prot_A-nodosum_M_contig10.90.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig10.90.1
Unique Nameprot_A-nodosum_M_contig10.90.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length337
Homology
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Match: D7FM11_ECTSI (mRNA export factor GLE1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM11_ECTSI)

HSP 1 Score: 382 bits (980), Expect = 2.610e-122
Identity = 186/300 (62.00%), Postives = 231/300 (77.00%), Query Frame = 0
Query:   37 RRALNDSLMASADPAIKRMRMAFKKAYQGSLNKLACSPSSVSLVMREIHEKANAPLTEARIGGYIDRAQEFFLYNVADKLVVYAERDHFSAESYRMAFPLACVAVDLMTEHRHLAELFLGRLFAGCPSAVPALAFNTAGMSDTKVMSLLGKLEGEDMTAYLNRTKGLIVLMAATMQTPSRRLGELPHPLPLAEGWRWITRFLNGLTAYVRRGNSPPVPTGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTDVLPILLPRSMVPHLLDVIIQDYESTGCRFLPPAFRETEFRDFRAWGET 336
            RRA  D ++AS+DP +K++RMAFKK+YQG LNKL+ +PS+V  V R+I  KA APL +AR  G+  +A+EF  +N+ADKLV Y+ERDHFS +SYRMAFPLACVAVDLM EH  L+ELFLG L+  CPSAVPAL+F+TAG+SD +VM+LLG+   ED+  +LNRTKGL+VLMAA MQ                 GW W+ RF+NG+  YV++GN PPVP GPVLEWFLKV GFELQR YG+AF KVV  IKT++LPILLP+S+VPHLLDV+++DYE  G RFLPPA R+ EFR FR WG+T
Sbjct:  618 RRAAVDQILASSDPGVKKIRMAFKKSYQGCLNKLSATPSTVRQVARDIQVKAEAPLADARRAGWEAKAKEFLFFNLADKLVDYSERDHFSGDSYRMAFPLACVAVDLMEEHAGLSELFLGTLYLRCPSAVPALSFDTAGLSDREVMALLGQTRDEDLPTFLNRTKGLVVLMAAVMQ-----------------GWCWLARFVNGMAGYVKKGNPPPVPAGPVLEWFLKVVGFELQRHYGRAFDKVVQAIKTEILPILLPKSVVPHLLDVVMEDYEGRGRRFLPPAGRDKEFRHFRVWGDT 900          
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Match: UPI000C6D6ACB (nucleoporin GLE1-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6D6ACB)

HSP 1 Score: 87.0 bits (214), Expect = 5.810e-16
Identity = 70/231 (30.30%), Postives = 107/231 (46.32%), Query Frame = 0
Query:  106 EFFLYNVADKLVVYAERDHFSAESYRMAFPLACVAVDLMTEHRHLAELFLGRLFAGCPSAVPALAFNTAGMSDTKVMSLLGKL--EG--EDMTAYLNRTKGLIVLMAATMQTPSRRLGELPHPLPLAEGWRWITRFLNGLTAYVRRGNSPPVPTGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTDVLPIL----LPRSMVP-HLLDVIIQDYESTGCRFLPPAFRETEF 327
            ++F  ++  K +V       S+     AFPLA + V L  ++  L +LFL  L+  CP  VP       G S+      LG +  EG  E    +L R  G++ L AA +QTP   +   PHP  +   W W+ R LN       R +     T  +L  FL+VAG+ +Q+ YGK FQK++  +  + LP +    LP S  P   L+  +++Y   G    P    ++ F
Sbjct:   61 KYFCLDLLAKKIVGQGESQISSRP-EAAFPLAALTVFLCQKYPDLLKLFLAHLYKKCPYLVPYYIPRKEGQSEDDYYRQLGYVYSEGVIEKQVMFLKRMSGIVRLYAAVIQTPP--ILNSPHPHGMKHAWIWLARLLN----LEPRSDI----TATILVDFLEVAGYVMQKTYGKQFQKLIEALAIEFLPKIKQATLPGSGGPLQRLESFLEEYFKKGTVPQPSGILDSTF 280          
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Match: A0A1V9YX05_9STRA (mRNA export factor GLE1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YX05_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 5.920e-16
Identity = 72/263 (27.38%), Postives = 114/263 (43.35%), Query Frame = 0
Query:   39 ALNDSLMASADPAIKRMRMAFKKAYQGSLNKLACSPSSVSLVMREIHEKANAPLTEARIGG--YIDRAQEFFLYNVADKLVVYAERDHFSAESYRMAFPLACVAVDLMTEHRHLAELFLGRLFAGCPSAVPALAFNTAGMSDTKVMSLLG--------KLEGEDMTAYLNRTKGLIVLMAATMQTPSRRLGELPHPLPLAEGWRWITRFLNGLTAYVRRGNSPPVPTGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTDVLP 291
            A N  ++ S+DP IK++RM  KK    + N++A +P+S+ LV++    K  + LT+AR  G  Y++ + +     +  ++ V  E         R  FPLA V          L ++FL  +   CP  +P         S  +    +G        K + E    Y  R    + L AA MQT        P  L + + W W+    NG          P   T  +L   L+ AGF +  RY + F+K++ +I+ DVLP
Sbjct:  255 AANQPILDSSDPNIKKIRMNVKKQIGEACNQVANTPNSIQLVVK----KLCSVLTDARNAGLEYLNFSLDILAARITSQVKVITE--------IRSCFPLAHVLTMCCIHSPELVDIFLAHINKMCPYTIPHEPVKLPSESIEEYTKKIGMEWDDDDGKKKLETTEKYTMRMNIAVALQAAAMQTTPYDGSPQPKGLTIDDCWAWLANIANG---------KPHAFTASILTSLLETAGFAMILRYRRQFEKLLQLIRKDVLP 496          
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Match: UPI00188817BE (LOW QUALITY PROTEIN: nucleoporin GLE1-like n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=UPI00188817BE)

HSP 1 Score: 85.9 bits (211), Expect = 9.520e-15
Identity = 63/204 (30.88%), Postives = 97/204 (47.55%), Query Frame = 0
Query:  104 AQEFFLYNVADKLVVYAERDHFSAESYRMAFPLACVAVDLMTEHRHLAELFLGRLFAGCPSAVPALAFNTAGMSDTKVMSLLG-KLEGEDM---TAYLNRTKGLIVLMAATMQTPSRRLGELP------------HPLPLAEGWRWITRFLNGLTAYVRRGNSPPVPTGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTDVLP 291
            A  + L  +A+K+V+  E    S E    A+P+A VAV L   +  L +L LG  +  CP+ VP     +   S+++ + L G K +G +M   + +L R  GL+ L AA +QTP      LP             P     GW+W+   LN  T         P     ++  FL+VAG+ LQR YG+ F+K++ ++  D  P
Sbjct:  452 ALRYCLDKLAEKIVLQGEEQILSNEE--TAYPVAAVAVGLWCRYPDLGDLLLGHFYMRCPALVPVFFSRSMASSESEYLRLCGYKCDGSNMETESQFLRRVTGLMRLYAALLQTP------LPPWHKPLDSDMSRQPPGSKRGWQWLAMCLNTPT-------EDPNFAATLICTFLEVAGWTLQRDYGRQFRKMLHVLCKDYFP 640          
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Match: UPI001C71F40C (nucleoporin GLE1 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C71F40C)

HSP 1 Score: 84.3 bits (207), Expect = 2.870e-14
Identity = 72/250 (28.80%), Postives = 109/250 (43.60%), Query Frame = 0
Query:   49 DPAIKRMRMAFKKAYQGSLNKLACSPSS-----VSLVMREIHEKANAPLTEARIGGYIDRAQEFFLYNVADKLVVYAERDHFSAESYRMAFPLACVAVDLMTEHRHLAELFLGRLFAGCPSAVPALAFNTAGMSDTKVMSLLG-KLEGEDMTA----YLNRTKGLIVLMAATMQTPSRRLGELPHPLPLAEGWRWITRFLNGLTAYVRRGNSPPVPTGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTD 288
            DP  K+ R   +KA    +N L+ +  S     V+ ++  +  KA+   T  R          F  Y  A + V   + D   +  +  AFP+A  A+ +  +     +L LG  +  CP   P         SD +    LG +L+ ED       +L+R  G + L AA +Q+P       PHP  +  GW+W++R LN            P  T  VL  FL VAG+ LQ+ YGK F K++ I+  D
Sbjct:  316 DPKNKKYRFELQKAVNTPINSLSSNSGSQIKTKVNKLLSILTGKASE--TSGRNMNGDSPIFNFCAYLAAKQFV--EQGDTQISSQHSTAFPIAFAALGVWVKQPEFGQLLLGHFYDKCPYLAPYYPPKEESQSDEEYFQSLGYRLDEEDKIEPKYKFLHRISGYVRLYAAIIQSPLPPGVSSPHPHGIEWGWKWLSRMLNL--------EPRPDITPTVLFDFLDVAGYALQKAYGKQFNKMLHILCKD 553          
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Match: A0A7M5UWB7_9CNID (mRNA export factor GLE1 n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5UWB7_9CNID)

