mRNA_A-nodosum_M_contig105.56.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig105.56.1
Unique NamemRNA_A-nodosum_M_contig105.56.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig105.56.1 vs. uniprot
Match: A0A6H5JIS8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 8.660e-22
Identity = 59/141 (41.84%), Postives = 82/141 (58.16%), Query Frame = 1 
Query:    1 MKVAIRSASLWTHYMFEAIRKAQCSPPPFLAASRASPSRSGLREELELWDGLTENSQEGPWYLAKHFSVVLTRAASDASALAWGGVLRFSSLVFQAGTDFGQQRIARDIQV--IYALHELLQVFCKEFPGRLPRAQVIADV 417
            M VAIR ASL+T  MF A+   + S     +      S + L  E+  W  +T  + EGPW LA+HF+  LT+ ASDAS+LAWGGVL  ++  F+AG  F  + ++  I +  +YAL+ +L  FC+  P  L RAQV  DV
Sbjct:  327 MTVAIRPASLYTQAMFAALAALERST--LRSVDLTKDSGADLVGEMRKWLDITATTHEGPWQLARHFTAALTKGASDASSLAWGGVLYAATDPFEAGGMFPPEWMSSHINLKELYALYHVLLQFCQRHPDCLRRAQVFVDV 465
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BLAST of mRNA_A-nodosum_M_contig105.56.1 vs. uniprot
Match: A0A6H5LH38_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LH38_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 5.350e-19
Identity = 58/139 (41.73%), Postives = 76/139 (54.68%), Query Frame = 1 
Query:    7 VAIRSASLWTHYMFEAIRKAQCSPPPFLAASRASPSRSGLREELELWDGLTENSQEGPWYLAKHFSVVLTRAASDASALAWGGVLRFSSLVFQAGTDFGQQRIARDIQV--IYALHELLQVFCKEFPGRLPRAQVIADV 417
            VAIR ASLWT  MF  + K + +    +  SR S   S L  E   W  LT  S EGPW  A+ FS  LT  +SDAS+LAWGG++R +S  F AG  F    ++  I +  +Y L  LL+  C   P  L RA+V+ +V
Sbjct:  263 VAIRPASLWTLAMFATLSKLEKAGRSTIDLSRNS--CSDLVGEFRQWLRLTSTSHEGPWQRARQFSATLTSRSSDASSLAWGGMVRMASGTFAAGGVFPANWLSAHINLKEMYGLCYLLRQICTRHPDELRRARVLIEV 399
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig105.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIS8_9PHAE8.660e-2241.84Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LH38_9PHAE5.350e-1941.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig105contigA-nodosum_M_contig105:625946..626362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size419
Hectar predicted targeting categorymitochondrion
Exons1
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866427.7541904-CDS-A-nodosum_M_contig105:625945..6263621680866427.7541904-CDS-A-nodosum_M_contig105:625945..626362Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig105 625946..626362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig105.56.1prot_A-nodosum_M_contig105.56.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig105 625946..626362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig105.56.1

>prot_A-nodosum_M_contig105.56.1 ID=prot_A-nodosum_M_contig105.56.1|Name=mRNA_A-nodosum_M_contig105.56.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=139bp
MKVAIRSASLWTHYMFEAIRKAQCSPPPFLAASRASPSRSGLREELELWD
GLTENSQEGPWYLAKHFSVVLTRAASDASALAWGGVLRFSSLVFQAGTDF
GQQRIARDIQVIYALHELLQVFCKEFPGRLPRAQVIADV
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mRNA from alignment at A-nodosum_M_contig105:625946..626362-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig105.56.1 ID=mRNA_A-nodosum_M_contig105.56.1|Name=mRNA_A-nodosum_M_contig105.56.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at A-nodosum_M_contig105:625946..626362- (Ascophyllum nodosum dioecious)
ATGAAAGTCGCTATCCGATCAGCATCCCTGTGGACGCACTACATGTTCGA
GGCGATTCGCAAGGCCCAATGCTCCCCACCACCGTTTCTGGCAGCATCGC
GTGCGAGTCCCTCGAGGAGTGGCCTCCGTGAAGAGCTCGAGTTGTGGGAC
GGATTAACCGAAAACTCCCAAGAAGGACCTTGGTACCTCGCTAAGCATTT
TTCTGTGGTACTAACGCGGGCTGCGTCAGACGCGTCCGCCCTTGCATGGG
GCGGGGTGCTTCGTTTTTCGTCACTAGTATTTCAAGCCGGGACAGATTTT
GGCCAACAACGGATTGCGCGAGACATCCAAGTTATATACGCATTGCACGA
ATTACTACAAGTATTTTGTAAAGAGTTCCCCGGTAGACTTCCGCGTGCAC
AGGTGATCGCAGATGTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig105:625946..626362-

>mRNA_A-nodosum_M_contig105.56.1 ID=mRNA_A-nodosum_M_contig105.56.1|Name=mRNA_A-nodosum_M_contig105.56.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=417bp|location=Sequence derived from alignment at A-nodosum_M_contig105:625946..626362- (Ascophyllum nodosum dioecious)
ATGAAAGTCGCTATCCGATCAGCATCCCTGTGGACGCACTACATGTTCGA
GGCGATTCGCAAGGCCCAATGCTCCCCACCACCGTTTCTGGCAGCATCGC
GTGCGAGTCCCTCGAGGAGTGGCCTCCGTGAAGAGCTCGAGTTGTGGGAC
GGATTAACCGAAAACTCCCAAGAAGGACCTTGGTACCTCGCTAAGCATTT
TTCTGTGGTACTAACGCGGGCTGCGTCAGACGCGTCCGCCCTTGCATGGG
GCGGGGTGCTTCGTTTTTCGTCACTAGTATTTCAAGCCGGGACAGATTTT
GGCCAACAACGGATTGCGCGAGACATCCAAGTTATATACGCATTGCACGA
ATTACTACAAGTATTTTGTAAAGAGTTCCCCGGTAGACTTCCGCGTGCAC
AGGTGATCGCAGATGTA
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