mRNA_A-nodosum_M_contig1065.16.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1065.16.2
Unique NamemRNA_A-nodosum_M_contig1065.16.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: A0A6H5JIK9_9PHAE (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIK9_9PHAE)

HSP 1 Score: 369 bits (946), Expect = 1.330e-120
Identity = 195/309 (63.11%), Postives = 237/309 (76.70%), Query Frame = 3
Query:  210 VGLKSASTMVYASTSTLKSKILQLAAVMDRGGMAN---KGVSNAYLGSRDDMRQLVDNLAQLEPVEKPILSAQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXS---------------SGPEGSVKTVDIKGGGGEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRAHCSLKGDNNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTAQVTKQVLGSVPVTKQTVVYIDDDLRVMRDEAGELFIYSR 1082
            + +KS   M   S + +KSK+LQLAA MDRGGMAN   +GVS+AYLG++DDMR LV++LAQL+PV KP+ + +LSG+WEL+YTTVELFRASPFFQMVEAGY+DPEKSN FFKLHQLQTGSWG S+IG              S               +   G+V+  D K G  E+ T +     G +GSLESEVDLI+LPLTS+P++GFWKLLPTFGGCI+T+A CSL GDNNE+V+L+VESTKLKAVEDVPLLP+AGP FEG EFPT +VTK+V+G+VPVTKQTVVYIDD LRVM D+AGEL+IY+R
Sbjct:    1 MAMKSPVRMASDSVAEVKSKVLQLAASMDRGGMANPGNRGVSHAYLGTKDDMRLLVESLAQLDPVNKPLTATELSGRWELVYTTVELFRASPFFQMVEAGYDDPEKSNLFFKLHQLQTGSWGASKIGRVTQTLDLIDSVPPSIEGRDATATPAAEAEAAAAGAVEGSD-KAGVVEDNTDM----SGGSGSLESEVDLIILPLTSVPLVGFWKLLPTFGGCIATKAKCSLAGDNNEVVQLIVESTKLKAVEDVPLLPIAGPLFEGMEFPTGEVTKKVMGNVPVTKQTVVYIDDTLRVMEDKAGELYIYAR 304          
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: A0A0G4EA07_VITBC (PAP_fibrillin domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EA07_VITBC)

HSP 1 Score: 181 bits (458), Expect = 6.510e-48
Identity = 100/280 (35.71%), Postives = 157/280 (56.07%), Query Frame = 3
Query:  246 STSTLKSKILQLAAVMDRGGMANKGVSNAYLGSRDDMRQLVDNLAQLEPVEKPILSAQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXSSGPEGSVKTVDIKGGGGEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRAHCSLKGDNNEIVELVVESTKLKAVEDVPLLPVAGPFF-EGREFPTAQVTKQVLGSVPVTKQTVVYIDDDLRVMRDEAGELFIYSR 1082
            ST+ LK ++LQLAA  DRG  A K         ++ +  +VD+L+   P +       L+G W L+Y + +LFR+SPFF  ++A Y+D +K++ FFKLH+LQT SWG S I                                    T++  +    +G L S+ ++ +LP T +P++G+WKLLPTFGG + + A+ S+ GD N+ ++L V+ TK+KA ED+PL+P+ G F  E      + V K++ GSVP  + T V++D  +R+ +D  GE+F+Y R
Sbjct:   56 STADLKMRLLQLAASTDRGQQATKR-------QKEQISNVVDDLSSRGPFD--CSPGMLNGSWVLVYASAQLFRSSPFFLSIQASYDDSKKASLFFKLHELQTRSWGFSEIAQVGQ-------------------------------TLLFPEANSTDGRLRSDFNIKVLPSTVVPLVGWWKLLPTFGGNVRSIANASISGDANQHLDLTVDLTKVKASEDLPLMPLLGQFLAEQTGIRVSNVWKRLRGSVPTARVTHVFVDSGMRIAKDSQGEVFVYVR 295          
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: W7T369_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T369_9STRA)

HSP 1 Score: 154 bits (389), Expect = 3.040e-38
Identity = 112/331 (33.84%), Postives = 173/331 (52.27%), Query Frame = 3
