prot_A-nodosum_M_contig1053.12.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1053.12.1
Unique Nameprot_A-nodosum_M_contig1053.12.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length603
Homology
BLAST of mRNA_A-nodosum_M_contig1053.12.1 vs. uniprot
Match: D8LKI8_ECTSI (Divergent RAB-like GTPase, N-terminal myristoylation predicted by ExPASy Myristoylator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI8_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 3.370e-74
Identity = 142/302 (47.02%), Postives = 194/302 (64.24%), Query Frame = 0
Query:    1 MGQVASCYASRCCCCRCSFWRRLSHTTSRESHEHHELRLLKPSFEASRKAREREAGKYSLIKKTYHPHLRGLGDDINRLNQVVRVVLIGACDTGKTCFLRRYLEGYYAEHGHHDDYRR----TLGADFGRKLLEVADHQVRLQMWDTGGSEAYRSVISHYLHAADGVILCYDVNRKASLEDLKTTWVPFVDEHAPGTCRVLLLGNKADH--PYSEDGDRSLTRQAAKRVAEAIDAQLFETSAKLGHNIDVVGFHIIHEILHHRKYSARETVPG---GGTVIRSGRKQLSLALRDVTMDASDR 293
            MGQ ASC +    CC C   R+ +      + +  +L L   S + + K R+ +  KY    +    HLR L  DIN   QVVR+VL+G CDTGKTC LRR+L GY+ + GH D  R+    TLG DFG + +++AD +VRLQMWDTGGSE YRSV+SHYL  ADGV++C+DVN K +L  L++TW PF+D+H P TCRVLL GNKAD    +  +G   ++ + AKR AEA++AQ+FETSAKLG N+DV    ++ E+LHHR+++A +       G +  R GRK+LS++L+ V     DR
Sbjct:    1 MGQAASCCSF---CCPCPLRRKAAAVPGATTEDQSKL-LPSSSTKKAHKPRKEKCSKY----RRPPSHLRELSGDIN---QVVRLVLVGGCDTGKTCLLRRFLGGYFDDIGHQDYTRQAQAITLGVDFGCRTVDLADRRVRLQMWDTGGSETYRSVVSHYLRGADGVMMCFDVNSK-TLRSLRSTWAPFLDKHTPRTCRVLLAGNKADARGDFGVNGGE-VSHEDAKRFAEAMEAQVFETSAKLGTNVDVAVMALMQEVLHHRQFAAEDKARSSKKGSSPARRGRKRLSVSLKGVMERNGDR 289          
BLAST of mRNA_A-nodosum_M_contig1053.12.1 vs. uniprot
Match: A0A835YYU6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYU6_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.020e-29
Identity = 60/123 (48.78%), Postives = 77/123 (62.60%), Query Frame = 0
Query:   83 VRVVLIGACDTGKTCFLRRYLEGYYA-EHGHHDDYRRTLGADFGRKLLEVADHQVRLQMWDTGGSEAYRSVISHYLHAADGVILCYDVNRKASLEDLKTTWVPFVDEHAPGTCRVLLLGNKAD 204
            VR+V++G C  GKT  +RRYL GY+  +      Y  TLG DFG K + +   +VRLQ+WDT GS  Y SV+SHYLHAADGV L YD     S + ++  W+P V  +AP   R LL+GNK D
Sbjct:    5 VRLVMVGDCGVGKTAIMRRYLNGYFCGDTAKGTPYSSTLGVDFGCKTVHLEGKRVRLQVWDTSGSARYGSVVSHYLHAADGVALVYDTTCAESFQRVQDYWLPLVKSYAPEAVRFLLVGNKCD 127          
BLAST of mRNA_A-nodosum_M_contig1053.12.1 vs. uniprot
Match: Q3SD05_PARTE (Rab_A48 protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=Q3SD05_PARTE)

HSP 1 Score: 117 bits (294), Expect = 1.160e-26
Identity = 55/183 (30.05%), Postives = 104/183 (56.83%), Query Frame = 0
