mRNA_A-nodosum_M_contig105.60.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig105.60.1
Unique NamemRNA_A-nodosum_M_contig105.60.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig105.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig105contigA-nodosum_M_contig105:652211..653962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size425
Hectar predicted targeting categoryother localisation
Exons2
Cds size213
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866424.8783743-UTR-A-nodosum_M_contig105:652210..6522301680866424.8783743-UTR-A-nodosum_M_contig105:652210..652230Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig105 652211..652230 -
1680866424.9117384-UTR-A-nodosum_M_contig105:653770..6539621680866424.9117384-UTR-A-nodosum_M_contig105:653770..653962Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig105 653771..653962 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866424.887725-CDS-A-nodosum_M_contig105:652230..6523921680866424.887725-CDS-A-nodosum_M_contig105:652230..652392Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig105 652231..652392 -
1680866424.896312-CDS-A-nodosum_M_contig105:653719..6537701680866424.896312-CDS-A-nodosum_M_contig105:653719..653770Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig105 653720..653770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig105.60.1prot_A-nodosum_M_contig105.60.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig105 652231..653770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig105.60.1

>prot_A-nodosum_M_contig105.60.1 ID=prot_A-nodosum_M_contig105.60.1|Name=mRNA_A-nodosum_M_contig105.60.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=71bp
MLDGNSINSEQAPLQREVMWWECLGGHRLVHAAFSGDVIYGKKAQSMGDG
VRKAGRSTFSARSINSKVAS*
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mRNA from alignment at A-nodosum_M_contig105:652211..653962-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig105.60.1 ID=mRNA_A-nodosum_M_contig105.60.1|Name=mRNA_A-nodosum_M_contig105.60.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1752bp|location=Sequence derived from alignment at A-nodosum_M_contig105:652211..653962- (Ascophyllum nodosum dioecious)
AATTTGATAAGCAGCTCAACGGAACGGGCACCCACCTCTCCGGCACGTTA
TCGGGGGGGTGGGACGACACACGAGGGGCCGAGGGAGGTAGCGATTGGAC
CTCAGAGTGGAGCAGGCACGGGGTGGGAACAGCCGGAACGAAAGCGGTCG
AGGGTGGACTCTGTAGACCACCAGGCAGGGGATTTCCGCGAGATGTTGGA
CGGGAACAGCATCAATTCAGAGCAGGCTCCGTTACAGCGTGAGGTAAGCC
TACGGGGCTATTAATAGTATGCCGACTATATCGAGAGCGACGCAGAAGCT
CAGCGTAACTGAAATTACTGCCCAACTGCATAAACAAGTTCCATGTATAC
AGTAATTCGCGCATCAGAATTTCAATGTGCCGGTTGAAGTTACGACCTTA
CGCAAGCGTCAGTAGGCAAATGTTCGCGGGTCAGAATTGTCAATGGGCCG
GCTGAAGGTACAACAAAATTTCACTGCAGTAAGTGATACTACGAAAGTAC
AGCGGTCGCGGAAGAGTTGCCACTGAAAGTTATAATCCATCGCACGCCGG
TACTGGAAAGCGGCGGCGTTGAAGGCTGAGGTGTGGGTTGAGACAGTCAC
GGAGGGTGGGCGGAGGTTTATGGCCGCGTGGAGGAAAGAAGAGCTAGACG
CGGCTAGACATCGCCAGGAGAAGAGAGAAGCAACGAGACTGGGAAACTTG
TCATCGCAGACGGGAGTGTCGAATTTTGCGAAGCCACACCCTTTGACCTA
GTCGACGAGATGCGTCGCGTGATTTTTTTTTATTTTCTCCGAACGAGCAG
TACATGTATAGGGTGTGGGGGGGGGGGTATGCTGCCAGACTTTTCCTTTT
GTTCTCTTTTCCCTGTTCAGCAGACCACGAGCGGGATTGGCCACCGTGTA
AAGTAGTTTTTTCGGGTTGGCAACCAATACGCTGAATGTGAGAAACAACA
ACAACAACAACTTTCAACATGCCCACTTCATACTTATAGTGTGTGTGGAA
AAGAGAGGCGTATTAGTTGGTCCATGGTGACCTGCCAAGGCAGCACTCGT
TCAGAACTACCTTGAGGTTTACTGGCCCTGTGCCGGCGAACTCTCGGCAG
TGAACGCCATCGGTACGCAATTGTGTGAACCGATAAACTCGGGACTGACC
CGATGGCGTCTGGCGGTTTTAAATGCATAAATGGACGCCGCCGCGGAACT
CGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGA
GCAGGCTGACGCGGGACGGGACTGCCGAACCCGTCTCGCGAGACCAAATT
CTCAGGCGCGAACGCGGACAGGGAAATATTCATTTTCCCTATTCGGCTGA
CCACGTACAGGATTGGCAACCTTACCCCGTTGATCCATACTCTTGCTATA
GCTCTATGTCATGACCATACAACTATGGAAAATTTGACCGCGTCAGCTGC
CGGTTGAAGGTACAACAGAATTTCACAGCGTCAAGTGGTACTACGAAAGT
ACAGCGGTCGCGTAAGGGTTGCCACTGAAAGTTATACTCCATCACACTAT
GGAAATTTTGACCGCATCAGGTCATGTGGTGGGAGTGTCTGGGAGGTCAC
CGCCTCGTCCATGCTGCGTTCAGCGGCGACGTGATATACGGGAAGAAAGC
TCAGTCCATGGGAGATGGTGTTCGGAAGGCAGGGCGTAGTACCTTCAGTG
CGCGAAGTATCAACAGCAAGGTTGCTAGTTGAAGATCAGGGTCAAACGAA
AC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig105:652211..653962-

>mRNA_A-nodosum_M_contig105.60.1 ID=mRNA_A-nodosum_M_contig105.60.1|Name=mRNA_A-nodosum_M_contig105.60.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=213bp|location=Sequence derived from alignment at A-nodosum_M_contig105:652211..653962- (Ascophyllum nodosum dioecious)
ATGTTGGACGGGAACAGCATCAATTCAGAGCAGGCTCCGTTACAGCGTGA
GGTCATGTGGTGGGAGTGTCTGGGAGGTCACCGCCTCGTCCATGCTGCGT
TCAGCGGCGACGTGATATACGGGAAGAAAGCTCAGTCCATGGGAGATGGT
GTTCGGAAGGCAGGGCGTAGTACCTTCAGTGCGCGAAGTATCAACAGCAA
GGTTGCTAGTTGA
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