Query:  111 VVGIVLTCLNP--ASAFLTSASAGGRLTRYQASSNVGLKSASTMVYASTSTLKSKILQLAAVMDRGGMANKGVSNA--YLGSRDDMRQLVDNLAQLEPVEKPILS-AQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXSSGPEGSVKTVDIKGGGGEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRAHCSLKGDNNE----IVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTAQVTKQV----LGSVPVTKQTVVYIDDDLRVMRDEAGE 1064
            V+GI    +NP  +S F++S    GR T    + ++ L S +T    S +++K K+ QLAA+ DRG + +  VS+   Y   R+ M  L++ L       K  +S   L G+WEL+Y+T +LFR+SPFFQ +E  Y DP KS  FFKLH+LQT SWG S+IG                      +T+D++           AQ      +L S  D +L PLT++P+IG++KLLPTFGG + + A      ++++     +E  V  T  K +  +  +P+ G + E ++FPT +    +     G  P     VVY+D+D R++R+  GE
Sbjct:   40 VLGIDKHPINPLTSSLFISSTVHNGRST----ARDLRLFSTATRSSLSVASIKLKVCQLAALTDRGKLQDPLVSDEGLYAAERETMVSLLELLIAKGRERKQAMSPVLLEGEWELVYSTKQLFRSSPFFQAIERAYADPTKSELFFKLHELQTCSWGASQIGRV-------------------AQTIDLQ-----------AQ------TLLSSFDTVLFPLTTIPLIGWFKLLPTFGGRVDSLADGLTVSESSQGTALRLEYAVAKTSFKRLAGLKTMPLLGAWLENKQFPTKEAWNLLPWNWSGPGPRCLVEVVYLDEDFRIVREGGGE 330          
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: A0A061RCL2_9CHLO (Pilus assembly protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RCL2_9CHLO)

HSP 1 Score: 152 bits (384), Expect = 8.370e-38
Identity = 93/281 (33.10%), Postives = 144/281 (51.25%), Query Frame = 3
Query:  258 LKSKILQLAAVMDRGGMANKGVSNAYLGSRDDMRQLVDNLAQLEPVEKPILSAQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXSSGPEGSVKTVDIKGGGGEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRAHCSLKGDNNEIVELVVESTKLKAVEDVP---LLPVAGPFFEGREFPTAQVTKQVL---GSVPVTKQTVVYIDDDLRVMRDEAGELFIYSR 1082
            +K +ILQ +A +DRG + ++ VS+AY G R  + +L+  L   +  E     + ++G+WEL+Y+T +LFR+SPFF  ++A + D EKS  FFKLH LQ  SWG S +G                      + +D +                 +    SE D I+  LT +P+ G++KLLPTFGG + + A           +++ ++ T+++A   +P    LPV G      +FP ++V K +    G  P    TV Y+DD  R+M D  GELF+YSR
Sbjct:   68 IKLQILQHSATLDRGQLHDRLVSDAYEGKRQKILELIQELCSRK-TESRFEKSMIAGEWELVYSTCQLFRSSPFFMAIQAAFADKEKSALFFKLHDLQVKSWGASTVGRV-------------------AQNIDFE-----------------SNQFRSEFDTIIFALTVVPIFGWFKLLPTFGGRVISYAEDLEFDIETGRLDMELKRTRVEAAPGIPNIKKLPVLGRALMDNDFPVSRVWKSLPWNGGRAPKCSVTVKYVDDTFRIMEDPDGELFVYSR 311          
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: A2BX06_PROM5 (Possible Gram-negative pili assembly chaperone n=1 Tax=Prochlorococcus marinus (strain MIT 9515) TaxID=167542 RepID=A2BX06_PROM5)

HSP 1 Score: 149 bits (376), Expect = 1.870e-37
Identity = 99/285 (34.74%), Postives = 147/285 (51.58%), Query Frame = 3
Query:  249 TSTLKSKILQLAAVMDRGGMANKGVSNAYLGSRDDMRQLVDNLAQLEPVEKPILSAQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXSSGPEGSVKTVDIKGGGGEETTIVIAQERGVNGS-LESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRAHCSLKGDNNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTAQVTKQVLGSVPVTKQT------VVYIDDDLRVMRDEAGELFIYSR 1082
            T  +K KI Q+AA+ DRG   NK +S  Y    ++M  L+  L   E +   I   +LSG+WEL+Y+TVELFR+SPFF  +E   ND  KSN FFKLHQLQ GS+G+S IG                                      IAQ    N     S  D I+  L+++P++G++KLLPTFGG + T A      DN+  +++ ++ TK+  VE +  +P+       R +P     K V   +P  K++      ++Y+D+++R+M+D  G +FIY R
Sbjct:    4 TDEVKKKIYQIAAITDRGQRLNKLISPIYQEKLEEMEALIKIL---ECLNFEISEEKLSGEWELIYSTVELFRSSPFFLAIEKALNDEFKSNLFFKLHQLQVGSFGLSTIGR-------------------------------------IAQNIDFNKKEFISTFDTIIFGLSTIPILGWFKLLPTFGGRVITLADDLNLKDNS--LQMNLQKTKVSKVEGLNKIPIFSTLLMDRWYPV----KGVWDKLPWNKESPSCEVSIIYLDEEMRIMKDIYGSIFIYVR 242          
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: A2C2Q8_PROM1 (PAP_fibrillin domain-containing protein n=6 Tax=Prochlorococcus TaxID=1218 RepID=A2C2Q8_PROM1)

HSP 1 Score: 148 bits (374), Expect = 3.860e-37
Identity = 92/277 (33.21%), Postives = 144/277 (51.99%), Query Frame = 3
Query:  258 LKSKILQLAAVMDRGGMANKGVSNAYLGSRDDMRQLVDNLAQLEPVEKPILSAQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXSSGPEGSVKTVDIKGGGGEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRAHCSLKGDNNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTAQVTKQVLGSV--PVTKQTVVYIDDDLRVMRDEAGELFIYSR 1082
            LK+ I Q+AA  DRG   N  ++  Y    ++M++LV++L   +P+   I  + + G+WEL+Y++VELFR+SPFF  +E   ND  KS+ FFKLH LQ GS+G+S +G                                              G + S  D  +  LT++P++G++KLLPTFGG + T A+  L+  NN I+ + +E TK+  V+ +  +P        R +P   V K +  +   P  + +V+Y+D DLR++RD  G LF+Y R
Sbjct:    7 LKALIYQVAAATDRGQRMNAMIAPMYQNKLEEMKKLVEDL---QPLSDEITQSSIEGEWELIYSSVELFRSSPFFLAIEKALNDKSKSDLFFKLHLLQVGSFGLSTVGRVGQYLNF------------------------------------TKGEMISTFDTTIFGLTTIPILGWFKLLPTFGGRVITLAN-KLQLKNN-ILSMELEKTKVSEVDGLGKIPFVNSILMERWYPVKNVWKLLPWNKENPNCEISVIYVDKDLRIIRDMHGALFVYIR 242          
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: A0A4D9CZF7_9STRA (PAP_fibrillin domain-containing protein n=2 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZF7_9STRA)

HSP 1 Score: 149 bits (376), Expect = 4.240e-37
Identity = 99/284 (34.86%), Postives = 150/284 (52.82%), Query Frame = 3
Query:  246 STSTLKSKILQLAAVMDRGGMANKGVSNA--YLGSRDDMRQLVDNLAQLEPVEKPILS-AQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXSSGPEGSVKTVDIKGGGGEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRAHCSLKGDNNE----IVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTAQVTKQV----LGSVPVTKQTVVYIDDDLRVMRDEAGE 1064
            S +++K K+ QLAA+ DRG + +  VS+   Y   R+ M  L++ L       K  +S   L G+WEL+Y+T +LFR+SPFFQ +E  Y DP KS  FFKLH+LQT SWG S+IG                      +T+D++           AQ      +L S  D +L PLT++P+IG++KLLPTFGG + + A      ++ +     +E  V  T  K +  +  +P+ G + E ++FPT +    +     GS P     VVY+D+D R++R+  GE
Sbjct:   12 SVASIKLKVCQLAALTDRGKLQDPLVSDEGLYAAERETMVSLLELLIAKGRERKQAMSPVLLEGEWELVYSTKQLFRSSPFFQAIERAYADPTKSELFFKLHELQTCSWGASQIGRV-------------------AQTIDLQ-----------AQ------TLLSSFDTVLFPLTTIPLIGWFKLLPTFGGRVLSLADGLTVSESAQGTALRLEYAVAKTSFKRLAGLKTMPLLGAWLENKQFPTKEAWNLLPWNWSGSGPRCLVEVVYLDEDFRIVREGGGE 259          