Query:   72 LGDDINRLNQVVRVVLIGACDTGKTCFLRRYLEGYYAEHGHHDDYRRTLGADFGRKLLEVADHQVRLQMWDTGGSEAYRSVISHYLHAADGVILCYDVNRKASLEDLKTTWVPFVDEHAPGTCRVLLLGNKADHPYSEDGDRSLTRQAAKRVAEAIDAQLFETSAKLGHNIDVVGFHIIHEIL 254
            +  + N  + +++VV++G C+ GK+C L RY E Y+        Y  T+G DF  +++++    V+LQ+WDT G E ++++ ++Y   A GV++ YDV  +++  D   +W+  +D++   + + L++GNKAD P      R ++ Q     A+  +A+  ETSAK   N+D +   I  +++
Sbjct:    1 MNKNTNAYDTLIKVVIVGNCNVGKSCILMRYSENYFTS-----QYYNTIGVDFKTRVIKIGHLNVKLQIWDTAGQERFKALTNNYYRDAHGVVIVYDVTERSTF-DAVDSWIEDIDKYGRKSVQKLIVGNKADIPNK----RKISLQEGLEKAKQFNARFLETSAKTSDNVDKLFISICEQVM 173          
BLAST of mRNA_A-nodosum_M_contig1053.12.1 vs. uniprot
Match: UPI001BB1E872 (ras-related protein Rab-15-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1E872)

HSP 1 Score: 114 bits (286), Expect = 1.800e-25
Identity = 64/179 (35.75%), Postives = 99/179 (55.31%), Query Frame = 0
Query:   80 NQVVRVVLIGACDTGKTCFLRRYLEGYYAEHGHHDDYRRTLGADFGRKLLEVADHQVRLQMWDTGGSEAYRSVISHYLHAADGVILCYDVNRKASLEDLKTTWVPFVDEHAPGTCRVLLLGNKADHPYSEDGDRSLTRQAAKRVAEAIDAQLFETSAKLGHNIDVVGFHIIHEILHHRK 258
            N   +++LIG    GKTC LRRY+EG +  +      + TLG DF  + L V   ++RLQ+WDT G E +RS+   Y   A G++L YDV  + S   L + W+  V  +AP   +V+L+GNK+D   ++D +R ++RQA +  A+    + +ETSA    N+     H+   +L   K
Sbjct:   14 NGSYKILLIGGSGVGKTCLLRRYVEGEFPLNS-----KATLGLDFKIRTLIVDKDEIRLQLWDTSGQERFRSMTQAYYRGAAGIVLVYDVTAEDSFSTL-SDWLGDVSMYAPEDVKVILIGNKSD---ADDDERIISRQAGEEFAKEHGLKYYETSAVTNENVAEAFEHLAKLLLEDEK 183          
BLAST of mRNA_A-nodosum_M_contig1053.12.1 vs. uniprot
Match: A0A6J2T9V8_DROLE (ras-related protein Rab-43 n=1 Tax=Drosophila lebanonensis TaxID=7225 RepID=A0A6J2T9V8_DROLE)

HSP 1 Score: 112 bits (279), Expect = 1.810e-24
Identity = 59/170 (34.71%), Postives = 93/170 (54.71%), Query Frame = 0
Query:   84 RVVLIGACDTGKTCFLRRYLEGYYAEHGHHDDYRRTLGADFGRKLLEVADHQVRLQMWDTGGSEAYRSVISHYLHAADGVILCYDVNRKASLEDLKTTWVPFVDEHAPGTCRVLLLGNKADHPYSEDGDRSLTRQAAKRVAEAIDAQLFETSAKLGHNIDVVGFHIIHEI 253
            +VVLIG C TGKTC + R+  G Y      D +  T+G DF  K + V   QV+LQ+WDT G E +R++   Y  +A+GVI+ YD+ ++AS  +L+  W+  V  +      ++L+GNK D     + D    R  ++ + E +   + ETSAK   N++   F +  E+
Sbjct:   22 KVVLIGDCGTGKTCIVERFKTGNYV-----DRHGNTIGVDFSMKTIAVDGKQVKLQIWDTAGQERFRTITQSYYRSANGVIIVYDITKRASFSNLQR-WIEEVRRYTASNVPIILIGNKCDLETEREVDFEEVRHVSQFIPEVLF--VMETSAKENTNVEDAFFCLAMEL 183          
BLAST of mRNA_A-nodosum_M_contig1053.12.1 vs. uniprot
Match: A0A7M7NNG3_STRPU (Uncharacterized protein n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NNG3_STRPU)

HSP 1 Score: 110 bits (276), Expect = 4.510e-24
Identity = 64/186 (34.41%), Postives = 104/186 (55.91%), Query Frame = 0
