mRNA_A-nodosum_M_contig10701.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10701.3.1
Unique NamemRNA_A-nodosum_M_contig10701.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10701.3.1 vs. uniprot
Match: A0A6H5K5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5J8_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 5.730e-40
Identity = 70/95 (73.68%), Postives = 85/95 (89.47%), Query Frame = 1
Query:    1 QPPLCLSVELSVAQVAKKMAEVRTDAVILLGPQGDMRGILTDHDVARKVLGQSLDPARTPVASIMSPDPTWVKATDDALDALATMIERRFRHLPV 285
            +PPLCLSV+L+VAQVAK+MAE+RTDA ILLG  GDM+GILTDHDVARKV+G+SLDP+RTPV+S+M+PDP WV  TD+A+DAL TM+E   RHLPV
Sbjct:  376 KPPLCLSVDLTVAQVAKRMAEIRTDAAILLGQMGDMKGILTDHDVARKVVGRSLDPSRTPVSSVMTPDPIWVTTTDNAMDALETMLETHSRHLPV 470          
BLAST of mRNA_A-nodosum_M_contig10701.3.1 vs. uniprot
Match: D7G6N9_ECTSI (Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N9_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 1.090e-39
Identity = 68/95 (71.58%), Postives = 85/95 (89.47%), Query Frame = 1
Query:    1 QPPLCLSVELSVAQVAKKMAEVRTDAVILLGPQGDMRGILTDHDVARKVLGQSLDPARTPVASIMSPDPTWVKATDDALDALATMIERRFRHLPV 285
            +PPLCLSV+L+VAQVAK+MAE+RTDA ILLG  GDM+G+LTDHD+ARKV+G+SLDP+RTPV+S+M+PDP WV  TD+A+DAL TM+E   RHLPV
Sbjct: 2262 KPPLCLSVDLTVAQVAKRMAEIRTDAAILLGQMGDMKGVLTDHDIARKVVGRSLDPSRTPVSSVMTPDPIWVTTTDNAMDALETMLETHSRHLPV 2356          
BLAST of mRNA_A-nodosum_M_contig10701.3.1 vs. uniprot
Match: D7FJ79_ECTSI (CBS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ79_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 5.190e-21
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = 1
Query:   55 MAEVRTDAVILLGPQGDMRGILTDHDVARKVLGQSLDPARTPVASIMSPDPTWVKATDDALDALATMIERRFRHLPVSQG 294
            MA+VRTDA ILL  +G + GI++D DVAR+V+   LDP+ T V+ +M+P PT V   D A++ L  MIE+RFRHLPV  G
Sbjct:    1 MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDG 80          
BLAST of mRNA_A-nodosum_M_contig10701.3.1 vs. uniprot
Match: A0A7R9VL18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VL18_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 7.910e-21
Identity = 44/93 (47.31%), Postives = 64/93 (68.82%), Query Frame = 1
Query:    7 PLCLSVELSVAQVAKKMAEVRTDAVILLGPQGDMRGILTDHDVARKVLGQSLDPARTPVASIMSPDPTWVKATDDALDALATMIERRFRHLPV 285
            P+  S + SV  V + +A  R DA +L+GP G + GI+TD D+ R+V+ + +DP+ T V+++M+  PT V  TD A+DALATM+E  FRHLPV
Sbjct:   39 PMISSADDSVLSVTQMLANKRGDAALLVGPDGGLAGIVTDTDITRRVVAKHVDPSSTSVSAVMTASPTCVSMTDSAMDALATMVENHFRHLPV 131          
BLAST of mRNA_A-nodosum_M_contig10701.3.1 vs. uniprot
Match: A0A7R9VME7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VME7_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.060e-20
Identity = 44/93 (47.31%), Postives = 64/93 (68.82%), Query Frame = 1
Query:    7 PLCLSVELSVAQVAKKMAEVRTDAVILLGPQGDMRGILTDHDVARKVLGQSLDPARTPVASIMSPDPTWVKATDDALDALATMIERRFRHLPV 285
            P+  S + SV  V + +A  R DA +L+GP G + GI+TD D+ R+V+ + +DP+ T V+++M+  PT V  TD A+DALATM+E  FRHLPV
Sbjct:  374 PMISSADDSVLSVTQMLANKRGDAALLVGPDGGLAGIVTDTDITRRVVAKHVDPSSTSVSAVMTASPTCVSMTDSAMDALATMVENHFRHLPV 466          
BLAST of mRNA_A-nodosum_M_contig10701.3.1 vs. uniprot
Match: B8C5T2_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5T2_THAPS)