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: A0A7S4FT55_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FT55_9EUGL)

HSP 1 Score: 152 bits (384), Expect = 1.140e-36
Identity = 104/285 (36.49%), Postives = 152/285 (53.33%), Query Frame = 3
Query:  243 ASTSTLKSKILQLAAVMDRGGMANKGVSNAYLGSRDDMRQLVDNLAQLEPVEKPILSAQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXSSGPEGSVKTVDIKGGGGEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRA-HCSLKGDNNEIVELVVESTKLKAVEDVPLLP-VAGPFFEGREFPTAQVTKQVLG---SVPVTKQTVVYIDDDLRVMRDEAGELFIYSR 1082
            A+ + LK KIL +AA+ DRG    K VS+A     D M+ LV  L    P    I   +++GKWEL+Y++VELFR+SPFF  +E  +NDP KS+ FFKLH LQ GSWG+S IG                      + +D +    +ET             +ES+ D  +  LT +P++G++KLLPTFGG + T A +  L+GD   ++ + +E T++     VP +P VAG   +  ++       Q+L      P     ++Y+DDD RV+ D+ G LFIY R
Sbjct:  196 AALAELKRKILHVAALTDRGQRHLKIVSDAMKDREDMMKDLVKELVDNHPCY--ISEQKVAGKWELVYSSVELFRSSPFFLAIEQAFNDPSKSDLFFKLHLLQVGSWGVSTIGEVS-------------------QRIDFE----KET-------------MESDFDTTIFGLTVIPIVGWFKLLPTFGGRVVTEAKNLKLEGD---MLSMELERTQVINAPGVPRIPFVAGAVMD--KWVPVNAVWQLLPWNKEKPTCSVRLLYVDDDFRVVEDQTGGLFIYMR 437          
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: A0A7S2Q3B1_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2Q3B1_9DINO)

HSP 1 Score: 146 bits (368), Expect = 1.880e-36
Identity = 91/274 (33.21%), Postives = 139/274 (50.73%), Query Frame = 3
Query:  276 QLAAVMDRGGMANKGVSNAYLGSRDDMRQLVDNLAQLEPVEKPILSAQLSGKWELLYTTVE--LFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXSSGPEGSVKTVDIKGGGGEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRAHCSLKGDNNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTAQVTKQVL---GSVPVTKQTVVYIDDDLRVMRDEAGELFIYSR 1082
            +LAA +DRG   N    + Y    +  R L++ +    P   P   A++ G+WEL+++TV+  +FR+SPFF  V+      ++S+ FFKLH+LQ  SWGIS++G                                     V        G L SE D  LL LT++P+IGFWKLLPTFGGC+ T +   L GD    +++ V+ T+ + V  +P  P+AG    G+  P   + + +    G  PV    + Y+D+D+R++ D  GELF+Y+R
Sbjct:    1 RLAAALDRGQAYNPTSGDHYAERMETARSLIEEIISEAP-PPPTSLAEIDGEWELVFSTVKHGIFRSSPFFLAVQEALGGRDQSDLFFKLHELQVMSWGISKVGR------------------------------------VAQYINSTEGKLYSEFDTSLLSLTTIPIIGFWKLLPTFGGCVVTASDVGLNGDR---LDMEVQWTEAREVPGLP--PLAGAIL-GQRVPVNSIWQALPWNEGRRPVCSVALRYLDEDMRIVADNDGELFVYTR 231          
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: Q31AK5_PROM9 (Gram-negative pili assembly chaperone-like protein n=38 Tax=Prochlorococcus TaxID=1218 RepID=Q31AK5_PROM9)

HSP 1 Score: 146 bits (369), Expect = 2.100e-36
Identity = 95/281 (33.81%), Postives = 145/281 (51.60%), Query Frame = 3
Query:  258 LKSKILQLAAVMDRGGMANKGVSNAYLGSRDDMRQLVDNLAQLEPVEKPILSAQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXSSGPEGSVKTVDIKGGGGEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRAHCSLKGDNNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTAQVTKQVLGSVPVTKQT------VVYIDDDLRVMRDEAGELFIYSR 1082
