mRNA_A-nodosum_M_contig1065.16.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: A0A6H5JIK9_9PHAE (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIK9_9PHAE) HSP 1 Score: 369 bits (946), Expect = 1.330e-120 Identity = 195/309 (63.11%), Postives = 237/309 (76.70%), Query Frame = 3
Query: 210 VGLKSASTMVYASTSTLKSKILQLAAVMDRGGMAN---KGVSNAYLGSRDDMRQLVDNLAQLEPVEKPILSAQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXS---------------SGPEGSVKTVDIKGGGGEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRAHCSLKGDNNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTAQVTKQVLGSVPVTKQTVVYIDDDLRVMRDEAGELFIYSR 1082
+ +KS M S + +KSK+LQLAA MDRGGMAN +GVS+AYLG++DDMR LV++LAQL+PV KP+ + +LSG+WEL+YTTVELFRASPFFQMVEAGY+DPEKSN FFKLHQLQTGSWG S+IG S + G+V+ D K G E+ T + G +GSLESEVDLI+LPLTS+P++GFWKLLPTFGGCI+T+A CSL GDNNE+V+L+VESTKLKAVEDVPLLP+AGP FEG EFPT +VTK+V+G+VPVTKQTVVYIDD LRVM D+AGEL+IY+R
Sbjct: 1 MAMKSPVRMASDSVAEVKSKVLQLAASMDRGGMANPGNRGVSHAYLGTKDDMRLLVESLAQLDPVNKPLTATELSGRWELVYTTVELFRASPFFQMVEAGYDDPEKSNLFFKLHQLQTGSWGASKIGRVTQTLDLIDSVPPSIEGRDATATPAAEAEAAAAGAVEGSD-KAGVVEDNTDM----SGGSGSLESEVDLIILPLTSVPLVGFWKLLPTFGGCIATKAKCSLAGDNNEVVQLIVESTKLKAVEDVPLLPIAGPLFEGMEFPTGEVTKKVMGNVPVTKQTVVYIDDTLRVMEDKAGELYIYAR 304
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: A0A0G4EA07_VITBC (PAP_fibrillin domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EA07_VITBC) HSP 1 Score: 181 bits (458), Expect = 6.510e-48 Identity = 100/280 (35.71%), Postives = 157/280 (56.07%), Query Frame = 3
Query: 246 STSTLKSKILQLAAVMDRGGMANKGVSNAYLGSRDDMRQLVDNLAQLEPVEKPILSAQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXSSGPEGSVKTVDIKGGGGEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRAHCSLKGDNNEIVELVVESTKLKAVEDVPLLPVAGPFF-EGREFPTAQVTKQVLGSVPVTKQTVVYIDDDLRVMRDEAGELFIYSR 1082
ST+ LK ++LQLAA DRG A K ++ + +VD+L+ P + L+G W L+Y + +LFR+SPFF ++A Y+D +K++ FFKLH+LQT SWG S I T++ + +G L S+ ++ +LP T +P++G+WKLLPTFGG + + A+ S+ GD N+ ++L V+ TK+KA ED+PL+P+ G F E + V K++ GSVP + T V++D +R+ +D GE+F+Y R
Sbjct: 56 STADLKMRLLQLAASTDRGQQATKR-------QKEQISNVVDDLSSRGPFD--CSPGMLNGSWVLVYASAQLFRSSPFFLSIQASYDDSKKASLFFKLHELQTRSWGFSEIAQVGQ-------------------------------TLLFPEANSTDGRLRSDFNIKVLPSTVVPLVGWWKLLPTFGGNVRSIANASISGDANQHLDLTVDLTKVKASEDLPLMPLLGQFLAEQTGIRVSNVWKRLRGSVPTARVTHVFVDSGMRIAKDSQGEVFVYVR 295
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: W7T369_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T369_9STRA) HSP 1 Score: 154 bits (389), Expect = 3.040e-38 Identity = 112/331 (33.84%), Postives = 173/331 (52.27%), Query Frame = 3
Query: 111 VVGIVLTCLNP--ASAFLTSASAGGRLTRYQASSNVGLKSASTMVYASTSTLKSKILQLAAVMDRGGMANKGVSNA--YLGSRDDMRQLVDNLAQLEPVEKPILS-AQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXSSGPEGSVKTVDIKGGGGEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRAHCSLKGDNNE----IVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTAQVTKQV----LGSVPVTKQTVVYIDDDLRVMRDEAGE 1064
V+GI +NP +S F++S GR T + ++ L S +T S +++K K+ QLAA+ DRG + + VS+ Y R+ M L++ L K +S L G+WEL+Y+T +LFR+SPFFQ +E Y DP KS FFKLH+LQT SWG S+IG +T+D++ AQ +L S D +L PLT++P+IG++KLLPTFGG + + A ++++ +E V T K + + +P+ G + E ++FPT + + G P VVY+D+D R++R+ GE
