mRNA_A-nodosum_M_contig1055.23.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1055.23.1
Unique NamemRNA_A-nodosum_M_contig1055.23.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1055.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1055contigA-nodosum_M_contig1055:127942..131527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size200
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866437.6740818-UTR-A-nodosum_M_contig1055:127941..1279751680866437.6740818-UTR-A-nodosum_M_contig1055:127941..127975Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1055 127942..127975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866437.683341-CDS-A-nodosum_M_contig1055:127975..1279991680866437.683341-CDS-A-nodosum_M_contig1055:127975..127999Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1055 127976..127999 +
1680866437.6915991-CDS-A-nodosum_M_contig1055:131386..1315271680866437.6915991-CDS-A-nodosum_M_contig1055:131386..131527Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1055 131387..131527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1055.23.1prot_A-nodosum_M_contig1055.23.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1055 127976..131527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1055.23.1

>prot_A-nodosum_M_contig1055.23.1 ID=prot_A-nodosum_M_contig1055.23.1|Name=mRNA_A-nodosum_M_contig1055.23.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=55bp
MAGACPPKASYEYTYNIYLFIYCLVFLVNRVEQMRVLMKATIFFFLRGPT
RSGKR
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mRNA from alignment at A-nodosum_M_contig1055:127942..131527+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1055.23.1 ID=mRNA_A-nodosum_M_contig1055.23.1|Name=mRNA_A-nodosum_M_contig1055.23.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3586bp|location=Sequence derived from alignment at A-nodosum_M_contig1055:127942..131527+ (Ascophyllum nodosum dioecious)
CCACCCTTACTAAGAGGCTGCTACATGAAGTGCTATGGCGGGCGCGTGTC
CTCCTAAGGTCAGTTGTGTCAATAAGTTAATTAGGCTTTTAACTTCTGCA
CTGAACTAACTGCTTATTGCACGTAGGCGCAGGAAGCAGTTCAGTCTGAT
CTATCACGGCGGAGGCCCTTAGAGCTATCTACTTATCTACCAACGTTACA
AAGTAGTACTCCACATGATTAGGCTAGCTCTAGAGGCATGATCTCTATAT
AAACAGATAAAGGACTACTAGTGGGTTGCCTGTTGTGTCTTTGAACGTCA
TACATTCATTCAGCAGATTGGCCATCTACCGGACCGTGGCGTGACACCTC
AAGTTCTTGACGCTTCGTGTTTGTTTTTTCGTAAGAAAAAATTCCAGTTC
GTGTGACTGCGCCGAGATTCAAACTCACGTCCCAACGTCAGAAGGTTTCG
AGGTTACCAACTGAATGTACTTTCTTGCAAAGGACAGTATGTATGGTCAC
ACATATATCAAGAGTATGGATCAACCAGATAAGGTTGCCAATCCTGCTCG
TGGTCAGCTTAACTGGAAAAATTAATATCCTCCTGTCCGCGTTCGTGCCT
GAGAATTTGGTCTCGCGAGACAGGTTCGGCAGTACCGTCCCGCGTGAGCC
TGCTCATCTCCATACTCAGGTTGAACCTGGTGCTTACTTAAGGAATTCCT
CCCGAGTTCCGCGGCGGCGTCCATATATTTATTAAAACCGCCATACGCCA
TCGGGTCAGTCCCAAGTTTATCGGTCACGCAATTGCGTACTGATGGCGTT
TACTGCCGAGAGTCCGCCGGCACACGTCCAGTAAGCCTCAAGGTAGTTTC
GAACGAGTGCTGAGTCGTTCAACGATTGGGGGGGGCGGGGATACGACAAC
TCCGTCCCCGGGAGGTCACCAAAACAGTCCCTTCCGGGGATAGGACCACA
TGATTTCCTATCATACATGGTCGGCAAACTTGCCCCGAATCCAACGCATT
CCACTAAAAGGTTGGTCAATAATATCCTCGGGAGGGGCTATTTTCGTGCC
ATCTCCCAAAACGGGAATAAATTTGCGACATCCCCGCCCCCCCAAATCGT
TGAACGACTTTGCTGCCTTGGCAGAGGTCACCATGGACCAGTTTACATGC