            +KS I ++AAV DRG   NK +S  Y    ++M +L+D+L  L      I    LSG+WEL+++ VELFR+SPFF  +E   ND  KSN FFKLHQLQ GS+GIS IG                      + +D                   N    S  D  +  LT++P++G++KLLPTFGG + T A   +  +N+  +++ ++ TK+  V+ +  +P        R +P     K V   +P  K++      +VY+D+++R+M+D  G +FIY R
Sbjct:    7 IKSNIYKIAAVTDRGQRLNKLISPMYEEKNNEMVELIDDLKNLS---FEISEKSLSGEWELIFSNVELFRSSPFFLAIENALNDEFKSNLFFKLHQLQVGSFGISTIGRI-------------------AQKIDFD-----------------NKEFISTFDTTIFGLTTIPILGWFKLLPTFGGRVITLASDLVLKNNS--LDMNLQKTKVSKVDGLNKIPFFSELLMDRWYPV----KDVWNKLPWNKESPNCHVSIVYLDEEMRIMQDMYGSIFIYIR 242          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIK9_9PHAE1.330e-12063.11PAP_fibrillin domain-containing protein n=2 Tax=Ec... [more]
A0A0G4EA07_VITBC6.510e-4835.71PAP_fibrillin domain-containing protein n=1 Tax=Vi... [more]
W7T369_9STRA3.040e-3833.84Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A061RCL2_9CHLO8.370e-3833.10Pilus assembly protein n=1 Tax=Tetraselmis sp. GSL... [more]
A2BX06_PROM51.870e-3734.74Possible Gram-negative pili assembly chaperone n=1... [more]
A2C2Q8_PROM13.860e-3733.21PAP_fibrillin domain-containing protein n=6 Tax=Pr... [more]
A0A4D9CZF7_9STRA4.240e-3734.86PAP_fibrillin domain-containing protein n=2 Tax=Na... [more]
A0A7S4FT55_9EUGL1.140e-3636.49Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S2Q3B1_9DINO1.880e-3633.21Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
Q31AK5_PROM92.100e-3633.81Gram-negative pili assembly chaperone-like protein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1065contigA-nodosum_M_contig1065:85915..90719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRM1
Model size1839
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons8
Evalue1.6e-127
EggNOG OGs2A2EM@1|root,2RXHW@2759|Eukaryota
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-12_000330.1
Cds size1050
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1065.16.2prot_A-nodosum_M_contig1065.16.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1065 86630..90645 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866451.3135734-UTR-A-nodosum_M_contig1065:85914..866291680866451.3135734-UTR-A-nodosum_M_contig1065:85914..86629Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1065 85915..86629 -
1680866451.4024656-UTR-A-nodosum_M_contig1065:90645..907191680866451.4024656-UTR-A-nodosum_M_contig1065:90645..90719Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1065 90646..90719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866451.325424-CDS-A-nodosum_M_contig1065:86629..866721680866451.325424-CDS-A-nodosum_M_contig1065:86629..86672Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1065 86630..86672 -
