prot_A-nodosum_M_contig108.43.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig108.43.1
Unique Nameprot_A-nodosum_M_contig108.43.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length466
Homology
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BLAST of mRNA_A-nodosum_M_contig108.43.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.820e-16
Identity = 59/135 (43.70%), Postives = 79/135 (58.52%), Query Frame = 0 
Query:  335 DGGAIASRVLRSGEYSRRSLSTAEESRLIVAGQTMFAENSCGGKGGGLVMLGGLSAAFVALGIIFVGNDAAVAGGGVFISSTGEGPVFTNATFMYNNAQSGGGVYATGSGTSMDTDGELLP---TTFEGCMFIGN 466
            DGG I       G +S  S+S  + S L++ G T F  N+CG  GG L +LGGL+       + F+GN A VAGG VF+S TG GP+FT A F+ N+AQ GG V   GSG ++  + ++ P   TTF+ C FI N
Sbjct:  536 DGGVI-------GSFSTDSVSN-QGSTLVMNGTTAFVNNTCGANGGALALLGGLAVNIGTENVSFIGNAAEVAGGAVFVSGTGFGPIFTGARFISNSAQVGGAVSTVGSG-NLKENADISPPNPTTFDHCHFIDN 661
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig108.43.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G301_ECTSI1.820e-1643.70Polymorphic Outer membrane protein G/I family n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 96..114
e-value: 0.0026
score: 15.5
NoneNo IPR availablePANTHERPTHR32158FAMILY NOT NAMEDcoord: 14..173
coord: 158..306
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 150..330
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 39..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig108contigA-nodosum_M_contig108:581369..582766 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig108.43.1mRNA_A-nodosum_M_contig108.43.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig108 581369..582766 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig108.43.1 ID=prot_A-nodosum_M_contig108.43.1|Name=mRNA_A-nodosum_M_contig108.43.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=466bp
LHVTDRSSASWAGYSAFSGNAAIRDGGALSILHASTASGIGQTTFADNAA
DGSGGAVRVTNRSGMTWAEETNFSHNAALIEGGALYISGESSLSGSGRTT
FSQNTAGAGGGALNVVDGGEVSLEGDTAFAGNFAGTDGGAVRLYFEGIAS
WNGNTDFDSNTASASGGALFLEAHSNASCIGNTTFSRNVALSYGGAQFLL
DESSFFSAGKTSFVEDVAESSGGALYITDGSSTAWEGWTTFSGNTAKSDD
GGAMYVGRGSSAFWESAALFSTNRAGREGGAVFVDDGSDVFWSGETQFFN
NTAVTGSGGAVLVAGASTVQWVAETGFTSNVAGSDGGAIASRVLRSGEYS
RRSLSTAEESRLIVAGQTMFAENSCGGKGGGLVMLGGLSAAFVALGIIFV
GNDAAVAGGGVFISSTGEGPVFTNATFMYNNAQSGGGVYATGSGTSMDTD
GELLPTTFEGCMFIGN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence