mRNA_A-nodosum_M_contig1047.1.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1047.1.2
Unique NamemRNA_A-nodosum_M_contig1047.1.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1047.1.2 vs. uniprot
Match: D7FLU3_ECTSI (Radical SAM core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLU3_ECTSI)

HSP 1 Score: 660 bits (1704), Expect = 4.110e-230
Identity = 345/460 (75.00%), Postives = 371/460 (80.65%), Query Frame = 1
Query:   97 MVKKRILNPQPVLDEALLLKALREEGIKELHVRAAWSHALSEGKAHGSDANFDGFEHANFNMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRLQDGQMVEAVVIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPETQLALSLHAPNQELRNRIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPSQMSSTAVGSEGEAE-----------------------------GDVENVAGVAMVGGKGAGRRALIEYVMLAGVNDTEECGRQLGELLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVHSQGLLVTIRRHHGRDIDGACGQLAVKVVASESGSVTANSCRAGGGSN-GGGDIEDLVA 1386
            MVKKR+L+P PVLDEALL  ALREEGIKELH  + W +ALSEGK HGSDA FDGFE   F M+APAPTGP+LRRKFAVLTS VVETQRSEDGT+KLL+RLQDGQMVE V+I H GTHPR TLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRV+PIRNVVFMGMGEPLNNYDAVLA+IRGM+D RMFKLSPRHITLSTVGVVPRM+QLT+DAPETQLALSLHAPNQELRNRIVPSARAYRLDKLMDALDGHLRGPG+ P                                                 G VE +AGV MVGG+GAGRRALIEYVMLAGVNDTEECGR+LGELL+GRNV+VNLIPYNPTYAPGSEEF+EPTEEALQ FR IVH  GLLVTIRRHHGRDIDGACGQLAVKVV +  G+ + + C +G      GGDIEDLVA
Sbjct:    1 MVKKRVLDPIPVLDEALLSAALREEGIKELHAASVWHYALSEGKLHGSDATFDGFEDGKFYMSAPAPTGPLLRRKFAVLTSTVVETQRSEDGTVKLLVRLQDGQMVETVIIKHNGTHPRTTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVSPIRNVVFMGMGEPLNNYDAVLASIRGMADSRMFKLSPRHITLSTVGVVPRMKQLTIDAPETQLALSLHAPNQELRNRIVPSARAYRLDKLMDALDGHLRGPGVAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGVETIAGVVMVGGRGAGRRALIEYVMLAGVNDTEECGRELGELLKGRNVLVNLIPYNPTYAPGSEEFKEPTEEALQKFRAIVHEHGLLVTIRRHHGRDIDGACGQLAVKVVTA--GAKSGDGCSSGXXXXXSGGDIEDLVA 458          
BLAST of mRNA_A-nodosum_M_contig1047.1.2 vs. uniprot
Match: A0A836CND6_9STRA (Radical SAM core domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND6_9STRA)

HSP 1 Score: 422 bits (1086), Expect = 7.870e-136
Identity = 247/479 (51.57%), Postives = 308/479 (64.30%), Query Frame = 1
Query:   97 MVKKRILNPQPVLDEALLLKALREEGIKELHVRAAWSHALSEGKAHGSDANFDGFEHANFNMNAPAPTGP-----MLRRKFAVLTSKVVETQRSEDGTIKLLIRLQDGQMVEAVVIPH--GGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPETQLALSLHAPNQELRNRIVPSARAYRLDKLMDALDGHL-------------RGPG-IPPTAPLPSQMSSTA--VGSEGEAEGDVENVAGVAMV--------GGKGA-----GR-RALIEYVMLAGVNDTEECGRQLGELLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQ--------------AFRKIVHSQGLLVTIRRHHGRDIDGACGQLAVKVVASESGSVTANSCRAGGGSNGGGDIEDL 1380
            MVK+R+L+P P+LDE  LL+ LREEG+K +H    W +A+    AH +    DG ++    +    P  P     +++ +FAV TSKVV+ Q+S DGT KLL+ LQDGQ VE+V+IPH     H RNTLCVSSQ+GCQM CTFCATGTMGLKGDL  GEILEQ+LHA  VAP+RN+VFMGMGEPLNNY+AV++AIRGM+D + F +S RHITLSTVGVVP +R+LT DAP+TQLALSLHAPNQELRN+IVPSA A++L  LM A++ H+             RG G  PP    P      A  +G    A                     GG G      GR RALIEYV+L+GVNDT  C  +LG LLQG+++VVNLIPYN T   G + F+EP EE +               AF++IV + GL VT+RRHHGRDIDGACGQL +K  A  +  + + S + GG   GG DIED+
Sbjct:    1 MVKRRVLSPMPLLDEGCLLELLREEGMKPMHAHTVWHNAIV--LAHKTRQ--DGGDYTTTRLTEDIPKIPVRLNALIQERFAVFTSKVVQLQQSADGTTKLLVELQDGQRVESVIIPHLTADGHARNTLCVSSQIGCQMGCTFCATGTMGLKGDLLGGEILEQLLHACMVAPMRNIVFMGMGEPLNNYEAVMSAIRGMNDPKRFCISQRHITLSTVGVVPAIRRLTRDAPDTQLALSLHAPNQELRNQIVPSASAFKLPALMAAVEAHIGHTPAKAQASAAERGAGDSPPPGITPDDFGGVASTIGEVPPAXXXXXXXXXXXXXXXXXXKFGGGSGVTSRMFGRKRALIEYVLLSGVNDTRRCAHELGALLQGKSMVVNLIPYNATLVEG-DAFKEPIEEDIXXXXXXXXXXXXXXXAFKEIVMTYGLFVTVRRHHGRDIDGACGQLVLKTEAERAAGLASTSAQQGGC--GGTDIEDI 472          
BLAST of mRNA_A-nodosum_M_contig1047.1.2 vs. uniprot
Match: A0A6G0WFS9_9STRA (Radical SAM core domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WFS9_9STRA)

HSP 1 Score: 360 bits (924), Expect = 2.280e-114
Identity = 206/405 (50.86%), Postives = 257/405 (63.46%), Query Frame = 1
Query:   97 MVKKRILNPQPVLDEALLLKALREEGIKELHVRAAWSHALSEGKAHGSDANFDGFEHANFNMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRLQDGQMVEAVVIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPETQLALSLHAPNQELRNRIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPSQMSSTAVGSEGEAEGDVENVAGVAMVGGKGAGRRALIEYVMLAGVNDTEECGRQLGELLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVHSQ-GLLVTIRRHHGRDIDGACGQLAVKVVASE 1308
            MVKKR+L+PQP+LD   L   +   G+K +H +  W H  S+ + +    +    +H       P+   P+L + FA  T+ V E   S DGT+KLLI LQDG  VEAV++ H G   RNTLCVSSQVGCQM CTFCATGTMG+  DL AGEILEQ+ HA RVAPIRNVVFMGMGEPLNNYDAVLAAIR M+D  +F L+P++ITLSTVGV+ R+RQL  DAP  +LALSLHAP QELR +IVP+A+AY LDKLM A+D HL+                           D EN             R  ++EY+ML  VN + E    LG+LL G++V +NLIPYN T      EF+ P  E + AF++++  Q  L VTIR +HG DIDGACGQLAVK + +E
Sbjct:    1 MVKKRVLSPQPLLDVPSLTTFVEANGLKLIHAQKIWKHIASQVQTNSDAISIRDVKHL------PSQAYPLLEQHFAPFTTTVAEQHTSSDGTVKLLITLQDGHNVEAVIMKHSG---RNTLCVSSQVGCQMGCTFCATGTMGIIADLCAGEILEQLAHAFRVAPIRNVVFMGMGEPLNNYDAVLAAIRAMTD--IFGLAPKYITLSTVGVIHRIRQLKEDAPLVRLALSLHAPTQELRVKIVPTAKAYPLDKLMLAIDDHLK---------------------------DREN-------------RMVMMEYIMLKDVNVSIETAHDLGKLLHGKSVHINLIPYNATDVDA--EFQSPAREDIVAFKEVLRVQYQLKVTIRENHGMDIDGACGQLAVKKLDTE 352          
BLAST of mRNA_A-nodosum_M_contig1047.1.2 vs. uniprot
Match: A0A2D4C837_PYTIN (23S rRNA methyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C837_PYTIN)

