mRNA_A-nodosum_M_contig1063.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1063.2.1
Unique NamemRNA_A-nodosum_M_contig1063.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1063.2.1 vs. uniprot
Match: A0A8J5Y646_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y646_9ROSI)

HSP 1 Score: 76.6 bits (187), Expect = 6.790e-14
Identity = 41/100 (41.00%), Postives = 51/100 (51.00%), Query Frame = 1 
Query:   58 CETCFQVKAKRHAVPKKTNERASVKGQRFFVDVGGPMKHSSLGGNNYVVIFVDDYTRFKVVKFVKKKSDTTAAILSMVADCITPQKLSIKCIRTDNSGEF 357
            CE C   K  R   P  T  RAS K +    DV GPM+  SL GN Y ++F+DDYTR+  V F+K KS      +   A   T     IK IR+DN  E+
Sbjct:  398 CEVCQMGKQARLLFPANTTWRASSKLELVHTDVCGPMRTESLSGNRYFILFIDDYTRYCWVYFLKHKSKVVQVFMKFKAAMETETGCKIKTIRSDNGAEY 497
[Close]
BLAST of mRNA_A-nodosum_M_contig1063.2.1 vs. uniprot
Match: A0A7D9HXK4_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HXK4_PARCT)

HSP 1 Score: 76.6 bits (187), Expect = 7.000e-14
Identity = 41/114 (35.96%), Postives = 57/114 (50.00%), Query Frame = 1 
Query:   16 AAMMGIETTGQWGACETCFQVKAKRHAVPKKTNERASVKGQRFFVDVGGPMKHSSLGGNNYVVIFVDDYTRFKVVKFVKKKSDTTAAILSMVADCITPQKLSIKCIRTDNSGEF 357
            + M G+  T +   CE C + K  R   PK  + RAS   +  + DV GPM   SLGG+ Y V F+DDY+R+  V F+K KS+                   IK +R+DN GE+
Sbjct:  355 SGMDGVSNTNENQFCEACIKGKYHRCPYPKTADYRASEPFEHVYSDVCGPMSVPSLGGSRYYVSFIDDYSRYTFVYFMKNKSEVLEKFKEFHTFATNITGKPIKVLRSDNGGEY 468
[Close]
BLAST of mRNA_A-nodosum_M_contig1063.2.1 vs. uniprot
Match: A0A8J5ZMU9_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZMU9_9ROSI)

HSP 1 Score: 76.6 bits (187), Expect = 7.240e-14
Identity = 40/100 (40.00%), Postives = 52/100 (52.00%), Query Frame = 1 
Query:   58 CETCFQVKAKRHAVPKKTNERASVKGQRFFVDVGGPMKHSSLGGNNYVVIFVDDYTRFKVVKFVKKKSDTTAAILSMVADCITPQKLSIKCIRTDNSGEF 357
            CE C   K  R   P  T  RAS K +    DV GPM+  SL GN Y ++F+DDYTR+  V F+K KS+     +   A   T     +K IR+DN  E+
Sbjct:  494 CEVCQMGKQARLPFPSNTTWRASSKLELVHNDVCGPMRTESLSGNRYFILFIDDYTRYCWVYFLKHKSEVAQVFMKFKAAAETETGCKLKTIRSDNGAEY 593
[Close]
BLAST of mRNA_A-nodosum_M_contig1063.2.1 vs. uniprot
Match: A0A8J5ZMG2_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZMG2_9ROSI)

HSP 1 Score: 76.3 bits (186), Expect = 9.500e-14
Identity = 41/100 (41.00%), Postives = 52/100 (52.00%), Query Frame = 1 
Query:   58 CETCFQVKAKRHAVPKKTNERASVKGQRFFVDVGGPMKHSSLGGNNYVVIFVDDYTRFKVVKFVKKKSDTTAAILSMVADCITPQKLSIKCIRTDNSGEF 357
            CE C   K  R   P  T  RAS K +    DV GPM+  SL GN Y ++F+DDYTR+  V F+K KS+     +   A   T     IK IR+DN  E+
Sbjct:  454 CEVCQMGKQARLPFPTNTTWRASSKLELVHSDVCGPMRTESLSGNKYFILFIDDYTRYCWVYFLKHKSEVAQVFIKFKAAVETETGCKIKTIRSDNGTEY 553
[Close]
BLAST of mRNA_A-nodosum_M_contig1063.2.1 vs. uniprot
Match: A0A8J6A195_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6A195_9ROSI)