1680866451.3346605-CDS-A-nodosum_M_contig1065:86966..870671680866451.3346605-CDS-A-nodosum_M_contig1065:86966..87067Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1065 86967..87067 -
1680866451.3460019-CDS-A-nodosum_M_contig1065:87305..874161680866451.3460019-CDS-A-nodosum_M_contig1065:87305..87416Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1065 87306..87416 -
1680866451.3540754-CDS-A-nodosum_M_contig1065:87773..879051680866451.3540754-CDS-A-nodosum_M_contig1065:87773..87905Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1065 87774..87905 -
1680866451.362793-CDS-A-nodosum_M_contig1065:88167..883111680866451.362793-CDS-A-nodosum_M_contig1065:88167..88311Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1065 88168..88311 -
1680866451.3726022-CDS-A-nodosum_M_contig1065:88477..885821680866451.3726022-CDS-A-nodosum_M_contig1065:88477..88582Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1065 88478..88582 -
1680866451.3815432-CDS-A-nodosum_M_contig1065:89009..891791680866451.3815432-CDS-A-nodosum_M_contig1065:89009..89179Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1065 89010..89179 -
1680866451.3925536-CDS-A-nodosum_M_contig1065:90401..906451680866451.3925536-CDS-A-nodosum_M_contig1065:90401..90645Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1065 90402..90645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1065.16.2

>prot_A-nodosum_M_contig1065.16.2 ID=prot_A-nodosum_M_contig1065.16.2|Name=mRNA_A-nodosum_M_contig1065.16.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=350bp
MVPTARFSVYRVVVGIVLTCLNPASAFLTSASAGGRLTRYQASSNVGLKS
ASTMVYASTSTLKSKILQLAAVMDRGGMANKGVSNAYLGSRDDMRQLVDN
LAQLEPVEKPILSAQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSN
QFFKLHQLQTGSWGISRIGRITQVVDLVDPAEPSSGPEGSVKTVDIKGGG
GEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCIST
RAHCSLKGDNNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTAQVT
KQVLGSVPVTKQTVVYIDDDLRVMRDEAGELFIYSRFDGPTDRNEGGPL*
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mRNA from alignment at A-nodosum_M_contig1065:85915..90719-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1065.16.2 ID=mRNA_A-nodosum_M_contig1065.16.2|Name=mRNA_A-nodosum_M_contig1065.16.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4805bp|location=Sequence derived from alignment at A-nodosum_M_contig1065:85915..90719- (Ascophyllum nodosum dioecious)
CCGAGAGGCAGCTACTGTAGAAATATTCGGCATTCAACCTCACGAGCATC GTCCCATATTTTTACTGGCGTAATATGGTTCCAACTGCTCGTTTCTCTGT CTATCGTGTTGTAGTTGGCATTGTGTTGACGTGCTTGAATCCTGCGTCCG CGTTCCTTACGTCAGCATCTGCCGGCGGCCGCCTGACTCGATATCAAGCT AGCTCGAATGTCGGTTTGAAATCAGCCAGTACTATGGTCTATGCAAGTAC GTCCACCCTCAAGAGCAAGATTCTTCAGCTCGCGGCTGTCATGGACAGGG GTGGTATGGCGAATAAAGGTAAGGCAAAACATGCTAGAAAAGAGGGGAGA CGACATTTCGTAACGTCATGAACTCCGCAAGGCGAACATTCAGATTTTTC TTTAAACTGCTGTAGCAAGCAAAACTCCTCCAGAAAAATGTACTTACATA TTACATATTACATACCAGGTACCTGTTATTTTTCCTAATCACATATTACA GTACTGAAATCCAGACGCCATGCGTAAAATACCAAGTGCTCATACGAACT TATGTATGTTCATTCAGCTGACCGCGGGTAAGGTTGCCAATCCTGCTCGT