Sbjct: 40 VLGIDKHPINPLTSSLFISSTVHNGRST----ARDLRLFSTATRSSLSVASIKLKVCQLAALTDRGKLQDPLVSDEGLYAAERETMVSLLELLIAKGRERKQAMSPVLLEGEWELVYSTKQLFRSSPFFQAIERAYADPTKSELFFKLHELQTCSWGASQIGRV-------------------AQTIDLQ-----------AQ------TLLSSFDTVLFPLTTIPLIGWFKLLPTFGGRVDSLADGLTVSESSQGTALRLEYAVAKTSFKRLAGLKTMPLLGAWLENKQFPTKEAWNLLPWNWSGPGPRCLVEVVYLDEDFRIVREGGGE 330
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: A0A061RCL2_9CHLO (Pilus assembly protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RCL2_9CHLO) HSP 1 Score: 152 bits (384), Expect = 8.370e-38 Identity = 93/281 (33.10%), Postives = 144/281 (51.25%), Query Frame = 3
Query: 258 LKSKILQLAAVMDRGGMANKGVSNAYLGSRDDMRQLVDNLAQLEPVEKPILSAQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXSSGPEGSVKTVDIKGGGGEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRAHCSLKGDNNEIVELVVESTKLKAVEDVP---LLPVAGPFFEGREFPTAQVTKQVL---GSVPVTKQTVVYIDDDLRVMRDEAGELFIYSR 1082
+K +ILQ +A +DRG + ++ VS+AY G R + +L+ L + E + ++G+WEL+Y+T +LFR+SPFF ++A + D EKS FFKLH LQ SWG S +G + +D + + SE D I+ LT +P+ G++KLLPTFGG + + A +++ ++ T+++A +P LPV G +FP ++V K + G P TV Y+DD R+M D GELF+YSR
Sbjct: 68 IKLQILQHSATLDRGQLHDRLVSDAYEGKRQKILELIQELCSRK-TESRFEKSMIAGEWELVYSTCQLFRSSPFFMAIQAAFADKEKSALFFKLHDLQVKSWGASTVGRV-------------------AQNIDFE-----------------SNQFRSEFDTIIFALTVVPIFGWFKLLPTFGGRVISYAEDLEFDIETGRLDMELKRTRVEAAPGIPNIKKLPVLGRALMDNDFPVSRVWKSLPWNGGRAPKCSVTVKYVDDTFRIMEDPDGELFVYSR 311
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: A2BX06_PROM5 (Possible Gram-negative pili assembly chaperone n=1 Tax=Prochlorococcus marinus (strain MIT 9515) TaxID=167542 RepID=A2BX06_PROM5) HSP 1 Score: 149 bits (376), Expect = 1.870e-37 Identity = 99/285 (34.74%), Postives = 147/285 (51.58%), Query Frame = 3
Query: 249 TSTLKSKILQLAAVMDRGGMANKGVSNAYLGSRDDMRQLVDNLAQLEPVEKPILSAQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXSSGPEGSVKTVDIKGGGGEETTIVIAQERGVNGS-LESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRAHCSLKGDNNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTAQVTKQVLGSVPVTKQT------VVYIDDDLRVMRDEAGELFIYSR 1082
T +K KI Q+AA+ DRG NK +S Y ++M L+ L E + I +LSG+WEL+Y+TVELFR+SPFF +E ND KSN FFKLHQLQ GS+G+S IG IAQ N S D I+ L+++P++G++KLLPTFGG + T A DN+ +++ ++ TK+ VE + +P+ R +P K V +P K++ ++Y+D+++R+M+D G +FIY R
Sbjct: 4 TDEVKKKIYQIAAITDRGQRLNKLISPIYQEKLEEMEALIKIL---ECLNFEISEEKLSGEWELIYSTVELFRSSPFFLAIEKALNDEFKSNLFFKLHQLQVGSFGLSTIGR-------------------------------------IAQNIDFNKKEFISTFDTIIFGLSTIPILGWFKLLPTFGGRVITLADDLNLKDNS--LQMNLQKTKVSKVEGLNKIPIFSTLLMDRWYPV----KGVWDKLPWNKESPSCEVSIIYLDEEMRIMKDIYGSIFIYVR 242
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: A2C2Q8_PROM1 (PAP_fibrillin domain-containing protein n=6 Tax=Prochlorococcus TaxID=1218 RepID=A2C2Q8_PROM1) HSP 1 Score: 148 bits (374), Expect = 3.860e-37 Identity = 92/277 (33.21%), Postives = 144/277 (51.99%), Query Frame = 3
