGVEVQNVMKGNSRMEQALQRITGHTIAKIHQDFQRDFYLSSSEAVQYG
IIDEVLLPRGKDRQDLYKERGLVGGPRELNDDPDFGTFGGEGQRFGDIGG
GGWGGGAGVDDDG
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mRNA from alignment at A-nodosum_M_contig10:1172948..1176024-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10.129.2 ID=mRNA_A-nodosum_M_contig10.129.2|Name=mRNA_A-nodosum_M_contig10.129.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3077bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1172948..1176024- (Ascophyllum nodosum dioecious)
CTATATTCATGTTCCATATTTTAGCAGGTTTCCCTGCCTTTGGGCTCTCT CTACTCCTTGATGTTTGCCGGCGAGCTTGCTTCGCCCGGACGACCAAGCC GGCGTACCCAGCCGAATCTCTCTCTGTTTACGTTTTTATAGTGACTCACG AAAGCGGGACGCCATAGTCGTAACGAAAAAAGAAGGGAGACATTTCGTCG TGAGGAAACATCCGTGCTGTGGTGCTCCAACATAGAACACCCTGCAGCAA GCATGATCACTCGGCGGGGGTGGCTGATCTTAATGCTGGGCGTAGCGAGG GCGCCATATTTTTCCAATGCATTCATCTCTTCTCATCCACCGCTTTCACG ACCACTAGGAAGGAAATCGCGGGAAATGGCTGGAGAAAGGGGCGTACAGG CCGTGTCCATGGCAGCCAAACGCGACGTTCTTCGCATGCCCAGCTCGGAG CCTATGGTATGGTATAGTGCTGGTTGACGCCAGTTGGGGGAGGTTCAGCG GGAACTAGAGGACGCGCGGCGGCTGTTAGCCGTTGTTGTGTTACATTAGT CAGTCGCACCGATACTATACCTAACAACAAACTCGACGCAAAGAATATTG ATTGATCATGTTGCGCAGCTTGAGCAAGACAACAACCTCTTCAGATACTC TTGCTTACAGTATTAGTCACGATCCATTGATCAAATAATATGCACGAGCA CTTGTACCTGAGTTTGCATAGCTCAAGGAAGACCCCGCAGCTAAACGTCC ACGAGTATCAACGCCCTCTTATAACAGTCCCGTTTTGTAGCGGGCAAGGA TAACTTTTGAACCTCCATCTAATCGACCGCGCGCTCAACAACGACTCATA TCTGTAGCTCTTTTTTCTTTTTACAACATACACACTTGTAATACAGCACT GCGCTGCTGGCATGCGCCCCACGTGTTCTCAAGGTGCCCTACAAACGAGA GGGCGCTCAGGTGGCAACTTGGATGCCCGTCAGCCAGCGCTTGCAGCAGT CTCGTATTATAATGGTGGGCAAGTTCATCGACGATCAGTACGCCAATCAG GTTCGGGAAAGAGGAACTATGCAGGATCTGGACGAATATGCAAAATGCCG GAAGTCGTCGCTTTTTACTCAGTTCCTTGTCCATGGGTTTACATTTGTTG CGCAGGATCGTGCTCCGTACACAGCAGTCTCTAGTCTGTAAAATCGACAT CAACTGGAAAACACTCAGTACCCTTTTAGATGTCGAAATCGATCCGCCTT CGTGTGGTCCTGTTCGTTACGGAGGATCATCTCGATCTCGTCTCGCCGCG AATTTCCCCGCGTTCGCCTGATTCCCAGTAGTGGCGTTAATATCAATATA TAGATGCCTTTCCTCCGACTGTGGTGAGAAGAAAGCCACGTTTTTGTATA CCGTCAAGCTTAACGATAACCCTGGCTTCTTGCAACAACCCCTCCCATAA CTATATACTGTGTTGCATTTCCATTTGATCGTCGCGGCAGCTGATCGCCA TGCTCCTGTACCACGAGAAGGAAGACCCCACTAAAAAAATATCCCTGTAC TTCAACTCCCCTGGGGCGCTCATCCGCCCGGCGCTCTCCGTGTACGACAC CTTGATGCACATGGGGCCGGAGATCAGCACCCTAAATCTCGGCCTCGCGA CGGGGATGGTGTCCTTCCTTTGCGCGGCGGGAAAGCGCGGAGAGCGTTAC GCCTTGCCCAACGCCCGGTTCTTGATGCAGCGAACGGGAATGGAGGATCC TTACCAGGGCCAGGCGTCCGACATTGGGGTAGAGGTGCGTTCATCACGAT GATGTTGCAACCCTATCATCGATTTGAGAAACGATTGAGTTGACCGTGGA CGGACGGTAAGCGAGCGAATTCGTAGCGGGTCCTGCTACGGGTGTGGAGG CGTTTTTTGCGGTGTCGCGGCAGTGGATGTGATGGATCCGTTAAGCTCCC