GGTCAGCTAAACAGGGAAAACTGATAGTTCCCTGTCCCCGTTCGCGCCTG AGAACTTGATCTCGCGAGATGGGTTCGGCAGCCCTGTCGGGAATCCTGCG TCAGCCTGCTCATCTTTATACTCAGGCTGAATCTGTTGCTTACTTACGGG ATCCCTCCCGAGTTCCGCGGCGGCGTCCATTTATTTATTTAAACCGCCAT ACGCCATCGGGTCAGTCCCGAGTTTATCGGGTCACGCAATTGCGTACCGA TGGCATTCACTGCCGAGAGTTCGCCAGCACAGGGCCAGTAAACCTTAAGG TAGTTCCAGTAACGGGTGCTGCCTTTGCATCACCATGGACCAATTAATAT GCGCCTCTTTCCCACACCCACTGTATTGGTACCTGACTTCGTGCTATTAA TACTAAATAAAGTACGAGTAGAAGGTTTCAAAGTATGTTAAAAAAGAGTG TTTGTACGTGTACGAAAGAAGTGTAGAGCAAAACATACAGTTTTTGTACT ATCAAGTAGAGCCAGTAGTGCCACTCTTGGTTAACGTGTAAGTATCCTAG GTCTGTGCTCGTCTACCACCTCCCAAGAGCAATACAATTAATCACAAAAC CATTGTATCAGTAGCTCTGTAAGTAATGGCGCAAAAAAGAACTGAGGTTC ACATACTATTCCTACTAGAGAAGGGGCGAACTTAGTCCAGTACAATGAGG CAGCACTGTTTCGTGAGAAACGTCTAACAAAATTAGAGGTAACGTGCACA GGGAAGAAGATACACGATATGTTCTGCAATGTAACATCGGTTTCTTATCC GGACATACAGCTTAAGTATGTCCTATTAATAGTATATACTAAATGGGCAT CAACCCGTAATCGTGCCGGTAGCCTCTTCTATACTTCTCTTCAACTGAAC CAAGAGGTGTAGATAATAATTTACGAGTAACGATCCGCAGGCGTTTCGAA TGCTTACTTGGGCTCGAGAGACGACATGCGACAGCTTGTGGACAACCTTG CGCAGTTGGAACCCGTGGAGAAACCAATTTTGTCTGCGCAACTCAGCGGA AAGTGGGAGCTGCTGTACACCACGGTGGAGCTCTTTCGGGCTTCCCCGTT TTTCCAGATGGTGAGCGTCGATCTACGTTTCGCTGCTGCCTCCTGCTGTT TCTGTGCGTTGAGCTACATACCAGACGCTATTTGTAGTGTGGGCAGTCCA GTAAGTCCCGCTTAGAGGTATGCTCTGATGGACGTTGAGCAAGCGTCGAG AGCGTTGCTACTTGGTGAATCAGATGTGAAGCGCGACTTTCAAATCGAGA CCGTGTAGTGTAAACGGTTCATGCGAAGGCCCATGAAAACCTTCCCGGCG CATGCGGTAGCCCCTCCGCCGTAGGTGAGTGGTGGAAGTAATTTCAGCAG CGCTGCTTGAGGGATTCCCGTCTCCACAGAGAGCGCGTGTGCTGGGAAAT ACATCTCTAAGTCACACGGCGGGAAAAATATATGAACATGCCGAGATTCA GTGTTGGCTCCGACTCGGGCTCTGAATCCTGAAGTAGGTGGAGGCCGGCT ATAATGACCCAGAGAAGTCGAACCAGTTCTTCAAGCTTCATCAGCTGCAA ACGGGATCGTGGGGTATCAGTCGCATCGGTCGCATAACGCAGGTGAGAGA AACTGACACTATATTACGCGCGTGTATTTTGAGGGCGAGGGACCGGTATC CTGCTCTGCTGCTGCTCCTAGCGTTACGACACCTCGATGATATTATTGAC GACGTTTCACGCCGCCCTCGCGATCGGTCGGCTGGTATTTCTCGCGGGCA ATGCATAGGTCGTCGACCTGGTTGACCCGGCTGAGCCGAGCTCCGGTCCA GAGGGCAGCGTGAAAACCGTGGATATTAAAGGGGGAGGAGGAGAAGAAAC AACGATTGTGATAGCTCAAGAACGCGGTGTTAATGGTTCCTTGGAATCGG AGGTGAGCCTGCGAGGGCCTTGTGCAGGCGGTGTGGTAAAGATCCTCGCT GACCCTACCCCTTCTTGCCGCGAAAGTTTTGGAGGGTTCTGATGACGGCC TCCAGTCACTCGCGCTCGGCGGGAGGCAAACACCCTGTCAAGGGTATCCC CATATCATGCAACAAGCCAGCGGTGCAAAATATCATCGGTCGAGGTCTGA ACGTGAAAAAATAATATCGCATTCTTCGGCACCACCTTCATCTTGCCCAT GCTTCTTCCGATAGGTGGATCTTATTCTTCTGCCCCTGACTTCCCTTCCC GTCATCGGCTTCTGGAAGCTCTTGCCCACGTTTGGTGGCTGTATTTCGAC TAGGGCCCACTGCTCGCTCAAGGGGGACAATAACGAAATCGTCGAGGTTT GTGCGATCGGGTACGGGGGTCGTTCAACTGACTATTGATTCCCGTCCCAC CCATAGATTCGTGCCAGTATTCGACAGCAACCGGCAGATGTGGACGGCGA AGACATCGCACTTTGATGTGAATCACCTCATCCTTTCCCTCCGGTCTGTG TGATTCAACCGCGACGGTCTCTTGATCGTGGCTAACCTTAAAAGAGCGTC CGAGTTCTAATTATTCCGCAACATGCTGAAGCATCTTCATTCGCGGCTTG GTGCACGATCAGGGGTGCCATGCGTCAGCTTTATCTGCAAAGCATGTTGA AGGTTCCACCCGCCGCTAACCAGTCGCATTTCTGCTCTTGTCACGGACGA TAGCTGGTCGTGGAGTCGACGAAACTGAAGGCGGTAGAGGATGTGCCGCT CCTTCCGGTGGCGGGGCCTTTTTTCGAAGGCAGAGAATTTCCCACGGCAC