HSP 1 Score: 359 bits (922), Expect = 4.840e-114
Identity = 205/400 (51.25%), Postives = 251/400 (62.75%), Query Frame = 1
Query:   97 MVKKRILNPQPVLDEALLLKALREEGIKELHVRAAWSHALSEGKAHGSDANFDGFEHANFNMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRLQDGQMVEAVVIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPETQLALSLHAPNQELRNRIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPSQMSSTAVGSEGEAEGDVENVAGVAMVGGKGAGRRALIEYVMLAGVNDTEECGRQLGELLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVHSQ-GLLVTIRRHHGRDIDGACGQLAVK 1293
            MVKKR L P P+ D+  L   LRE   KE+H    W H L++   H     F    H       P     +L + FA  T+ +V  QRS DGT+KLL+RLQDG  +EAVV+ H G   RNTLCVSSQVGCQM CTFCATGTMG+  DL +GEILEQ+ HA++VAPIRNVVFMGMGEPLNNYDAVLA IR M+   +F L+P+HITLSTVGV+ R+RQLT DAP  +LALSLHAP+QELR+ IVP+++AY LDKLM+A+D HL                                            GR  +IEY ML GVND+ E    LG+LLQ R+V VNLIPYN T      +FR P++E ++AF  ++     L VT+R +HG DIDGACGQLA+K
Sbjct:    1 MVKKRTLTPLPIFDQVALPAFLREHNFKEMHAXTXWRH-LAQNPTH----TFKQIPHV------PKALVTLLEQHFAHFTTTIVTQQRSSDGTVKLLLRLQDGHEIEAVVMKHKG---RNTLCVSSQVGCQMGCTFCATGTMGIIADLWSGEILEQLAHANQVAPIRNVVFMGMGEPLNNYDAVLATIRAMTS--VFGLAPKHITLSTVGVIHRIRQLTKDAPLVRLALSLHAPSQELRSEIVPTSKAYPLDKLMEAIDEHLA----------------------------------------LKEGRLVMIEYCMLDGVNDSIETAHVLGKLLQNRSVHVNLIPYNTTEV--GAQFRSPSKEQIRAFHAVLRDPYNLKVTVRENHGNDIDGACGQLALK 342          
BLAST of mRNA_A-nodosum_M_contig1047.1.2 vs. uniprot
Match: A0A485KGF8_9STRA (Aste57867_4064 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KGF8_9STRA)

HSP 1 Score: 358 bits (918), Expect = 2.720e-113
Identity = 202/409 (49.39%), Postives = 257/409 (62.84%), Query Frame = 1
Query:   97 MVKKRILNPQPVLDEALLLKALREEGIKELHVRAAWSHALSEGKAHGSDANFDGFEHANFNMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRLQDGQMVEAVVIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPETQLALSLHAPNQELRNRIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPSQMSSTAVGSEGEAEGDVENVAGVAMVGGKGAGRRALIEYVMLAGVNDTEECGRQLGELLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVH-SQGLLVT-----IRRHHGRDIDGACGQLAVKVVAS 1305
            MVKKR+L+PQP+LD A+L   + E G+K +H +  W H  ++ +   +D +    +H       P+   P+L  +FA  T+ V E   S DGT+KLLI LQDG  +EAV++ H G   RNTLCVSSQVGCQM CTFCATGTMG+  DL AGEILEQ+ HA RVAPIRNVVFMGMGEPLNNYDAVL+AIR M+D  +F L+P++ITLSTVGV+ R+RQL VDAP  +LALSLHAP Q++R +IVP+A+AY L+KLM A+D HL G                            EN             R  ++EY+ML  +ND  E    LG+LL G++V +NLIPYN T      EF+ P  + +  F+ I+     L VT     IR +HG DIDGACGQLAVK + S
Sbjct:    1 MVKKRVLSPQPLLDPAILTAFMEENGLKPVHAQKIWKHIATQVQTSTADISIRDVQHL------PSHAYPLLEDQFAAFTTTVAEQHTSSDGTVKLLITLQDGHNIEAVIMKHSG---RNTLCVSSQVGCQMGCTFCATGTMGIIADLCAGEILEQLAHAFRVAPIRNVVFMGMGEPLNNYDAVLSAIRAMTD--VFGLAPKYITLSTVGVIHRIRQLKVDAPLIRLALSLHAPTQDIRVKIVPTAKAYPLEKLMAAIDDHLEGR---------------------------EN-------------RMVMMEYIMLKDINDAMETAHDLGKLLHGKSVHINLIPYNATEVDA--EFQSPARDDIVKFKDILRVDYNLKVTVCVVIIRENHGMDIDGACGQLAVKKLES 356          
BLAST of mRNA_A-nodosum_M_contig1047.1.2 vs. uniprot
Match: A0A3R7YYH6_9STRA (Radical SAM core domain-containing protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7YYH6_9STRA)

