mRNA_A-nodosum_M_contig1055.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1055.2.1
Unique NamemRNA_A-nodosum_M_contig1055.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1055.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1055contigA-nodosum_M_contig1055:27513..28500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size988
Hectar predicted targeting categoryother localisation
Exons1
Cds size504
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866437.7904491-UTR-A-nodosum_M_contig1055:27512..275401680866437.7904491-UTR-A-nodosum_M_contig1055:27512..27540Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1055 27513..27540 +
1680866437.8074875-UTR-A-nodosum_M_contig1055:28044..285001680866437.8074875-UTR-A-nodosum_M_contig1055:28044..28500Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1055 28045..28500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866437.79867-CDS-A-nodosum_M_contig1055:27540..280441680866437.79867-CDS-A-nodosum_M_contig1055:27540..28044Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1055 27541..28044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1055.2.1prot_A-nodosum_M_contig1055.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1055 27541..28044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1055.2.1

>prot_A-nodosum_M_contig1055.2.1 ID=prot_A-nodosum_M_contig1055.2.1|Name=mRNA_A-nodosum_M_contig1055.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=168bp
MSEFLTVMLKKFEKVNMQCEKLDKLLVRRGNKLDDIVKETRNTNQRRAGL
QHQSQQPRLAVKADTLEDKKTRKSLEDFAQDGRLGGISSDRAHDPMRLTS
FGDQDYIEPPALPCRDDALVNQGQKMAKPCLSLVKIRKSTPAGSLLHAGA
ASTNKAQGTNFPPQLLP*
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mRNA from alignment at A-nodosum_M_contig1055:27513..28500+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1055.2.1 ID=mRNA_A-nodosum_M_contig1055.2.1|Name=mRNA_A-nodosum_M_contig1055.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=988bp|location=Sequence derived from alignment at A-nodosum_M_contig1055:27513..28500+ (Ascophyllum nodosum dioecious)
CGAGTCTGGAGCTACTACCGCTGATCCGATGTCGGAGTTCCTCACAGTAA
TGCTCAAGAAATTTGAGAAGGTCAACATGCAATGTGAGAAGTTGGACAAA
CTACTCGTTAGACGGGGCAACAAACTCGACGACATAGTGAAAGAGACCCG
GAATACCAATCAGCGTCGTGCTGGACTGCAGCATCAGAGTCAGCAGCCAC
GTCTTGCCGTGAAGGCAGACACACTAGAAGACAAGAAGACTCGCAAAAGT
TTGGAGGACTTCGCACAAGACGGGAGATTAGGAGGTATCTCGTCTGACCG
GGCCCACGACCCGATGCGTTTGACCAGCTTCGGTGATCAAGATTACATCG
AACCTCCGGCTCTCCCCTGCAGGGATGATGCCCTGGTCAATCAAGGCCAG
AAAATGGCAAAGCCGTGTCTCTCACTCGTGAAGATACGCAAGTCAACACC
TGCCGGCAGCTTACTACATGCCGGCGCAGCTTCAACTAACAAAGCACAAG
GGACCAACTTTCCCCCACAACTTCTTCCTTAGAGCTTCCGTGAGACGAGC
GAGGAAAATAATATTTGTACGATAAGACAGACATTCGCCAAGTACAACCG
TTCCTGGCATTCAAATGTGATCGAAACGAAATCAAGGCAAAATATGGTTT
TTGACCCAGGCGGATTGTCCGGTTGTCTGTGTGATTGGCCAATCTGGGAG
GGCGACGCACGTTTATAGTGGGGGGCTTGATTTGGGAAGCGTTTGCTACC
CGGTGAAGTCATCTGTGTTTTTTTCTTGGTTTTCATGATTTTAGTATATT
CCTACAGGCAGTAGACACGTCTTGCCCTTTATTGGGAAAAGTAATGCTAT
GAACACGGTTATCTGCTACTACTGCTGTTTAGGATGTACCAAAAATTTTC
CGAGAGTGAATTGAACAGCGATCCTGAACCTCGCCCATATTATCGCTACT
GTTGGTAGCTATGGAGGTATTTGTTTGCCGCGAGTGTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1055:27513..28500+

>mRNA_A-nodosum_M_contig1055.2.1 ID=mRNA_A-nodosum_M_contig1055.2.1|Name=mRNA_A-nodosum_M_contig1055.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at A-nodosum_M_contig1055:27513..28500+ (Ascophyllum nodosum dioecious)
ATGTCGGAGTTCCTCACAGTAATGCTCAAGAAATTTGAGAAGGTCAACAT
GCAATGTGAGAAGTTGGACAAACTACTCGTTAGACGGGGCAACAAACTCG
ACGACATAGTGAAAGAGACCCGGAATACCAATCAGCGTCGTGCTGGACTG
CAGCATCAGAGTCAGCAGCCACGTCTTGCCGTGAAGGCAGACACACTAGA
AGACAAGAAGACTCGCAAAAGTTTGGAGGACTTCGCACAAGACGGGAGAT
TAGGAGGTATCTCGTCTGACCGGGCCCACGACCCGATGCGTTTGACCAGC
TTCGGTGATCAAGATTACATCGAACCTCCGGCTCTCCCCTGCAGGGATGA
TGCCCTGGTCAATCAAGGCCAGAAAATGGCAAAGCCGTGTCTCTCACTCG
TGAAGATACGCAAGTCAACACCTGCCGGCAGCTTACTACATGCCGGCGCA
GCTTCAACTAACAAAGCACAAGGGACCAACTTTCCCCCACAACTTCTTCC
TTAG
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