mRNA_A-nodosum_M_contig1065.13.3 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1065.13.3 vs. uniprot
Match: D8LRM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM2_ECTSI) HSP 1 Score: 658 bits (1697), Expect = 6.060e-216 Identity = 436/804 (54.23%), Postives = 571/804 (71.02%), Query Frame = 1
Query: 4 DVQEALASLASTLSAASKPD-VIPTVMHRFHERVEACAGVVKATEEARVEKEKRTLMGKACSERESALCEEVRRLKNALNTAEEIRLSIQQKAEVGSNGAQAEIARERERARAAEKDSEEWHREAEARASRLESMKTEVGALHEAMAGLHGEMGAVQRELDVAKTSQDKLTRDLAQAEGHAHKKQEALSAMLIRVKDTEKRLRKESNDKSRLSEELAKV---SRQNEKEISALTAEVDRLKKSGDVNRVSCDKLNATNRDLNALLQRLSAELEQLQEAAKADAKRVKAAEGQMHKQEERMRRLGETFTATESRLVDVGRETDLVKDALSKVTIERQNHLAEIERQRGDLELLEREKRDLVLDVQERLKALKVTSTESLRYKKLATEAERTSEKQISAKMASDDRAKKALDELNEARRATAAKDERIEALRLELSTLRRTLEQTSDTAKSRDRESAQRLVQLSQANAKLSSEGTSVRARLAEVEDSAESTIHKLEDAKKALVKSEEEVRRTSESIQRLEEELEVADARWKAAQGQLAAAERRERRITDEARQHLRDALEAKNKELDTAVREAEANNQRRSMEAEASQRAVTRDHDRTLVAVREEAKKKLAEEXXKRAHEVSEARRKTRALFGAFQAIQGELRNSEAKGISLERKMSQLSARVNRSGSSSVASSERSSRGESETRGGGIGEI--------GGRSTDVVEAEMASLRRQLNAANQAREASEKGAAEARSRAEDEAKERSALEGSLCHKEGEMLAALERLEALKQHLQETKENSRDTQEDLKSLVRQRESEMEQLTRR 2379
DV+EALA LAS LS+ S D +I TV HRF ER EA A + + TEEAR EKE+R + KA ++RESAL EV RL+ A+ AE Q++ E + A EI+R RE++ +AEKD+ W + A A RLESM EV ALHEAMAGLHGEMGAVQRELD KTSQDKL DL++AEG K QEA + + + KD EKRLRKE+ ++ R+S EL K+ S++ E + LTAE+ RLK+S V+R DKLNATNR+LNALLQ LS +LE+ + A ++ KR +A ++ +E ++R+ E ATE+RL GR+ +L+K+ALSK + E AE +RQRG+L+LLEREK DLVLDVQER++ K + ++ RY++ +AE ++ SA +A++ KK LDEL EARR T +DERIEALR EL+TLRRTLEQT++ AK+RDRESAQRLVQLSQANAKLSSE TS RAR+ + E++ E ++A KA K E++ RR ++S+QRLEEELE+A+ARWKAAQGQL AA RRE+ +EAR+ +R+ALE+K+KE TA+RE E + RR MEAEAS RAV R+HDR LVA+REEAKKKL EE +R EVS+AR+K++A+ A Q +QGEL SEAKG LER++SQLSAR++R+GSSSVA + + S G R ++V EAEM SLRRQ+ AA +A+E +++ A EAR RA++E K+RS+LE SLC KE +MLAALERL LK +E +E++R+ +EDL+SLVRQRESE+E LTRR
Sbjct: 38 DVREALARLASALSSVSDNDTIIRTVKHRFDERKEARADLWRVTEEARAEKERRDCLNKAQADRESALQNEVERLERAVKIAENSCTDTQREGERAAASADKEISRLREKSSSAEKDAATWQQRANAGELRLESMTAEVSALHEAMAGLHGEMGAVQRELDGTKTSQDKLAADLSRAEGRYRKSQEACLSTIAKAKDAEKRLRKETEERERVSAELEKLVQMSKEEETKNVTLTAEIKRLKESEGVHRSGSDKLNATNRELNALLQSLSTDLEEAKAAGESSGKRAEALAHEVGVKEGDVQRVREALAATEARLAASGRDKELLKEALSKSSAEAHAKTAEFDRQRGELDLLEREKHDLVLDVQERVRVHKEATADAERYRERLEQAENRLKEGESATLAAELSRKKTLDELGEARRGTVMQDERIEALRSELTTLRRTLEQTTEAAKARDRESAQRLVQLSQANAKLSSESTSARARVIDAEEAVEKAGQDAQEAAKAQAKLEDDGRRAADSVQRLEEELEIANARWKAAQGQLVAANRREKEFAEEARRRMREALESKDKEKVTALREMETHADRRFMEAEASHRAVERNHDRALVAIREEAKKKLLEEEARRVREVSDARKKSKAVVEALQTLQGELTQSEAKGSGLERQVSQLSARMSRAGSSSVAPAGGNGGDGSSAXXXXXXXXXXXXXXSSGARGSEVTEAEMTSLRRQMKAATEAKETAQRSALEARLRADEETKKRSSLEESLCRKESDMLAALERLNQLKIRQKEVEEHAREGEEDLRSLVRQRESEIESLTRR 841
BLAST of mRNA_A-nodosum_M_contig1065.13.3 vs. uniprot
Match: A0A836CBP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBP5_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.760e-14 Identity = 194/699 (27.75%), Postives = 297/699 (42.49%), Query Frame = 1