Query:   84 RVVLIGACDTGKTCFLRRYLEGYYAEHGHHDDYRRTLGADFGRKLLEVADHQVRLQMWDTGGSEAYRSVISHYLHAADGVILCYDVNRKASLEDLKTTWVPFVDEHAPGTCRVLLLGNKADHPYSEDGDRSLTRQAAKRVAEAIDAQLFETSAKLGHNIDVVGFHIIHEILHHRKYSARETVPGGG 269
            +++LIG    GKTC LRRY+EG +  +      + TLG DF  + L V   ++RLQ+WDT G E +RS+   Y   A G+++ YDV  + S   L T W+  V  +AP   +++L+GNK+D   +++ +R +++QA +  A+    + FETSA    N+     H+   +L   K + ++T  G G
Sbjct:   19 KILLIGGSGVGKTCLLRRYVEGEFPLNS-----KATLGLDFKIRTLIVDTDEIRLQLWDTSGQERFRSMTQAYYRGAAGIVIVYDVTAEDSFTTL-TDWLGDVSMYAPEGVKMVLIGNKSD---ADEDERVISQQAGEEFAKEHGLKYFETSAVTNQNVAEAFEHLAKLLL--EKENKQQTSNGIG 193          
BLAST of mRNA_A-nodosum_M_contig1053.12.1 vs. uniprot
Match: UPI0014438C58 (ras-related protein Rab-43 n=1 Tax=Megalopta genalis TaxID=115081 RepID=UPI0014438C58)

HSP 1 Score: 112 bits (279), Expect = 6.510e-24
Identity = 68/202 (33.66%), Postives = 113/202 (55.94%), Query Frame = 0
Query:   84 RVVLIGACDTGKTCFLRRYLEGYYAE-HGHHDDYRRTLGADFGRKLLEVADHQVRLQMWDTGGSEAYRSVISHYLHAADGVILCYDVNRKASLEDLKTTWVPFVDEHAPGTCRVLLLGNKADHPYSEDGDRSLTRQAAKRVAEAIDAQLFETSAKLGHNIDVVGFHIIHEILHHRKYSARETVPGGGTVIR--SGRKQLSLA 282
            ++VLIG C TGKTCF++R+  G + E HG       T+G DF  K + + D +V+LQ+WDT G E +R++   Y  +A+GVI+ YD+ ++++   L+  WV  V  +      ++L+GN+ D  +  + ++       + + E +  Q+ ETSAK   NID V F++  E+   R++  R+       V+R  SGRK  S +
Sbjct:   77 KIVLIGDCGTGKTCFVQRFRFGTFNETHG------STIGVDFSMKTVLIDDKKVKLQIWDTAGQERFRTIRQSYYRSANGVIVVYDITKRSTFLSLQH-WVEEVRRYTSSHVLLVLVGNRCDLEHLREVEKEEAEALRQYLPEVL--QVVETSAKENTNIDFVFFYLASELK--RRHENRQISTKEDEVVRLGSGRKLSSCS 267          
BLAST of mRNA_A-nodosum_M_contig1053.12.1 vs. uniprot
Match: A0A7S4Q6D0_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4Q6D0_9DINO)

HSP 1 Score: 111 bits (278), Expect = 6.520e-24
Identity = 57/162 (35.19%), Postives = 95/162 (58.64%), Query Frame = 0
Query:   82 VVRVVLIGACDTGKTCFLRRYLEGYYAEHGHHDDYRRTLGADFGRKLLEVADHQVRLQMWDTGGSEAYRSVISHYLHAADGVILCYDVNRKASLEDLKTTWVPFVDEHAPGTCRVLLLGNKADHPYSEDGDRSLTRQAAKRVAEAIDAQLFETSAKLGHNID 243
            + ++++IG C  GK+  LRR+++G Y+       Y  T+G DFG++   V   +V+LQ+WDT GSE +RS+ S Y   A GVI+ +DV+ + + + +   W+    +HAP + R +L+GNK D    E   R+++R  A  +A+ +   L E SAK   N++
Sbjct:   29 IFKILVIGDCGVGKSSLLRRFVDGEYST-----QYTATIGVDFGQRSCTVDGKKVKLQIWDTAGSERFRSITSGYYKGAHGVIVVFDVSDRKTFDHVGF-WLAEAGKHAPTSARRMLVGNKCD---IEGPGRAVSRDEALELADRLGLPLLEASAKSAENVE 181          
BLAST of mRNA_A-nodosum_M_contig1053.12.1 vs. uniprot
Match: A0A7S2KFM0_BIGNA (Hypothetical protein n=1 Tax=Bigelowiella natans TaxID=227086 RepID=A0A7S2KFM0_BIGNA)