AGGTCACGAAGCAGGTGAGCAAAACCAAATGCCCACGATGGCGCATCTGG TGTGTTTTTGTTTCTCAGAGGGAACCTCTTTTTAAACGATTTTTATCTTC TACCTTCCCACCGAAGGGTTTTGGGAGACAGGTTTCTCCTTCACTGTTTG TCGACGCTGATATGATACCTCGGGTTCTGCCCATTGCTCGCTCGAGGAGC GGTACGTATCACACTTGCCGCTTGGATATGCGGCACACGTACTCGTCGAC AGGTGCTAGGAAGCGTTCCAGTAACGAAACAGACGGTCGTGTACATCGAT GACGACCTGCGGGTTATGCGAGACGAAGCTGGCGAATTGTTCATCTATTC CAGGCAAGAAGAAACTTCACTGTAGTACTCAGAAGCACTGCCGACTCACG CTGGTTGTGTCTCTGCTATCGATTACTGTCAGGAATGAGACATGCTGTGC ACACCCCATCAATTTCATTGATTTGCGCAACTGTGAATGAACTGGTTACT ACACCCCGTTTGACCAGGATACATATAGTGGCAGGCTCTCGGCCCGTTCA CGAACGCTGAGCTGCCGCTCCGATAAGATAATAAAAGCCCATGGTTGGGT CAGTTACCGACCTCTTCTTATCCCGCGCCGTCGGCAGGCCGCTACAGATT TGACGGGCCGACGGACAGGAATGAAGGCGGGCCGCTATGAAACACTGTCT TCCACGCGATCATGGGAGAGTCGAATTGTAAATGGGATAAAAAAAGAGGA GGCCGATAGAGAAGGCCTCGATGATACCTCCGTAGCCCTTAAATGTACAG CGCGTGCTGCCGTCCGCAGTTGAACAGATTTTGATGTTTCTCTGTAGAAC GTACAGAGTGCGTGCTGTCGTCAACCGTTGGATCCACTTTGACTTTTCTC TACCTTCACGCGCCTAGAAGCTCCCGAGCTCTCTCAAGCCTTCTAAGAGA AAGCAGTTACTTATATATATATATTTCTGCGCATCACTTGATGATATTTA TTCCAACGCGACGTCTTGTAGACTTGGAATATTAGATCCGAGACCGTGTT GGAGAAGATAACTCGGCCAATGAAAGGGGGCAACTCGACGTGCATCAGCT TCGTGTGCGTTCGTGTTTACGTGTCTCTCTGTAATGCCCCTCGATGATCC ATTGCTGATGATTGCACCTTATGAATCGTACTTGGGGATAACCTGTTTCG ATAGCGCTCCCATATGCATGCATAAGTTTGTTCATTGCAAACGTGCTTTG ACCTCAAAAGGCTGACGCTACGCTCTCTCTATAATAGTGACGTCGATGTT TTTTTAGCAGAGTGCATACCTTCTCATGTTTCCGCACTCGTATTTTTTCC GTGTTTATGAGAAGGCAGCAGCGCCTTAGATTTTTTCCCACTTCCGAAAA GCACC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1065:85915..90719-

>mRNA_A-nodosum_M_contig1065.16.2 ID=mRNA_A-nodosum_M_contig1065.16.2|Name=mRNA_A-nodosum_M_contig1065.16.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1050bp|location=Sequence derived from alignment at A-nodosum_M_contig1065:85915..90719- (Ascophyllum nodosum dioecious)
ATGGTTCCAACTGCTCGTTTCTCTGTCTATCGTGTTGTAGTTGGCATTGT
GTTGACGTGCTTGAATCCTGCGTCCGCGTTCCTTACGTCAGCATCTGCCG
GCGGCCGCCTGACTCGATATCAAGCTAGCTCGAATGTCGGTTTGAAATCA
GCCAGTACTATGGTCTATGCAAGTACGTCCACCCTCAAGAGCAAGATTCT
TCAGCTCGCGGCTGTCATGGACAGGGGTGGTATGGCGAATAAAGGCGTTT
CGAATGCTTACTTGGGCTCGAGAGACGACATGCGACAGCTTGTGGACAAC
CTTGCGCAGTTGGAACCCGTGGAGAAACCAATTTTGTCTGCGCAACTCAG
CGGAAAGTGGGAGCTGCTGTACACCACGGTGGAGCTCTTTCGGGCTTCCC
CGTTTTTCCAGATGGTGGAGGCCGGCTATAATGACCCAGAGAAGTCGAAC
CAGTTCTTCAAGCTTCATCAGCTGCAAACGGGATCGTGGGGTATCAGTCG
CATCGGTCGCATAACGCAGGTCGTCGACCTGGTTGACCCGGCTGAGCCGA
GCTCCGGTCCAGAGGGCAGCGTGAAAACCGTGGATATTAAAGGGGGAGGA
GGAGAAGAAACAACGATTGTGATAGCTCAAGAACGCGGTGTTAATGGTTC
CTTGGAATCGGAGGTGGATCTTATTCTTCTGCCCCTGACTTCCCTTCCCG
TCATCGGCTTCTGGAAGCTCTTGCCCACGTTTGGTGGCTGTATTTCGACT
AGGGCCCACTGCTCGCTCAAGGGGGACAATAACGAAATCGTCGAGCTGGT
CGTGGAGTCGACGAAACTGAAGGCGGTAGAGGATGTGCCGCTCCTTCCGG
TGGCGGGGCCTTTTTTCGAAGGCAGAGAATTTCCCACGGCACAGGTCACG
AAGCAGGTGCTAGGAAGCGTTCCAGTAACGAAACAGACGGTCGTGTACAT
CGATGACGACCTGCGGGTTATGCGAGACGAAGCTGGCGAATTGTTCATCT
ATTCCAGATTTGACGGGCCGACGGACAGGAATGAAGGCGGGCCGCTATGA
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