HSP 1 Score: 87.4 bits (215), Expect = 1.370e-18
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 1
Query:    7 PLCLSVELSVAQVAKKMAEVRTDAVILLGPQGDMRGILTDHDVARKVLGQSLDPARTPVASIMSPDPTWVKATDDALDALATMIERRFRHLPVS 288
            P+  S   SV  V + +A  R DA I+    G M GI+TD DV R+V+ + L P+ TP++ +M+ +PT V  TD A +AL TM+E RFRHLPV+
Sbjct:   11 PIVSSSTDSVLSVTQMLASKRGDAAIITDQSGGMAGIITDTDVTRRVVAKHLSPSATPISDVMTANPTCVSMTDSATEALVTMVENRFRHLPVT 104          
BLAST of mRNA_A-nodosum_M_contig10701.3.1 vs. uniprot
Match: K3WV91_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV91_GLOUD)

HSP 1 Score: 87.8 bits (216), Expect = 4.260e-18
Identity = 38/86 (44.19%), Postives = 63/86 (73.26%), Query Frame = 1
Query:   28 LSVAQVAKKMAEVRTDAVILLGPQGDMRGILTDHDVARKVLGQSLDPARTPVASIMSPDPTWVKATDDALDALATMIERRFRHLPV 285
            ++VA+ AK+M   R +AV++   +G++RGILTD D+ R+VL + +DP    VAS+M+ +P+ V++ D A++A+  M+E RF+HLPV
Sbjct: 1467 ITVAEAAKRMRHARVEAVVITTEEGELRGILTDTDITRRVLSKDIDPETCSVASVMTANPSCVRSDDPAIEAITKMLEGRFKHLPV 1552          
BLAST of mRNA_A-nodosum_M_contig10701.3.1 vs. uniprot
Match: A0A5D6Y4M3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4M3_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 7.990e-18
Identity = 38/86 (44.19%), Postives = 62/86 (72.09%), Query Frame = 1
Query:   28 LSVAQVAKKMAEVRTDAVILLGPQGDMRGILTDHDVARKVLGQSLDPARTPVASIMSPDPTWVKATDDALDALATMIERRFRHLPV 285
            ++VA+ AK+M   R +AV++    G++RGILTD D+ R+VL + +DP    VA++M+ +P+ V+A D A++A+  M+E RF+HLPV
Sbjct: 2449 ITVAEAAKRMRHARVEAVVITTEDGELRGILTDTDITRRVLAKEIDPETCSVAAVMTANPSCVRADDPAIEAITKMLEGRFKHLPV 2534          
BLAST of mRNA_A-nodosum_M_contig10701.3.1 vs. uniprot
Match: H3GUG5_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=H3GUG5_PHYRM)

HSP 1 Score: 87.0 bits (214), Expect = 8.000e-18
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = 1
Query:   28 LSVAQVAKKMAEVRTDAVILLGPQGDMRGILTDHDVARKVLGQSLDPARTPVASIMSPDPTWVKATDDALDALATMIERRFRHLPV 285
            ++VA+ AK+M + R +AV++   +G++RGILTD D+ R+VL + +DP    VAS+M+  PT V   D A++A+  M+E RF+HLPV
Sbjct: 2731 ITVAEAAKRMRQARVEAVVVTTEEGELRGILTDTDITRRVLAEDIDPESCSVASVMTTKPTCVFMEDQAIEAITKMLEGRFKHLPV 2816          
BLAST of mRNA_A-nodosum_M_contig10701.3.1 vs. uniprot
Match: M4BF33_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BF33_HYAAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.060e-17
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = 1
Query:   28 LSVAQVAKKMAEVRTDAVILLGPQGDMRGILTDHDVARKVLGQSLDPARTPVASIMSPDPTWVKATDDALDALATMIERRFRHLPV 285
            ++VA+ AK+M + R +AV++   +G++RGILTD D+ R+VL + LDP    VAS+M+  P+ V   D A++A+  M+E RF+HLPV
Sbjct:  509 ITVAEAAKRMRQARVEAVVVTTEEGELRGILTDTDITRRVLAEDLDPESCSVASVMTTKPSCVYMEDQAIEAITKMLEGRFKHLPV 594          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10701.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5J8_9PHAE5.730e-4073.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6N9_ECTSI1.090e-3971.58Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FJ79_ECTSI5.190e-2153.75CBS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7R9VL18_9STRA7.910e-2147.31Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7R9VME7_9STRA2.060e-2047.31Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
B8C5T2_THAPS1.370e-1845.74Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K3WV91_GLOUD4.260e-1844.19Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6Y4M3_9STRA7.990e-1844.19Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
H3GUG5_PHYRM8.000e-1845.35Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
M4BF33_HYAAE1.060e-1745.35Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10701contigA-nodosum_M_contig10701:11573..12214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G6N9
PFAMsCBS,IQ,MyTH4,Myosin_head,PB1
Model size300
Max annot lvl2759|Eukaryota
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.78e-40
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Descriptionmotor activity
Cds size300
COG categoryZ
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866457.8637047-CDS-A-nodosum_M_contig10701:11572..117121680866457.8637047-CDS-A-nodosum_M_contig10701:11572..11712Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10701 11573..11712 +
1680866457.875393-CDS-A-nodosum_M_contig10701:12054..122141680866457.875393-CDS-A-nodosum_M_contig10701:12054..12214Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10701 12055..12214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10701.3.1prot_A-nodosum_M_contig10701.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10701 11573..12214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10701.3.1