Query: 415 VGALHEAMAGLHGEMGAVQRELDVAKTSQDKLTRDLAQAEGHAHKKQEALSAMLIRVK--DTEKRLRKESNDKSRLSEELAKVSRQNEKEISALTAEVDR-----------LKKSGDVNRVSCDKLNATN------------RDLNALLQRLSAELEQLQEAAKA----DAKRVKAAEGQMH------KQEERMRRLGETFTATESRLVDVGRETDLVKDALSKVTIERQNHLAEIERQRGDLELLEREKRDLVLDVQERLKALKVTSTESLRYKKLATEAERTSEKQISAKMASDDRAKKALDELNEARRATA---AKDERIEALR----LELST---------LRRTLEQTSDTAKSRD-------------------------------RESAQRLVQLSQANAKLSSEGTSVRARLAEVEDSAESTIHKLEDAKKALVKSEEEVRRTSESIQRLEEELEVADARWKAAQGQLAAAERRERRITDEARQHLRDALEAKNKELDTAVREAEANNQRRSMEAEASQRAVTRDHDRTLVAVREEAKKKLAEEXXKRAHEVSEARRKTRALFGAFQAIQGELRNSEAKGISLERKMSQLSARVNRSGSSSVASSERSSRGESETRGGGIGEIGGRSTDVVEAEMASLRRQLNAANQAREASEKGAAEARS---RAEDEAKERSALEGSLCHKEGEMLAAL 2256
V LH AMA LH E+G RE A ++DKL RDLA+AE A K AL +++ D + RL E+ +R + E + S++ E +A A+ +R L + NR+ K T+ R+L AL Q+LS E +A DA+ + +A Q+ K+E+ +RR E R V A Q +E++ R + LE EK D+VL+ Q + A + + ++L E+E+ RA A +EL AR A A+D + LR LST L R ++ + +++D RE+AQRLV+LSQ NAKLSSE +S+R ++E+ E+ L+ A ++ +Q LE++ E+A AR +A QL AA AR+ R ALE++++++ A RE SQ AV R +L E +R EV EA+R+T+A+ A + +QG+L E + +L ++ Q+ A GS + + G S G G EAE ASL+R L+AA +EK A++R+ R++D +E +EG+L KE E+ AL
Sbjct: 301 VSELHAAMAALHAELGVTSREGQAAVEARDKLKRDLARAEARADKAAGALEVAEAKLREGDHQARLAAEALTVARTAAE--EQSQRFSAERAAFLAQAERSDGQLHDFKAALSDADAANRLFLKKRFLTSTMCASCVVRGGIRELKALAQKLSQEAADAARDKEARGGEDARALASAHEQLQSIDRQLKEEQGLRRAAEA-----ERXXXXXXXXXXVSTA--------QQQRSELDGLRQAVSRLEAEKHDIVLEAQRQQAAAAAADSAACDEQRLRGESEQ--------------RAHAAAEELALAREQLAGLQARDGMLWVLRNFNYTYLSTIMIKFFMNRLPRRAQKANQGVRAKDSSTNYWAGLLSTDVLSNAALLQAXXXXXXXXREAAQRLVELSQTNAKLSSELSSLRKHADQLEEEKEAFDQTLQAA--------------AQRVQTLEDDAELAGARQQALNAQLEAAR---------ARETKRQALESRHQQVLLAARE--------------SQSAVQR---------------QLGVEVERRQREVGEAQRRTKAVGSALEVVQGQLAEEERRSSALRDELQQVKALSAAPGSLEDQAGGLFTPGGSSRHGQGSXXXX---XXAAEAERASLQRMLDAATALSADTEKALADSRAETLRSQDRLRE---VEGTLSEKERELTGAL 912 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1065.13.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1065.13.3 >prot_A-nodosum_M_contig1065.13.3 ID=prot_A-nodosum_M_contig1065.13.3|Name=mRNA_A-nodosum_M_contig1065.13.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1278bp MHRFHERVEACAGVVKATEEARVEKEKRTLMGKACSERESALCEEVRRLKback to top mRNA from alignment at A-nodosum_M_contig1065:49597..61994- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1065.13.3 ID=mRNA_A-nodosum_M_contig1065.13.3|Name=mRNA_A-nodosum_M_contig1065.13.3|organism=Ascophyllum nodosum dioecious|type=mRNA|length=12398bp|location=Sequence derived from alignment at A-nodosum_M_contig1065:49597..61994- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1065:49597..61994- >mRNA_A-nodosum_M_contig1065.13.3 ID=mRNA_A-nodosum_M_contig1065.13.3|Name=mRNA_A-nodosum_M_contig1065.13.3|organism=Ascophyllum nodosum dioecious|type=CDS|length=3834bp|location=Sequence derived from alignment at A-nodosum_M_contig1065:49597..61994- (Ascophyllum nodosum dioecious)back to top |