GAGATATGTTTGTGGCTGTAAGCTTGCTCCTCGATGAAGTGAAGCAACAC CGGGTTGGATCGCAGGTATCTTCGTTAATTTTCGTCCTCTTCAAGCTCCA AACGACTTAAAGACTAGAAAACACAAGAAGTCCACAACGCCAGCCCTTGC CAAACGCTACCTCCGACCAACCAGCGATTACCACGAAATTACCTCCCCCC CGAGGGAATTTGCCTGCCGACACTATTACAGTGGATATCTGAGCAACTTA GGGGCGTTGACGCTGCGGGCAGGACGGAGAATAGGTTAAGAAGATATCGA CGGGCATTCAAGCATGGGTAGCACGCCGTAGGACCTCTCCGCAATTAGTA TGAGAATGCTCTGTTGGTAAGTCTATCAATGCTGCTGTTGTCGTACTCTC GCAACCTTCGACAGCAGCTTGCCTGGTTTCCTTCTATTCTTGCCGCCTTA ACTTGAACTGTACTGTACTGTACCTACTGTACCGCTCTTTGCGGAGGCAA GGTGCAAAATGTTATGAAGGGGAACTCCAGGATGGAGCAAGCTTTGCAGC GGATCACGGGCCACACCATAGCCAAGATCCACCAAGATTTTCAGCGTGAC TTTTACCTGTCGTCGTCAGAGGCCGTGCAGTACGGCATCATCGACGAGGT GCTCTTGCCGAGAGGGAAAGACCGCCAAGACCTCTACAAGGAGCGAGGGG TGAGAGGACTCCGGCTGCCGGAGGTTTCCGCGTGTTCCCCCCGATGCTAC CCTTTGTAAGAACATCAACTTACTCGCGCAGTCAAAAACACGTCTCCAAA ATTTCGCAAGTATTACATTTTGCCCCTTGTACCGACGCTGCTTCTAACGA CTACGCGAGTCGTGGGCCTTGAACGCCTCGCCGGTTGATTGATCGATGAT CGTGGATGCATCAAATCGTATGTGTGTCTCACTCGTTACGTTTATCTGAG GCGCGCTGCCTACCGTTGTCCGTCGCTGTGATCCTCCATGTACTGCTGCA GCTGGTGGGCGGCCCGCGGGAGCTCAACGACGATCCGGACTTCGGCACTT TTGGAGGCGAAGGACAGCGTTTCGGGGACATCGGGGGTGGGGGGTGGGGG GGCGGGGCAGGGGTCGATGACGACGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10:1172948..1176024-

>mRNA_A-nodosum_M_contig10.129.2 ID=mRNA_A-nodosum_M_contig10.129.2|Name=mRNA_A-nodosum_M_contig10.129.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=939bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1172948..1176024- (Ascophyllum nodosum dioecious)
ATGATCACTCGGCGGGGGTGGCTGATCTTAATGCTGGGCGTAGCGAGGGC
GCCATATTTTTCCAATGCATTCATCTCTTCTCATCCACCGCTTTCACGAC
CACTAGGAAGGAAATCGCGGGAAATGGCTGGAGAAAGGGGCGTACAGGCC
GTGTCCATGGCAGCCAAACGCGACGTTCTTCGCATGCCCAGCTCGGAGCC
TATGGTGCCCTACAAACGAGAGGGCGCTCAGGTGGCAACTTGGATGCCCG
TCAGCCAGCGCTTGCAGCAGTCTCGTATTATAATGGTGGGCAAGTTCATC
GACGATCAGTACGCCAATCAGCTGATCGCCATGCTCCTGTACCACGAGAA
GGAAGACCCCACTAAAAAAATATCCCTGTACTTCAACTCCCCTGGGGCGC
TCATCCGCCCGGCGCTCTCCGTGTACGACACCTTGATGCACATGGGGCCG
GAGATCAGCACCCTAAATCTCGGCCTCGCGACGGGGATGGTGTCCTTCCT
TTGCGCGGCGGGAAAGCGCGGAGAGCGTTACGCCTTGCCCAACGCCCGGT
TCTTGATGCAGCGAACGGGAATGGAGGATCCTTACCAGGGCCAGGCGTCC
GACATTGGGGTAGAGGTGCAAAATGTTATGAAGGGGAACTCCAGGATGGA
GCAAGCTTTGCAGCGGATCACGGGCCACACCATAGCCAAGATCCACCAAG
ATTTTCAGCGTGACTTTTACCTGTCGTCGTCAGAGGCCGTGCAGTACGGC
ATCATCGACGAGGTGCTCTTGCCGAGAGGGAAAGACCGCCAAGACCTCTA
CAAGGAGCGAGGGCTGGTGGGCGGCCCGCGGGAGCTCAACGACGATCCGG
ACTTCGGCACTTTTGGAGGCGAAGGACAGCGTTTCGGGGACATCGGGGGT
GGGGGGTGGGGGGGCGGGGCAGGGGTCGATGACGACGGC
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