HSP 1 Score: 83.6 bits (205), Expect = 5.810e-14
Identity = 61/189 (32.28%), Postives = 93/189 (49.21%), Query Frame = 0
Query:  113 ADKLVVYAERDHFSAESYRMAFPLACVAVDLMTEHRHLAELFLGRLFAGCPSAVPALAFNTAGMSDTKVMSLLG------KLEGEDMTAYLNRTKGLIVLMAAT--MQTPSRRLGELPHPLPLAEGWRWITRFLNGLTAYVRRGNSPPVP--TGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTDVLP 291
            A KLV+  +     A S++ AFP+A V   + T    + +L LG  +  CP  VP     T  +S T+   +LG      K+E +D   YLN+  G + L A+   M+ P    G   HP  L  GW W TR LN            PV   T  ++  FL+VAG  + +R+GK F+K++ ++K +++P
Sbjct:  519 AKKLVMQGQSQ--VASSFKTAFPIAAVCAGIWTLFPDVGDLLLGYFYLKCPYLVPLHFPKTDKISSTEYYQMLGYNVDDGKVEEDDK--YLNKLSGYVRLYASIIQMEMPPDLAGR-GHPHGLENGWVWFTRVLN----------LEPVELVTATIIFDFLEVAGHAMLKRFGKQFEKLLSLVKDELMP 692          
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Match: M2XM13_GALSU (mRNA export factor GLE1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XM13_GALSU)

HSP 1 Score: 77.0 bits (188), Expect = 7.830e-12
Identity = 65/244 (26.64%), Postives = 107/244 (43.85%), Query Frame = 0
Query:   49 DPAIKRMRMAFKKAYQGSLNKLACSPSSVSLVMREIHEKANAPLTEARIGGYIDR-AQEFFLYNVADKLVVYAERDHFSAESYRMAFPLACVAVDLMTEHRHLAELFLGRLFAGCPSAVPALAFNTAGMSDTKVMSLLGKLEGEDMTAYLNRTKGLIVLMAATMQTPSRRLGELPHPLPLAEGWRWITRFLNGLTAYVRRGNSPPVPTGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTDVLP 291
            D +    R+  KK    + N++A S        ++I  KA   +   R  G   + +Q +    V ++LV   E+    A     AF +A V + +  E   L +LFL +    C   +PA A  +   S  K    +G  +GE +  +  R  G + L AA +QT    L    +   +  GW W+ R +N           P   T  VL  FL++AG+ L + YG+ F+K++ +I+  +LP
Sbjct:  349 DASTASYRLHLKKRINLAANQIAAS-------QKQILNKAYDIVDTLRKAGQSSKESQAYCFLCVIERLVEEGEKQ--VALHGDSAFAIAAVIIAVTAEFSELKQLFLAQFHNVCIFTIPAYAMRSKHDSVEKYWQSMGWKDGETLERFYERMSGYLALHAAVIQTEIPSLAN--NLFGIDSGWTWLARVVN---------MKPRRFTAFVLISFLEIAGYALNKHYGRQFEKLLRLIQGHILP 572          
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Match: A0A7S2M581_9STRA (mRNA export factor GLE1 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M581_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.360e-10
Identity = 70/253 (27.67%), Postives = 115/253 (45.45%), Query Frame = 0
Query:   52 IKRMRMAFKKAYQGSLNKLACSPSSVSLVMREIHEKANAPLTE----ARIG--GYIDRAQEFFLYNVADKLVVYAERDHFSAESYRMAFPLACVAVDLMTEHRHLAELFLGRLFAGCPSAVPALAFNTAGMSDTKVMSLLGKL-----EGEDMTAYLNRTKGLIVLMAATMQ-TPSRRLGELPHPLPLAEGWRWITRFLNGLTAYVRRGNSPPVP--TGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTDVL 290
            + + R+ FKK   G +N L+   + +  V R + E   A   +    A  G  G +   +++ L  +A  L+V  +   F+       FPLA +   + T+   +  L    L++ CP+A+P+L+  +    +  +M  LG +     E E    +LNRT+GLI +MA  M  TPS       H   +     W+ RFL+ L        + P+P  T PVL  FL  AG  L  ++    +    +I+TD+L
Sbjct:  410 VGKRRLQFKKVVNGRINTLSHEVNKILDVGRVVVEAIEAASRDDDAAASSGAEGVMTMGKKYLLDLLASNLIVRVQAGTFNGVRGD-GFPLAGMIAYVSTQCDEIGPLLEAHLYSHCPTAIPSLSLTSPDGGEDDLMESLGMIRDKNGEFESFDKFLNRTEGLISIMADIMSSTPSDHTLLGGHEGAMT----WLERFLDLLPG----APTAPLPLLTAPVLVAFLTGAGHMLANKFPAKMKPAFDMIQTDIL 653          
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Match: A0A8J5VL22_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5VL22_ZIZPA)