Query: 258 LKSKILQLAAVMDRGGMANKGVSNAYLGSRDDMRQLVDNLAQLEPVEKPILSAQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXSSGPEGSVKTVDIKGGGGEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRAHCSLKGDNNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTAQVTKQVLGSV--PVTKQTVVYIDDDLRVMRDEAGELFIYSR 1082
LK+ I Q+AA DRG N ++ Y ++M++LV++L +P+ I + + G+WEL+Y++VELFR+SPFF +E ND KS+ FFKLH LQ GS+G+S +G G + S D + LT++P++G++KLLPTFGG + T A+ L+ NN I+ + +E TK+ V+ + +P R +P V K + + P + +V+Y+D DLR++RD G LF+Y R
Sbjct: 7 LKALIYQVAAATDRGQRMNAMIAPMYQNKLEEMKKLVEDL---QPLSDEITQSSIEGEWELIYSSVELFRSSPFFLAIEKALNDKSKSDLFFKLHLLQVGSFGLSTVGRVGQYLNF------------------------------------TKGEMISTFDTTIFGLTTIPILGWFKLLPTFGGRVITLAN-KLQLKNN-ILSMELEKTKVSEVDGLGKIPFVNSILMERWYPVKNVWKLLPWNKENPNCEISVIYVDKDLRIIRDMHGALFVYIR 242
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: A0A4D9CZF7_9STRA (PAP_fibrillin domain-containing protein n=2 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZF7_9STRA) HSP 1 Score: 149 bits (376), Expect = 4.240e-37 Identity = 99/284 (34.86%), Postives = 150/284 (52.82%), Query Frame = 3
Query: 246 STSTLKSKILQLAAVMDRGGMANKGVSNA--YLGSRDDMRQLVDNLAQLEPVEKPILS-AQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXSSGPEGSVKTVDIKGGGGEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRAHCSLKGDNNE----IVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTAQVTKQV----LGSVPVTKQTVVYIDDDLRVMRDEAGE 1064
S +++K K+ QLAA+ DRG + + VS+ Y R+ M L++ L K +S L G+WEL+Y+T +LFR+SPFFQ +E Y DP KS FFKLH+LQT SWG S+IG +T+D++ AQ +L S D +L PLT++P+IG++KLLPTFGG + + A ++ + +E V T K + + +P+ G + E ++FPT + + GS P VVY+D+D R++R+ GE
Sbjct: 12 SVASIKLKVCQLAALTDRGKLQDPLVSDEGLYAAERETMVSLLELLIAKGRERKQAMSPVLLEGEWELVYSTKQLFRSSPFFQAIERAYADPTKSELFFKLHELQTCSWGASQIGRV-------------------AQTIDLQ-----------AQ------TLLSSFDTVLFPLTTIPLIGWFKLLPTFGGRVLSLADGLTVSESAQGTALRLEYAVAKTSFKRLAGLKTMPLLGAWLENKQFPTKEAWNLLPWNWSGSGPRCLVEVVYLDEDFRIVREGGGE 259
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: A0A7S4FT55_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FT55_9EUGL) HSP 1 Score: 152 bits (384), Expect = 1.140e-36 Identity = 104/285 (36.49%), Postives = 152/285 (53.33%), Query Frame = 3
Query: 243 ASTSTLKSKILQLAAVMDRGGMANKGVSNAYLGSRDDMRQLVDNLAQLEPVEKPILSAQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXSSGPEGSVKTVDIKGGGGEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRA-HCSLKGDNNEIVELVVESTKLKAVEDVPLLP-VAGPFFEGREFPTAQVTKQVLG---SVPVTKQTVVYIDDDLRVMRDEAGELFIYSR 1082
A+ + LK KIL +AA+ DRG K VS+A D M+ LV L P I +++GKWEL+Y++VELFR+SPFF +E +NDP KS+ FFKLH LQ GSWG+S IG + +D + +ET +ES+ D + LT +P++G++KLLPTFGG + T A + L+GD ++ + +E T++ VP +P VAG + ++ Q+L P ++Y+DDD RV+ D+ G LFIY R
Sbjct: 196 AALAELKRKILHVAALTDRGQRHLKIVSDAMKDREDMMKDLVKELVDNHPCY--ISEQKVAGKWELVYSSVELFRSSPFFLAIEQAFNDPSKSDLFFKLHLLQVGSWGVSTIGEVS-------------------QRIDFE----KET-------------MESDFDTTIFGLTVIPIVGWFKLLPTFGGRVVTEAKNLKLEGD---MLSMELERTQVINAPGVPRIPFVAGAVMD--KWVPVNAVWQLLPWNKEKPTCSVRLLYVDDDFRVVEDQTGGLFIYMR 437
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: A0A7S2Q3B1_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2Q3B1_9DINO) HSP 1 Score: 146 bits (368), Expect = 1.880e-36 Identity = 91/274 (33.21%), Postives = 139/274 (50.73%), Query Frame = 3
