mRNA_A-nodosum_M_contig108.43.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig108.43.1
Unique NamemRNA_A-nodosum_M_contig108.43.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig108.43.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.820e-16
Identity = 59/135 (43.70%), Postives = 79/135 (58.52%), Query Frame = 1 
Query: 1003 DGGAIASRVLRSGEYSRRSLSTAEESRLIVAGQTMFAENSCGGKGGGLVMLGGLSAAFVALGIIFVGNDAAVAGGGVFISSTGEGPVFTNATFMYNNAQSGGGVYATGSGTSMDTDGELLP---TTFEGCMFIGN 1398
            DGG I       G +S  S+S  + S L++ G T F  N+CG  GG L +LGGL+       + F+GN A VAGG VF+S TG GP+FT A F+ N+AQ GG V   GSG ++  + ++ P   TTF+ C FI N
Sbjct:  536 DGGVI-------GSFSTDSVSN-QGSTLVMNGTTAFVNNTCGANGGALALLGGLAVNIGTENVSFIGNAAEVAGGAVFVSGTGFGPIFTGARFISNSAQVGGAVSTVGSG-NLKENADISPPNPTTFDHCHFIDN 661
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig108.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G301_ECTSI1.820e-1643.70Polymorphic Outer membrane protein G/I family n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig108contigA-nodosum_M_contig108:581369..582766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G301
PFAMsBeta_helix,Chlam_PMP
Model size1398
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.99e-17
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size1398
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866464.2735934-CDS-A-nodosum_M_contig108:581368..5827661680866464.2735934-CDS-A-nodosum_M_contig108:581368..582766Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig108 581369..582766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig108.43.1prot_A-nodosum_M_contig108.43.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig108 581369..582766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig108.43.1

>prot_A-nodosum_M_contig108.43.1 ID=prot_A-nodosum_M_contig108.43.1|Name=mRNA_A-nodosum_M_contig108.43.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=466bp
LHVTDRSSASWAGYSAFSGNAAIRDGGALSILHASTASGIGQTTFADNAA
DGSGGAVRVTNRSGMTWAEETNFSHNAALIEGGALYISGESSLSGSGRTT
FSQNTAGAGGGALNVVDGGEVSLEGDTAFAGNFAGTDGGAVRLYFEGIAS
WNGNTDFDSNTASASGGALFLEAHSNASCIGNTTFSRNVALSYGGAQFLL
DESSFFSAGKTSFVEDVAESSGGALYITDGSSTAWEGWTTFSGNTAKSDD
GGAMYVGRGSSAFWESAALFSTNRAGREGGAVFVDDGSDVFWSGETQFFN
NTAVTGSGGAVLVAGASTVQWVAETGFTSNVAGSDGGAIASRVLRSGEYS
RRSLSTAEESRLIVAGQTMFAENSCGGKGGGLVMLGGLSAAFVALGIIFV
GNDAAVAGGGVFISSTGEGPVFTNATFMYNNAQSGGGVYATGSGTSMDTD
GELLPTTFEGCMFIGN
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mRNA from alignment at A-nodosum_M_contig108:581369..582766+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig108.43.1 ID=mRNA_A-nodosum_M_contig108.43.1|Name=mRNA_A-nodosum_M_contig108.43.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1398bp|location=Sequence derived from alignment at A-nodosum_M_contig108:581369..582766+ (Ascophyllum nodosum dioecious)
CTGCACGTGACTGACCGCAGCAGCGCATCGTGGGCTGGATACTCCGCGTT
CTCGGGCAACGCCGCCATCCGGGACGGGGGTGCCCTTTCAATTCTCCATG
CCAGTACCGCCTCCGGGATAGGGCAGACCACATTCGCCGACAACGCCGCA
GACGGTTCGGGAGGTGCAGTACGTGTGACGAATCGAAGCGGAATGACATG