HSP 1 Score: 65.9 bits (159), Expect = 3.910e-8
Identity = 42/108 (38.89%), Postives = 56/108 (51.85%), Query Frame = 0
Query:  186 GKLEGEDMTAYLNRTKGLIVLMAATMQTPSRRLGELPHPLPLAEGWRWITRFLNGLTAYVRRGNSPPVPTGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTDVLPIL 293
            G+LE  +  +YL      I L AA +QT    +  + HP  LAEGW+W+ +FLN L A           T   L  FLKVAGF L ++YG  F K++ +I    LP L
Sbjct:  606 GQLESTE--SYLTYVAAYIKLYAAMIQT---EIKGVRHPHGLAEGWKWLAKFLNALPA--------TTATACALHAFLKVAGFALHKKYGSQFMKLLDVISRCFLPAL 700          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.90.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FM11_ECTSI2.610e-12262.00mRNA export factor GLE1 n=2 Tax=Ectocarpus TaxID=2... [more]
UPI000C6D6ACB5.810e-1630.30nucleoporin GLE1-like n=1 Tax=Centruroides sculptu... [more]
A0A1V9YX05_9STRA5.920e-1627.38mRNA export factor GLE1 n=1 Tax=Thraustotheca clav... [more]
UPI00188817BE9.520e-1530.88LOW QUALITY PROTEIN: nucleoporin GLE1-like n=1 Tax... [more]
UPI001C71F40C2.870e-1428.80nucleoporin GLE1 n=1 Tax=Parasteatoda tepidariorum... [more]
A0A7M5UWB7_9CNID5.810e-1432.28mRNA export factor GLE1 n=1 Tax=Clytia hemisphaeri... [more]
M2XM13_GALSU7.830e-1226.64mRNA export factor GLE1 n=1 Tax=Galdieria sulphura... [more]
A0A7S2M581_9STRA1.360e-1027.67mRNA export factor GLE1 n=1 Tax=Skeletonema marino... [more]
A0A8J5VL22_ZIZPA3.910e-838.89Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012476mRNA export factor GLE1-likePFAMPF07817GLE1coord: 45..285
e-value: 7.0E-30
score: 104.1
IPR012476mRNA export factor GLE1-likePANTHERPTHR12960GLE-1-RELATEDcoord: 16..297
IPR038506GLE1-like superfamilyGENE3D1.25.40.510coord: 23..316
e-value: 1.6E-40
score: 140.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10contigA-nodosum_M_contig10:868409..872688 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10.90.1mRNA_A-nodosum_M_contig10.90.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig10 864294..872839 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig10.90.1 ID=prot_A-nodosum_M_contig10.90.1|Name=mRNA_A-nodosum_M_contig10.90.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=337bp
MLVGHPSEAVEQKTVQRASAPTFLQRAEELKEAVEARRALNDSLMASADP
AIKRMRMAFKKAYQGSLNKLACSPSSVSLVMREIHEKANAPLTEARIGGY
IDRAQEFFLYNVADKLVVYAERDHFSAESYRMAFPLACVAVDLMTEHRHL
AELFLGRLFAGCPSAVPALAFNTAGMSDTKVMSLLGKLEGEDMTAYLNRT
KGLIVLMAATMQTPSRRLGELPHPLPLAEGWRWITRFLNGLTAYVRRGNS
PPVPTGPVLEWFLKVAGFELQRRYGKAFQKVVLIIKTDVLPILLPRSMVP
HLLDVIIQDYESTGCRFLPPAFRETEFRDFRAWGET*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012476GLE1
IPR038506GLE1-like_sf