mRNA_A-nodosum_M_contig1055.35.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1055.35.1 vs. uniprot
Match: D7FLC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC6_ECTSI) HSP 1 Score: 213 bits (542), Expect = 2.860e-51 Identity = 198/555 (35.68%), Postives = 259/555 (46.67%), Query Frame = 1
Query: 1696 FSFSPTTSPTAAPTSSAGESLRGMTLSIQSVFEGRRRALEVDPSAGKNEIDARRALSVVYQEDAEEYDMAMVHVCAAAVGVEEERIISVFTDFGAEGPMADAARRVLQISTRSSTSSSGTSETAYSQAIIFPSQLTPVTTCEVDLTGGDDVDTRSMTAAAMVDTLFSPEKFVLLLDENRFGPVNAAVSS-IAFWQKECPDDTCPASDGSYASVFPLNEAESQSTVLKTPKDEEIHLLGFIGLGLALVLLACCSWLVFCLCCAGSRSRSPRPKKPKQTIENRYSVQNSWGSDPSPSSEEDGHCASGSVPSETRVIPPPISTERSPTEDV-VEPLSPGEAHWRRMFGLRPS---SHRSAPISPMRTHSNGSGSVASGSKGHSVGSNPFFANDHSDHSGQFKAEKKEKRILIRADGVRSDGISGSGSSKGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHSGGSSSDGGLVAQSSQPSTSTKDTRDEGVSWKVSRDLNDSEKRKNDPVIRRYAGGADSGVRTPVSSPRKELNRLREALNKPSRGSGQSFNSTSPT 3345
F+ SP+ +P++ S ES RG+TL IQS+FE RRR + + RRALSVVY+EDAE YD MV VCA VGV+ ER+ISV+T FG +G DAARR L TSSS + E I +QLTPVTTCEVDL+G + DTRSM AA MVD L PE FVL +DEN+FGPVN V+S W+K P AES+ +K+P + + G G L +L+ + + + SP P + S G P P SG R PP +ST DV VEP SPGEA WR FGL P ++RSAPISP R+ ++ GS S G PF+ + + DH ++ ADG + GL + S + + V W VS +++ S + NDPV+R A + + ++SPRKELNRL+EALN+PSR Q+ +STSPT
Sbjct: 692 FTASPSAAPSSXXXSGGNESSRGITLEIQSIFEARRRRRALSSEVSHDGSSERRALSVVYEEDAEAYDETMVDVCAYMVGVDRERVISVWTSFGPDGAAEDAARRGLM------TSSSSSDEA------IMATQLTPVTTCEVDLSG--EGDTRSMAAATMVDRLMQPENFVLAMDENQFGPVNVVVTSGPTKWRKSKP-------------------AESERYSVKSPPNTKD------GGGAGLAVLSPQRYE------RSATATSPIPDGSSPSCL-------SPGRSPVPPQAXXXPKHSG----RKRTPPPRLSTSPGRGGDVPVEPPSPGEADWRHKFGLGPLRDYTYRSAPISPRRSP------LSVGSASQSAGE-PFYTS-YQDH------------VVAAADGSMGGKV-------------------------------------------------GLTPLADDASAAMESQ----VHWHVSDEVDASVQHNNDPVVRSSLAKAGTVIANAITSPRKELNRLKEALNRPSRL--QACHSTSPT 1115
BLAST of mRNA_A-nodosum_M_contig1055.35.1 vs. uniprot
Match: A0A6H5JEE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE7_9PHAE) HSP 1 Score: 182 bits (463), Expect = 3.280e-42 Identity = 400/1510 (26.49%), Postives = 558/1510 (36.95%), Query Frame = 1
Query: 2161 MTAAAMVDTLFSPEKFVLLLDENRFGPVNAAVSSIAFWQKECPDDTCPASDGSYASVFPLNEA-ESQSTVL--KTPKDEEIHLLGFIGLGLALVLLACCSWLVFCLCCAGSRSRSPRPKKPKQTIENRYSVQNSWGSDPSPSSEEDGHCAS---------------------GSVPS---------------------ETRVIPPPISTERSPTEDV-VEPLSPGEAHWRRMFGLRP---SSHRSAPISPMRTHSNGSGSVASGSKGHSVGSNPFFANDHSDHSGQFKAEKKEKRILIRADGVRSDGISGSGSSKGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHSGGSSSDGGLVAQSSQPSTSTKDTRDEGVSWKVSRDLNDSEKRKNDPVIRRYAGGADSGVRTPVSSPRKELNRLREALNKPSRGSGQSFNSTSPTAXXXXXXXXXXXXXXXXXXNLGSGQFVRKSPSGLQGIHENDLEAAEDGDSSAVQETGEQPVGADTDSKDPNTPPSGRSDLSTSTYSSGDSGSATTFSGETRPKTLAAAAASAAAT-----VGIPCSSFRPGVVSVSCPAYTSPIESRTGSSPASRTDATTPKTSENKTAESPQALRSNDLDETHIN-------------------------RVDDEADTDSG----EAPGKASSAQSLGNTESENSACS-GEPPSMPPLPP-NTNQLVKKDAQEYTLLAATTLGSSRTPGAGGDGDGSKEDENQVEEIRSAAVLDSSESKRATPLGGVLSNFACLRGDQASPCATPRNAAVRSWCGVVTPGSRLPEDDDNDRAIDDEPSVEGKSTALASSRLP------PRPPAKD-----KDDKIGVRVGGGNVAAGGRLTLERALAISRSRSMSPELTPVAEGESEDKAXXXXXXXXXXSSRASPLSSVGGSRHASRDSNVL-----SRARQIASIPPPSAGSPGTV----------GVSLAVVSECSSD---GMRELSPRRPPYPTTSTSPQGRGYSGHTSPDPPALVTPTLSIPSPCVRPPASDSHRDGQDHHVTNAVNALQSAKSKAKGDLCGGWGADDETTTETSKAVRQSVATTEVDNTLSMMMDDVVGGVAQGVEKKADLQETTTIKEHAEDETAEESETFRRVAAGLTENFPPVMDDVGSKAEEAQVKDNSRKDAREGQLIAGDD-MPDLESPAAALPETGMSTIEWTPQPSLPAPPPPTAQSRDKKHRPED-DHPPVFSLTKSLSAFLWKKQRAISQGNINFIPRGQ-------------------------------GVPPVEDVDDEAAPVEGITVSP-SQSLTDWAESKVEDPLVHELESSPAEI-YGLVATGEGQKLNEVSDN----RQPKR-PHLELPSLAVTLCD-DMLESPGDSPFNRAAMNLQSPEP---------RLPQLPMASMXXXXKASTSTLADSVNITSPEGAVTSEN-PDFSPRYDREAIVRSMSVAEEEPDVDGESDIQVPSKLAWPSAR 6195
M AA MVD L PE FVL +DEN+FGPVN V+S EC D TCPA DGSYASV+P+ E SQS+V+ T D E+ LL F + AL LLA SW V CLCC G + +KPK RYSV+ SP + +DG A GS PS R PP +ST DV VEP SPGEA WR FGL P ++RSAPISP R+ ++ GS S G PF+ + + DH ++ ADG + GL + S + + V W VS +++ S + NDPV+R A + + ++SPRK + P+ + + S+ P + S F ++ S I+E DLEA E+G + + G S G P+ A +AS T V P + + G ++ A S SR G T T SP RS D + +V E+ T A G SS +S+ S +S S G PP MP LP N + K AA + + G K DE + + L + + P GG+LS F C+ Q SP + R+ GSRLPE DD+D ++ +E +E ++ +A R P RPP + +++G GGG+ +A ++LE+ALA+SRS +M+P+L P+AE ++ + SS S +S G R RD L +A Q+A+IPPPS+GS G GV L ++ SD G++ SP TTST R D T + IPSP RP +SD + + L E KAV + G A+G A ++ +D+ EE T+ EA + A G ++ DD +P L SP+ G + S T S+D+ ED D PP FSL +LSAFL +K + + G ++ DD A P SP S +L W E+ E L+ ++ VA E ++P + P P+L + + D PG +PF+RAAMNLQSP P +P LPM KAS + + +P+ AV + D SP YDREAI R+M+ A++E DG+SDI V S++ WPS R
Sbjct: 1 MAAATMVDRLMQPENFVLAMDENQFGPVNVVVTS-----NECRDQTCPAGDGSYASVYPIAETPSSQSSVVGEDTTPDNELKLLWFAVIAGALFLLAVLSWCVVCLCCGGPT----KWRKPKPAESERYSVK-------SPPNTKDGGGAGLAVLSPQGNQRSATATSPIPDGSSPSCMSPGRSPVXXXXXXXXXHSGRKRTPPPRLSTSPGRGRDVPVEPPSPGEADWRHKFGLGPLRDHTYRSAPISPRRSP------LSVGSASRSAGG-PFYTS-YQDH------------VVAAADGNMGGKV-------------------------------------------------GLTPLADDASAAMESQ----VHWHVSDEVDASVQHNNDPVVRSSLAKAGTVIANAITSPRKACHST-----SPTVTASSADPSSMPGFFGSEGGFSPGGNNNTFGGSSSSHNFNARASSP---IYEIDLEADENGXXXXXXXXXXXXXXX-------------XXXTGSGLANGGASEGXXAADGSPTPRKGRAGSASFGTTGEDPDVSTPLRTHKAGR-NMFAKAPGSSSRSRVGGXXXXXXHGAT-------TPTSPSNNRSTCTDRSGCGGXXXXXEGVEGGFSVLATAAAFAEVKVGVESPTGRAVRALAAAGGGSSDKSVVADRSGDSVVSDGRPPGMPSLPAANHGETSGKPYGVSRTAAAAAVAAGAVAATKAYGIREKFDEEEDTGGGADPALSPRGAPPSAPFGGMLSGFGCM-APQLSPGKGGARLSPRA-------GSRLPEIDDDDSSLAEEEEME-ENGEVAGKRAPGSCSPFSRPPLNSGTGDGRSERVGQ--GGGSASA---VSLEKALALSRSCTMTPDLKPIAE-MADSGSFTDSEAGSDVSSCLSSMSGRSGYR-VPRDPAALLAAAMEKAGQVAAIPPPSSGSHGRPLSSVQEVPMEGVPLPGLATPESDDECGLKVHSPWDSGSTTTSTVSPLRAAVSKVGVD-----TTVVPIPSPAQRPESSDESGEVTEXXXXXXKKGL-----------------------EAEKAVPGAA------------------GHARGFPSPARSRQE-------QDDEVEERRTWG----------------------EAMQQGEMTAAAMSGTVLCHDDGVPALASPSPTAAPAGAAGQXXXXXXSGA-----TGSSQDESSVGEDADKPPAFSLKSALSAFLGRKDNGGVVAPADSVDEXXXXXXXGXXXXXXXXXXXXXXXXXXXXXEEPIGTVTIDAADDSATP--DFARSPESHTLDMWPEAIGETTSKTSLDEGFVDVKISHVAMEEXXXXXXXXXXAMLLQEPAQGPAAHTPTLVIQAEEADASLKPGQTPFSRAAMNLQSPGPDSPKALQEVTMPALPMPPSPSMPKAS-------MTLQTPKTAVNPRHISDASPMYDREAIARAMAQADQEQ--DGDSDIVV-SRVEWPSER 1284
BLAST of mRNA_A-nodosum_M_contig1055.35.1 vs. uniprot
Match: A0A6H5JBT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT3_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 6.760e-15 Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 1
Query: 817 LTVEFVIDLCDFCDKYGGRDFNPIDSFHYTDAEGNEPNERMDAYKLKIPCDGLRGGAIDSVVATPAP----TPSPT 1032
+++EF +DLC +CD Y FNPID+F Y DAEGNEPN+R Y+LK+ C G+ G ++S+ ATPAP TPSPT
Sbjct: 1 MSLEFRLDLCGYCDTYNNGSFNPIDTFQYEDAEGNEPNDRKSGYQLKLDCAGIEGDPVESINATPAPVRPPTPSPT 76 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1055.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1055.35.1 >prot_A-nodosum_M_contig1055.35.1 ID=prot_A-nodosum_M_contig1055.35.1|Name=mRNA_A-nodosum_M_contig1055.35.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1963bp MKLIMLPYLAQLLFMVQLLRRGLPLGSATQTKSLLGEDPSCVTFEVVPAPback to top mRNA from alignment at A-nodosum_M_contig1055:216317..237223+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1055.35.1 ID=mRNA_A-nodosum_M_contig1055.35.1|Name=mRNA_A-nodosum_M_contig1055.35.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=20907bp|location=Sequence derived from alignment at A-nodosum_M_contig1055:216317..237223+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1055:216317..237223+ >mRNA_A-nodosum_M_contig1055.35.1 ID=mRNA_A-nodosum_M_contig1055.35.1|Name=mRNA_A-nodosum_M_contig1055.35.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=5889bp|location=Sequence derived from alignment at A-nodosum_M_contig1055:216317..237223+ (Ascophyllum nodosum dioecious)back to top |