Query: 276 QLAAVMDRGGMANKGVSNAYLGSRDDMRQLVDNLAQLEPVEKPILSAQLSGKWELLYTTVE--LFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXSSGPEGSVKTVDIKGGGGEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRAHCSLKGDNNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTAQVTKQVL---GSVPVTKQTVVYIDDDLRVMRDEAGELFIYSR 1082
+LAA +DRG N + Y + R L++ + P P A++ G+WEL+++TV+ +FR+SPFF V+ ++S+ FFKLH+LQ SWGIS++G V G L SE D LL LT++P+IGFWKLLPTFGGC+ T + L GD +++ V+ T+ + V +P P+AG G+ P + + + G PV + Y+D+D+R++ D GELF+Y+R
Sbjct: 1 RLAAALDRGQAYNPTSGDHYAERMETARSLIEEIISEAP-PPPTSLAEIDGEWELVFSTVKHGIFRSSPFFLAVQEALGGRDQSDLFFKLHELQVMSWGISKVGR------------------------------------VAQYINSTEGKLYSEFDTSLLSLTTIPIIGFWKLLPTFGGCVVTASDVGLNGDR---LDMEVQWTEAREVPGLP--PLAGAIL-GQRVPVNSIWQALPWNEGRRPVCSVALRYLDEDMRIVADNDGELFVYTR 231
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Match: Q31AK5_PROM9 (Gram-negative pili assembly chaperone-like protein n=38 Tax=Prochlorococcus TaxID=1218 RepID=Q31AK5_PROM9) HSP 1 Score: 146 bits (369), Expect = 2.100e-36 Identity = 95/281 (33.81%), Postives = 145/281 (51.60%), Query Frame = 3
Query: 258 LKSKILQLAAVMDRGGMANKGVSNAYLGSRDDMRQLVDNLAQLEPVEKPILSAQLSGKWELLYTTVELFRASPFFQMVEAGYNDPEKSNQFFKLHQLQTGSWGISRIGXXXXXXXXXXXXXXSSGPEGSVKTVDIKGGGGEETTIVIAQERGVNGSLESEVDLILLPLTSLPVIGFWKLLPTFGGCISTRAHCSLKGDNNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTAQVTKQVLGSVPVTKQT------VVYIDDDLRVMRDEAGELFIYSR 1082
+KS I ++AAV DRG NK +S Y ++M +L+D+L L I LSG+WEL+++ VELFR+SPFF +E ND KSN FFKLHQLQ GS+GIS IG + +D N S D + LT++P++G++KLLPTFGG + T A + +N+ +++ ++ TK+ V+ + +P R +P K V +P K++ +VY+D+++R+M+D G +FIY R
Sbjct: 7 IKSNIYKIAAVTDRGQRLNKLISPMYEEKNNEMVELIDDLKNLS---FEISEKSLSGEWELIFSNVELFRSSPFFLAIENALNDEFKSNLFFKLHQLQVGSFGISTIGRI-------------------AQKIDFD-----------------NKEFISTFDTTIFGLTTIPILGWFKLLPTFGGRVITLASDLVLKNNS--LDMNLQKTKVSKVDGLNKIPFFSELLMDRWYPV----KDVWNKLPWNKESPNCHVSIVYLDEEMRIMQDMYGSIFIYIR 242 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1065.16.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1065.16.2 >prot_A-nodosum_M_contig1065.16.2 ID=prot_A-nodosum_M_contig1065.16.2|Name=mRNA_A-nodosum_M_contig1065.16.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=350bp MVPTARFSVYRVVVGIVLTCLNPASAFLTSASAGGRLTRYQASSNVGLKSback to top mRNA from alignment at A-nodosum_M_contig1065:85915..90719- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1065.16.2 ID=mRNA_A-nodosum_M_contig1065.16.2|Name=mRNA_A-nodosum_M_contig1065.16.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4805bp|location=Sequence derived from alignment at A-nodosum_M_contig1065:85915..90719- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1065:85915..90719- >mRNA_A-nodosum_M_contig1065.16.2 ID=mRNA_A-nodosum_M_contig1065.16.2|Name=mRNA_A-nodosum_M_contig1065.16.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1050bp|location=Sequence derived from alignment at A-nodosum_M_contig1065:85915..90719- (Ascophyllum nodosum dioecious)back to top |