HSP 1 Score: 110 bits (274), Expect = 8.190e-24
Identity = 68/196 (34.69%), Postives = 108/196 (55.10%), Query Frame = 0
Query:   84 RVVLIGACDTGKTCFLRRYLEGYYAEHGHHDDYRRTLGADFGRKLLEVADHQVRLQMWDTGGSEAYRSVISHYLHAADGVILCYDVNRKASLEDLKTTWVPFVDEHA-PGTCRVLLLGNKADHPYSEDGDRSLTRQAAKRVAEAIDAQLFETSAKLGHNIDVVGFHIIHEILHHRKYSARETVPGGGTVIRSGRKQ 278
            ++VLIG    GK+C L R+ +  +      D Y  T+G DF  + L++    V+LQ+WDT G E +R++ S Y   ADG+I+ YDV  + S   +   W+  VD  A   TC+ LL+GNKAD       +R +T  +A+ +A+ ++ Q  ETSAK   N+      +  E++  RK + R+T+    T + SGR++
Sbjct:   28 KLVLIGDSGVGKSCLLLRFADDSFT-----DSYISTIGVDFRFRTLKINKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSEESFNHVDE-WLNEVDRFANENTCK-LLVGNKADLVK----ERKVTADSARALAQRLNVQFLETSAKTSTNVTTAFQTMAEELIATRK-NVRKTLASDITKLSSGREE 211          
BLAST of mRNA_A-nodosum_M_contig1053.12.1 vs. uniprot
Match: B4J201_DROGR (GH15503 n=8 Tax=Drosophila TaxID=7215 RepID=B4J201_DROGR)

HSP 1 Score: 110 bits (274), Expect = 8.610e-24
Identity = 59/161 (36.65%), Postives = 91/161 (56.52%), Query Frame = 0
Query:   84 RVVLIGACDTGKTCFLRRYLEGYYAE-HGHHDDYRRTLGADFGRKLLEVADHQVRLQMWDTGGSEAYRSVISHYLHAADGVILCYDVNRKASLEDLKTTWVPFVDEHAPGTCRVLLLGNKADHPYSEDGDRSLTRQAAKRVAEAIDAQLFETSAKLGHNID 243
            ++VLIG C TGKT  L+R+  G Y E HG+      T+G DF  K +EV   QV+LQ+WDT G E +R++   Y  A +GVI+ YD+ ++A+  +L+  W+  V  +      ++L+GNK D     + D    RQ  + + E +   + ETSAK   N++
Sbjct:   23 KIVLIGDCCTGKTSILQRFKTGNYVERHGN------TIGVDFSMKTIEVEGKQVKLQIWDTAGQERFRTITQSYYRANNGVIIVYDITKRATFANLQK-WIEEVRRYTASNVLIILIGNKCDLEEEREVDFEEARQMCQYIPEILF--VMETSAKENTNVE 174          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1053.12.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKI8_ECTSI3.370e-7447.02Divergent RAB-like GTPase, N-terminal myristoylati... [more]
A0A835YYU6_9STRA1.020e-2948.78P-loop containing nucleoside triphosphate hydrolas... [more]
Q3SD05_PARTE1.160e-2630.05Rab_A48 protein n=2 Tax=Paramecium tetraurelia Tax... [more]
UPI001BB1E8721.800e-2535.75ras-related protein Rab-15-like n=1 Tax=Lytechinus... [more]
A0A6J2T9V8_DROLE1.810e-2434.71ras-related protein Rab-43 n=1 Tax=Drosophila leba... [more]
A0A7M7NNG3_STRPU4.510e-2434.41Uncharacterized protein n=2 Tax=Strongylocentrotus... [more]
UPI0014438C586.510e-2433.66ras-related protein Rab-43 n=1 Tax=Megalopta genal... [more]
A0A7S4Q6D0_9DINO6.520e-2435.19Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S2KFM0_BIGNA8.190e-2434.69Hypothetical protein n=1 Tax=Bigelowiella natans T... [more]
B4J201_DROGR8.610e-2436.65GH15503 n=8 Tax=Drosophila TaxID=7215 RepID=B4J201... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 192..205