GGCAGAAGAGACAAACTTCTCTCACAACGCCGCCCTCATCGAAGGTGGCG
CCCTCTACATTTCTGGCGAAAGCAGTCTCTCTGGATCTGGAAGAACGACC
TTCTCGCAAAACACTGCCGGCGCTGGAGGCGGGGCGCTGAATGTGGTCGA
CGGGGGCGAAGTATCGTTGGAGGGAGACACGGCCTTTGCCGGCAATTTTG
CCGGAACCGACGGTGGTGCCGTCCGTCTATACTTTGAAGGAATTGCGTCA
TGGAATGGCAACACGGACTTTGACTCCAACACCGCTAGCGCCTCGGGTGG
GGCGCTGTTCTTGGAAGCCCACAGCAATGCCTCTTGCATTGGGAACACCA
CATTCTCGAGGAACGTTGCCCTTAGCTACGGGGGTGCCCAGTTTTTGTTG
GACGAGAGTAGCTTTTTCAGCGCAGGTAAAACTTCCTTTGTGGAGGACGT
GGCCGAAAGCTCAGGAGGTGCGCTATACATCACAGATGGGAGCAGTACAG
CCTGGGAAGGATGGACAACCTTTTCAGGCAACACTGCCAAAAGCGACGAT
GGTGGAGCCATGTATGTGGGCCGTGGCAGCAGTGCCTTCTGGGAGTCCGC
CGCACTCTTCTCCACTAATCGTGCTGGCCGAGAGGGGGGTGCAGTGTTCG
TTGATGACGGTTCCGATGTCTTTTGGAGTGGAGAGACTCAGTTTTTTAAC
AACACCGCTGTTACCGGAAGCGGCGGGGCTGTCCTTGTCGCGGGCGCCTC
AACAGTTCAGTGGGTTGCCGAGACGGGTTTCACGTCCAACGTCGCTGGTT
CAGACGGCGGGGCTATCGCGTCGAGGGTGCTCAGGTCAGGCGAATATTCA
CGCCGTAGTCTCTCCACCGCCGAAGAGTCTCGACTGATCGTGGCCGGCCA
AACCATGTTTGCCGAAAATTCTTGCGGGGGCAAAGGTGGGGGATTGGTGA
TGTTGGGCGGGCTTTCTGCCGCGTTCGTCGCTCTCGGAATCATATTTGTC
GGGAATGATGCGGCGGTCGCTGGAGGCGGGGTCTTTATCTCCTCGACTGG
GGAAGGCCCCGTGTTCACAAATGCGACTTTTATGTACAACAATGCACAGT
CAGGCGGTGGGGTGTACGCCACCGGGAGCGGGACGTCGATGGACACTGAC
GGAGAACTGTTACCAACCACATTCGAGGGGTGCATGTTCATAGGAAAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig108:581369..582766+

>mRNA_A-nodosum_M_contig108.43.1 ID=mRNA_A-nodosum_M_contig108.43.1|Name=mRNA_A-nodosum_M_contig108.43.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1398bp|location=Sequence derived from alignment at A-nodosum_M_contig108:581369..582766+ (Ascophyllum nodosum dioecious)
CTGCACGTGACTGACCGCAGCAGCGCATCGTGGGCTGGATACTCCGCGTT
CTCGGGCAACGCCGCCATCCGGGACGGGGGTGCCCTTTCAATTCTCCATG
CCAGTACCGCCTCCGGGATAGGGCAGACCACATTCGCCGACAACGCCGCA
GACGGTTCGGGAGGTGCAGTACGTGTGACGAATCGAAGCGGAATGACATG
GGCAGAAGAGACAAACTTCTCTCACAACGCCGCCCTCATCGAAGGTGGCG
CCCTCTACATTTCTGGCGAAAGCAGTCTCTCTGGATCTGGAAGAACGACC
TTCTCGCAAAACACTGCCGGCGCTGGAGGCGGGGCGCTGAATGTGGTCGA
CGGGGGCGAAGTATCGTTGGAGGGAGACACGGCCTTTGCCGGCAATTTTG
CCGGAACCGACGGTGGTGCCGTCCGTCTATACTTTGAAGGAATTGCGTCA
TGGAATGGCAACACGGACTTTGACTCCAACACCGCTAGCGCCTCGGGTGG
GGCGCTGTTCTTGGAAGCCCACAGCAATGCCTCTTGCATTGGGAACACCA
CATTCTCGAGGAACGTTGCCCTTAGCTACGGGGGTGCCCAGTTTTTGTTG
GACGAGAGTAGCTTTTTCAGCGCAGGTAAAACTTCCTTTGTGGAGGACGT
GGCCGAAAGCTCAGGAGGTGCGCTATACATCACAGATGGGAGCAGTACAG
CCTGGGAAGGATGGACAACCTTTTCAGGCAACACTGCCAAAAGCGACGAT
GGTGGAGCCATGTATGTGGGCCGTGGCAGCAGTGCCTTCTGGGAGTCCGC
CGCACTCTTCTCCACTAATCGTGCTGGCCGAGAGGGGGGTGCAGTGTTCG
TTGATGACGGTTCCGATGTCTTTTGGAGTGGAGAGACTCAGTTTTTTAAC
AACACCGCTGTTACCGGAAGCGGCGGGGCTGTCCTTGTCGCGGGCGCCTC
AACAGTTCAGTGGGTTGCCGAGACGGGTTTCACGTCCAACGTCGCTGGTT
CAGACGGCGGGGCTATCGCGTCGAGGGTGCTCAGGTCAGGCGAATATTCA
CGCCGTAGTCTCTCCACCGCCGAAGAGTCTCGACTGATCGTGGCCGGCCA
AACCATGTTTGCCGAAAATTCTTGCGGGGGCAAAGGTGGGGGATTGGTGA
TGTTGGGCGGGCTTTCTGCCGCGTTCGTCGCTCTCGGAATCATATTTGTC
GGGAATGATGCGGCGGTCGCTGGAGGCGGGGTCTTTATCTCCTCGACTGG
GGAAGGCCCCGTGTTCACAAATGCGACTTTTATGTACAACAATGCACAGT
CAGGCGGTGGGGTGTACGCCACCGGGAGCGGGACGTCGATGGACACTGAC
GGAGAACTGTTACCAACCACATTCGAGGGGTGCATGTTCATAGGAAAC
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