HSP 1 Score: 76.3 bits (186), Expect = 9.610e-14
Identity = 40/100 (40.00%), Postives = 52/100 (52.00%), Query Frame = 1 
Query:   58 CETCFQVKAKRHAVPKKTNERASVKGQRFFVDVGGPMKHSSLGGNNYVVIFVDDYTRFKVVKFVKKKSDTTAAILSMVADCITPQKLSIKCIRTDNSGEF 357
            CE C   K  R   P  T  RAS K +    DV GPM+  SL GN Y ++F+DDYTR+  + F+K KS+     +   A   T     IK IR+DN  E+
Sbjct:  400 CEVCQMGKQARLPFPVNTTWRASSKLELVHTDVCGPMRTESLSGNRYFILFIDDYTRYCWIYFLKHKSEVAQVFIKFKAAVKTETGCKIKTIRSDNGTEY 499
[Close]
BLAST of mRNA_A-nodosum_M_contig1063.2.1 vs. uniprot
Match: A0A8J6CGJ9_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CGJ9_9ROSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.740e-13
Identity = 40/100 (40.00%), Postives = 52/100 (52.00%), Query Frame = 1 
Query:   58 CETCFQVKAKRHAVPKKTNERASVKGQRFFVDVGGPMKHSSLGGNNYVVIFVDDYTRFKVVKFVKKKSDTTAAILSMVADCITPQKLSIKCIRTDNSGEF 357
            CE C   K  R   P  T+ R S K +    DV GPMK  SL G+ Y ++F+DDYTRF  + F+K KS+     +   A       L +K IRTDN  E+
Sbjct:   60 CEVCQIGKQARLPFPANTSWRISTKLELVHSDVCGPMKTESLNGSKYFILFIDDYTRFSWIYFLKHKSEVAQVFVKFKAATEIETGLKLKTIRTDNGTEY 159
[Close]
BLAST of mRNA_A-nodosum_M_contig1063.2.1 vs. uniprot
Match: A0A7D9J652_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J652_PARCT)

HSP 1 Score: 74.3 bits (181), Expect = 2.100e-13
Identity = 41/114 (35.96%), Postives = 56/114 (49.12%), Query Frame = 1 
Query:   16 AAMMGIETTGQWGACETCFQVKAKRHAVPKKTNERASVKGQRFFVDVGGPMKHSSLGGNNYVVIFVDDYTRFKVVKFVKKKSDTTAAILSMVADCITPQKLSIKCIRTDNSGEF 357
            + M G+  T +   CE C + K  R   PK  + RAS   +    DV GPM   SLGG+ Y V F+DDY+R+  V F+K KS+                   IK +R+DN GE+
Sbjct:   79 SGMDGVSNTNENQFCEACIKGKHHRCPYPKTADYRASEPFELVHSDVCGPMSVPSLGGSRYYVSFIDDYSRYTFVYFMKNKSEVLEKFKEFHTYATNITGKPIKVLRSDNGGEY 192
[Close]
BLAST of mRNA_A-nodosum_M_contig1063.2.1 vs. uniprot
Match: A0A1Y1K2V0_PHOPY (Uncharacterized protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1K2V0_PHOPY)

HSP 1 Score: 75.1 bits (183), Expect = 2.400e-13
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 1 
Query:   28 GIETTGQWGACETCFQVKAKRHA-VPKKTNERASVKGQRFFVDVGGPMKHSSLGGNNYVVIFVDDYTRFKVVKFVKKKSDTTAAILSMVADCITPQKLSIKCIRTDNSGEF 357
            GIE T Q   CE C  VK K+H  V +   +RA  +G+   VD+ GPM+ +S GG+ Y + F  DY++F+++KF+K+KS+TT  I  ++          +K +R D  GEF
Sbjct:  458 GIEYTKQDFFCEAC--VKGKQHRKVFQVRQQRAQREGEVMNVDLCGPMEITSYGGSRYFICFTCDYSKFRLIKFLKEKSETTKGIAEVLNFVKNQCGRPLKMLRCDGGGEF 566
[Close]
BLAST of mRNA_A-nodosum_M_contig1063.2.1 vs. uniprot
Match: A0A2N9IUL9_FAGSY (Uncharacterized protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IUL9_FAGSY)

HSP 1 Score: 75.1 bits (183), Expect = 2.460e-13
Identity = 43/118 (36.44%), Postives = 61/118 (51.69%), Query Frame = 1 
Query:    4 TRKTAAMMGIETTGQWGACETCFQVKAKRHAVPKKTNERASVKGQRFFVDVGGPMKHSSLGGNNYVVIFVDDYTRFKVVKFVKKKSDTTAAILSMVADCITPQKLSIKCIRTDNSGEF 357
            T+    +  IE   Q   CE C   K  R + PK+ + RA+   Q    DV GP+K SSLG NNY ++F+DD++R   + F+K+KS+   A     A         IK +R+D  GEF
Sbjct:  494 TKMVRGLPSIEHPNQ--LCEGCLFGKQSRKSFPKEASTRANKPLQLVHADVCGPIKPSSLGKNNYFLLFIDDFSRKTWIYFLKQKSEVFGAFKKFKAFVEKQSDQEIKALRSDRGGEF 609
[Close]
BLAST of mRNA_A-nodosum_M_contig1063.2.1 vs. uniprot
Match: A0A2N9HR09_FAGSY (Integrase catalytic domain-containing protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HR09_FAGSY)