GCCTCTCTTTTTCACACCCACTATTGTTGGTGAATTTGGTCTCGCGAGAC
GGGTTTGGCAGTCCCGTCCCGCGTTAGCCTGCTCATCTCCATACTCAGGC
TGGATATGGTGCTTACTTAGGCCCTGTCTTAACGTCCAGATAGAATATGT
TCATAGAATCTGTTTGATGACAGATTCCGTCGACAAATCCTGTTTTGGGT
CCTAACGACCATATTAGGAAATGCGGTGTCATTAGACAGTCACGCCTCCG
AGTCAATTTCAACACCTGCCCACTGGTGAGGGCGGCAGAGGGCGAACAGC
GTAACGAGGTTCGATCTCGCTCGAACCTCGACCTTGCGCCCTCCTCCGAG
CTCCGCTACCTAGGGCGCTCGGCAAGGCGACAGTCAAGCCTCCACATAAA
CCGTGACTGTCAACAGACTGCAACAAACTACTTACTGTACCAAAGTAGGG
CATACACGGAGCACCAGATATTTTTTGCGTTTCACAAGCTCCTCAAACGA
TATATGAAAGCCCAACAGCTCGTGCAGGGCATGGTACCTCGCGTGTTGTT
TGAGGGCGTCTGAATACATCAAAGTCGGTGAACTCGTCGGACTCGCAACT
GCTGTTGTCCAGACCCAGCGTTAGCGGCGCGTACTTAAAGAAGTACACAA
GAAAATCAACTACTCGGGTATGTTTCCAGTACGTAGCAGCTGTTGTCTTT
TTTTATCGGTTTCAGTTGTACTGTTTCCAGCATGTAGCAGCTGATGTCTT
TTTTTTTTGCTCTCAGTTGTACTGTCATAGTACGTAGCAGGTGTGTGTGT
GTTTTTTCTTGCCATCGAATCATTTCGCACGACAGAATTTACGTAGGATA
GAACGAAAGTATGCGTTTTCTGATGTTTTGAGTCTGGCCGACAGAATCTG
CCCACCGACAGATTCTATTAAATGCCAAAACAACTATTAATAGTTAGAAT
CTGTCCATCCGACAGATTCTGTCGTGCTCAGAACTTGCCAACTAGTAGCG
TCGAGCTTGTTTGGCCAATCACAGAGCTTTATTTTCGACAGATTTTATTG
ACAGGTTCTATCAAGACGTTAAGACAGGCCCTTTAGGCCGCGACGGCGTC
CATTTACTTATTTACGAAAATCCCTCCATCAGGCGCGACAAACGGGGCGG
CGGAGGGGATTGATTGTATTGCACATAACCTGTCATCCTGATCATGATAT
GCTACTACGAAAGGATCAATGCTTCTTATAACGAAAACCTATGATCAGAC
GCGACAGAGGAGGTTGTGTGTGTTTGTGTGCCAAGATCGAGGGCGTTCTT
ATCTCGACACGCCATCATACAGCCCACTTGGAATGCCGACCGAGTCCCCT
CTTCCACGGCAGCAGGCACATATTAATAGAGTAATCAACTTGAAAAAACA
TAAAGTGACCCAACTGGTACTCGACATGGTAGGTAGGTCTCTTGGCATGT
CTACCTTCCCGTGTGGAAACCCAATGCGTTTTTCGCGCAGCGAATGACCG
CCCTCTCACGGACGAGCGGGTGAAGATGACCAATCCGACTGTCACTGGCG
CCCGGCTCTTGAAGATCAACGCGTGGGAGCCGAGCCAGCTCTGCAAAACG
AGATCTCCAGGCAAGGAGGCGTGATCATTGCCACCTCCACCCCACACACG
TGCCTGTTTTTCTCAAATCCCTTTCCACCAGCCGGTCGCCCCGGTGGTTC
AGTTGGTAACCTCGAAACCTTCTGACGTTGGGACGTGAGTTGGATCTCGG
TGCAGTCACTCACACAAGCTGGGATTTTTCTTGCAAAAAAACGAATAAAA
TAAAATAAAATCATGCCTATCAAGTGGAGAACAATGAATTCGTTAGTACA
CAAAATTCGACTTCACGGTCGACGAGAGAAAGGGACGGCTGAATCCTTCT
CGCGTTAAAAATTAAGGCAAGCACCGCAGAAGGAAGGTGGAGACTTCTTC
TGTTCTTCTATTTCCGAGCTCAAAGCGTATTATTAGTCTAGTTGTGTATT
TGGGGCCTTTTTCCCCGAGAGTCGAGAGTATTGCTCTGTCCTGATGACGC
CTCTCATGACTATGCATATTGGTTGAACAACTAACTACTAATACTTACTC
TACTGCAGCCAGTGAAGGAGAATGAATCGGTCAAATATTAACTGTATATT
TGTTGCAATTTAAGATTTTCGGAGGATGCCGTTATCGGTGTGTGCACATG
GCTCAGCTGCCCTCCGCCCCCCGCCGATCGTTTCGTTTCGTTTTGTTTCG
TTTCTTGTATCCGACTTCACCGCGTGAGACGTTGGTCATCTTTAGGCATC
TTACGAATATACGTACAATATATATTTATTTATTTATTGTCTTGTTTTTC
TCGTAAATAGAGTGGAACAGATGAGGGTGTTGATGAAGGCCACGATCTTT
TTCTTTTTACGGGGGCCAACGAGGAGCGGCAAAAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1055:127942..131527+

>mRNA_A-nodosum_M_contig1055.23.1 ID=mRNA_A-nodosum_M_contig1055.23.1|Name=mRNA_A-nodosum_M_contig1055.23.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=165bp|location=Sequence derived from alignment at A-nodosum_M_contig1055:127942..131527+ (Ascophyllum nodosum dioecious)
ATGGCGGGCGCGTGTCCTCCTAAGGCATCTTACGAATATACGTACAATAT
ATATTTATTTATTTATTGTCTTGTTTTTCTCGTAAATAGAGTGGAACAGA
TGAGGGTGTTGATGAAGGCCACGATCTTTTTCTTTTTACGGGGGCCAACG
AGGAGCGGCAAAAGG
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