score: 36.91
coord: 231..253
score: 30.95
coord: 83..104
score: 32.08
coord: 111..127
score: 23.17
coord: 129..151
score: 36.73
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 80..256
e-value: 4.7E-9
score: 14.8
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 83..256
e-value: 2.4E-32
score: 123.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 298..326
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 288..337
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 425..444
NoneNo IPR availablePANTHERPTHR47978FAMILY NOT NAMEDcoord: 76..257
NoneNo IPR availablePANTHERPTHR47978:SF21RAS-RELATED PROTEIN RAB-26coord: 76..257
NoneNo IPR availablePROSITEPS51420RHOcoord: 74..265
score: 9.432596
NoneNo IPR availablePROSITEPS51419RABcoord: 75..301
score: 21.148232
NoneNo IPR availableCDDcd00154Rabcoord: 83..250
e-value: 3.74744E-47
score: 160.699
IPR001806Small GTPaseSMARTSM00174rho_sub_3coord: 85..256
e-value: 1.0E-9
score: 5.5
IPR001806Small GTPasePFAMPF00071Rascoord: 84..253
e-value: 2.8E-34
score: 118.1
IPR001806Small GTPasePROSITEPS51421RAScoord: 77..288
score: 13.894838
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 77..266
e-value: 5.1E-45
score: 155.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 81..257
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 83..246
e-value: 2.3E-18
score: 64.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1053contigA-nodosum_M_contig1053:119286..125922 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1053.12.1mRNA_A-nodosum_M_contig1053.12.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1053 118556..125974 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1053.12.1 ID=prot_A-nodosum_M_contig1053.12.1|Name=mRNA_A-nodosum_M_contig1053.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=603bp
MGQVASCYASRCCCCRCSFWRRLSHTTSRESHEHHELRLLKPSFEASRKA
REREAGKYSLIKKTYHPHLRGLGDDINRLNQVVRVVLIGACDTGKTCFLR
RYLEGYYAEHGHHDDYRRTLGADFGRKLLEVADHQVRLQMWDTGGSEAYR
SVISHYLHAADGVILCYDVNRKASLEDLKTTWVPFVDEHAPGTCRVLLLG
NKADHPYSEDGDRSLTRQAAKRVAEAIDAQLFETSAKLGHNIDVVGFHII
HEILHHRKYSARETVPGGGTVIRSGRKQLSLALRDVTMDASDRYGSPPSS
CEKKSDSLPKTSSSDDTATRGRTSNRSSFDSCERDDKDDGDDSDLRWIWP
SDISQFTRDAKDYRHHYDDSGHGGTSGGGDGGGGGGDYSSCKYVLGEDGI
EIELSLKNGAKVSQRMGSEGTVPARNDLPSFSGTVDPETSSSNGGCSTLR
DQKFGCVTSEEYCLDKLAAGVSRGGVNPINKALSTTVHGCYAEHHNGVRK
SGRSALLKPIKIHSTVRKSFQKPSLSLVATVPPLKSPDVVSKKESKLGPL
IRSPPTPQSSYDCVTTADEFETSSLSDTCSPTRGKLSAASEHGPRYKQTN
GC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase
IPR005225Small_GTP-bd_dom