>prot_A-nodosum_M_contig10701.3.1 ID=prot_A-nodosum_M_contig10701.3.1|Name=mRNA_A-nodosum_M_contig10701.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=100bp
QPPLCLSVELSVAQVAKKMAEVRTDAVILLGPQGDMRGILTDHDVARKVL
GQSLDPARTPVASIMSPDPTWVKATDDALDALATMIERRFRHLPVSQGR*
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mRNA from alignment at A-nodosum_M_contig10701:11573..12214+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10701.3.1 ID=mRNA_A-nodosum_M_contig10701.3.1|Name=mRNA_A-nodosum_M_contig10701.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=642bp|location=Sequence derived from alignment at A-nodosum_M_contig10701:11573..12214+ (Ascophyllum nodosum dioecious)
CAGCCTCCGCTGTGCCTGTCGGTAGAGCTATCGGTGGCCCAGGTGGCGAA GAAGATGGCGGAAGTGAGGACGGATGCGGTGATTCTACTGGGACCTCAGG GGGATATGAGAGGAATCTTGACTGATCACGACGTGGCACGGTACGCCTTC GCAATAATCGACAATAACAATAGATAATACAGTATAATAACCGATGGTCT GCTCGAGCAGTCTTTGGTCTCTTAATCATAATCGTGCAATGCAGTGTGGT CTAGGCTGTTATTAACAGCATTCAAACCGTCGTACCAGAGAGTATTTTGA CAGACTTCATTATTTTGTTTACCAACAACGTGGACGTACGTTTTTATTAG TGTTTCAACCATATTTAGAAGGGTCGAGAGCGTGCTTCTCCGCTTCTTGC TAGAGCACGTGCACGCAACTTGCGCTCCCTTGTGGTGGCAAACATTTTTA CCAAGTACCATCCATGTATGCTTGAATCACAGGAAAGTTTTGGGGCAGTC GCTTGATCCAGCTCGAACCCCGGTAGCGTCAATCATGAGCCCTGACCCCA CTTGGGTGAAGGCTACCGATGATGCGTTGGATGCTCTGGCGACCATGATC GAGAGGCGTTTCAGGCACTTGCCGGTGAGTCAGGGTCGGTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10701:11573..12214+

>mRNA_A-nodosum_M_contig10701.3.1 ID=mRNA_A-nodosum_M_contig10701.3.1|Name=mRNA_A-nodosum_M_contig10701.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at A-nodosum_M_contig10701:11573..12214+ (Ascophyllum nodosum dioecious)
CAGCCTCCGCTGTGCCTGTCGGTAGAGCTATCGGTGGCCCAGGTGGCGAA
GAAGATGGCGGAAGTGAGGACGGATGCGGTGATTCTACTGGGACCTCAGG
GGGATATGAGAGGAATCTTGACTGATCACGACGTGGCACGGAAAGTTTTG
GGGCAGTCGCTTGATCCAGCTCGAACCCCGGTAGCGTCAATCATGAGCCC
TGACCCCACTTGGGTGAAGGCTACCGATGATGCGTTGGATGCTCTGGCGA
CCATGATCGAGAGGCGTTTCAGGCACTTGCCGGTGAGTCAGGGTCGGTAG
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