HSP 1 Score: 75.1 bits (183), Expect = 2.470e-13
Identity = 43/118 (36.44%), Postives = 61/118 (51.69%), Query Frame = 1 
Query:    4 TRKTAAMMGIETTGQWGACETCFQVKAKRHAVPKKTNERASVKGQRFFVDVGGPMKHSSLGGNNYVVIFVDDYTRFKVVKFVKKKSDTTAAILSMVADCITPQKLSIKCIRTDNSGEF 357
            T+    +  IE   Q   CE C   K  R + PK+ + RA+   Q    DV GP+K SSLG NNY ++F+DD++R   + F+K+KS+   A     A         IK +R+D  GEF
Sbjct:  472 TKMVRGLPSIEHPNQ--LCEGCLFGKQSRKSFPKEASTRANKPLQLVHADVCGPIKPSSLGKNNYFLLFIDDFSRKTWIYFLKQKSEVFGAFKKFKAFVEKQSDQEIKALRSDRGGEF 587
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1063.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J5Y646_9ROSI6.790e-1441.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A7D9HXK4_PARCT7.000e-1435.96Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A8J5ZMU9_9ROSI7.240e-1440.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5ZMG2_9ROSI9.500e-1441.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J6A195_9ROSI9.610e-1440.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J6CGJ9_9ROSI1.740e-1340.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A7D9J652_PARCT2.100e-1335.96Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A1Y1K2V0_PHOPY2.400e-1338.74Uncharacterized protein n=1 Tax=Photinus pyralis T... [more]
A0A2N9IUL9_FAGSY2.460e-1336.44Uncharacterized protein n=6 Tax=Fagus sylvatica Ta... [more]
A0A2N9HR09_FAGSY2.470e-1336.44Integrase catalytic domain-containing protein n=4 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1063contigA-nodosum_M_contig1063:143344..143700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog281687.CJA35776
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size357
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.08e-14
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria
DescriptionEncoded by
Cds size336
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866449.2324007-UTR-A-nodosum_M_contig1063:143343..1433641680866449.2324007-UTR-A-nodosum_M_contig1063:143343..143364Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1063 143344..143364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866449.2439122-CDS-A-nodosum_M_contig1063:143364..1437001680866449.2439122-CDS-A-nodosum_M_contig1063:143364..143700Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1063 143365..143700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1063.2.1prot_A-nodosum_M_contig1063.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1063 143365..143700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1063.2.1

>prot_A-nodosum_M_contig1063.2.1 ID=prot_A-nodosum_M_contig1063.2.1|Name=mRNA_A-nodosum_M_contig1063.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=112bp
MMGIETTGQWGACETCFQVKAKRHAVPKKTNERASVKGQRFFVDVGGPMK
HSSLGGNNYVVIFVDDYTRFKVVKFVKKKSDTTAAILSMVADCITPQKLS
IKCIRTDNSGEF
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mRNA from alignment at A-nodosum_M_contig1063:143344..143700+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1063.2.1 ID=mRNA_A-nodosum_M_contig1063.2.1|Name=mRNA_A-nodosum_M_contig1063.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig1063:143344..143700+ (Ascophyllum nodosum dioecious)
ATCACCAGAAAGACGGCTGCTATGATGGGGATCGAGACGACGGGCCAGTG
GGGGGCGTGCGAGACGTGCTTCCAGGTCAAAGCAAAGCGACATGCCGTGC
CCAAGAAGACAAACGAACGGGCGAGCGTGAAAGGACAGCGATTTTTCGTT
GACGTGGGCGGGCCGATGAAACACTCGAGTCTAGGCGGGAACAACTACGT
CGTCATTTTTGTGGACGATTACACCCGCTTTAAGGTGGTGAAGTTCGTGA
AGAAGAAAAGTGACACAACGGCTGCTATCTTGTCTATGGTTGCGGACTGT
ATCACACCGCAGAAGCTGTCGATCAAGTGCATACGGACGGACAATAGTGG
CGAGTTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1063:143344..143700+

>mRNA_A-nodosum_M_contig1063.2.1 ID=mRNA_A-nodosum_M_contig1063.2.1|Name=mRNA_A-nodosum_M_contig1063.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at A-nodosum_M_contig1063:143344..143700+ (Ascophyllum nodosum dioecious)
ATGATGGGGATCGAGACGACGGGCCAGTGGGGGGCGTGCGAGACGTGCTT
CCAGGTCAAAGCAAAGCGACATGCCGTGCCCAAGAAGACAAACGAACGGG
CGAGCGTGAAAGGACAGCGATTTTTCGTTGACGTGGGCGGGCCGATGAAA
CACTCGAGTCTAGGCGGGAACAACTACGTCGTCATTTTTGTGGACGATTA
CACCCGCTTTAAGGTGGTGAAGTTCGTGAAGAAGAAAAGTGACACAACGG
CTGCTATCTTGTCTATGGTTGCGGACTGTATCACACCGCAGAAGCTGTCG
ATCAAGTGCATACGGACGGACAATAGTGGCGAGTTT
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