HSP 1 Score: 357 bits (916), Expect = 4.760e-113
Identity = 204/401 (50.87%), Postives = 255/401 (63.59%), Query Frame = 1
Query:   97 MVKKRILNPQPVLDEALLLKALREEGIKELHVRAAWSHALSEGKAHGS-DANFDGFEHANFNMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRLQDGQMVEAVVIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPETQLALSLHAPNQELRNRIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPSQMSSTAVGSEGEAEGDVENVAGVAMVGGKGAGRRALIEYVMLAGVNDTEECGRQLGELLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVHSQ-GLLVTIRRHHGRDIDGACGQLAVK 1293
            MVKKR+L+P P+LD ALL   + E G+K +H +  W H  ++ +A  + D +     H       P+   P+L  KFA  T+ V E   S DGT+KLLI LQDG  +EAV++ H G   RNTLCVSSQVGCQM CTFCATGTMG+  DL AGEILEQ+ HA RVAPIRNVVFMGMGEPLNNYDAVLAAIR M+D  +F L+P++ITLSTVGV+ R+RQL  DAP  +LALSLHAP Q+LR +IVP+A+AY LDKLM A+D HL+                           D +N             R  ++EY+ML  VN        LG+LL G++V +NLIPYN T      EF+ PT + + AF+ ++ +   L VTIR +HG DIDGACGQLAVK
Sbjct:    1 MVKKRVLSPAPLLDTALLTAFVEENGLKLVHAQKIWKHISTQVQAQSTADISVRDIPHL------PSHAYPLLEAKFAAFTTTVAEQHTSSDGTVKLLITLQDGHNIEAVIMKHSG---RNTLCVSSQVGCQMGCTFCATGTMGIIADLCAGEILEQLAHAFRVAPIRNVVFMGMGEPLNNYDAVLAAIRAMTD--VFGLAPKYITLSTVGVIHRIRQLKEDAPLVRLALSLHAPTQDLRVQIVPTAKAYPLDKLMLAIDDHLK---------------------------DRDN-------------RMVMMEYIMLKHVNVAIATAHDLGKLLAGKSVHINLIPYNATDVDA--EFQSPTRDEIVAFKDVLRTDYNLKVTIRENHGMDIDGACGQLAVK 348          
BLAST of mRNA_A-nodosum_M_contig1047.1.2 vs. uniprot
Match: A0A8K1C3U0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3U0_PYTOL)

HSP 1 Score: 357 bits (915), Expect = 8.950e-113
Identity = 203/400 (50.75%), Postives = 248/400 (62.00%), Query Frame = 1
Query:   97 MVKKRILNPQPVLDEALLLKALREEGIKELHVRAAWSHALSEGKAHGSDANFDGFEHANFNMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRLQDGQMVEAVVIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPETQLALSLHAPNQELRNRIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPSQMSSTAVGSEGEAEGDVENVAGVAMVGGKGAGRRALIEYVMLAGVNDTEECGRQLGELLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVHSQ-GLLVTIRRHHGRDIDGACGQLAVK 1293
            MVKKR L+P P+ D+  L   LRE   KE+H  A W H     K    D             N PA    +L   F   +  +V  QRS DGT+KLL+RLQDG  +EAV++ H G   RNTLCVSSQVGCQM CTFCATGTMG+  DL +GEILEQ+ +A++VAPIRNVVFMGMGEPLNNYDAVLAAI+ M+   +F L+P+HITLSTVGV+ R+RQLT DAP  +LALSLHAP+QELR+ IVP+++AY LDKLM+A+D HL                                            GR  ++EY ML GVND+ E    LG+LLQ R+V VNLIPYN T      EFR P+ E ++AF  ++     L VTIR +HG DIDGACGQLA+K
Sbjct:    1 MVKKRTLSPLPIFDQEALPAFLREHNFKEIHALAIWRHLAQHPKTALRDI-----------PNVPARLLTLLDEHFVHFSISLVTEQRSSDGTVKLLLRLQDGHEIEAVIMKHTG---RNTLCVSSQVGCQMGCTFCATGTMGIIADLCSGEILEQLAYANQVAPIRNVVFMGMGEPLNNYDAVLAAIKAMTS--VFSLAPKHITLSTVGVIHRIRQLTKDAPLVRLALSLHAPSQELRSEIVPTSKAYPLDKLMEAIDEHLA----------------------------------------LKEGRLVMVEYCMLEGVNDSIETAHVLGKLLQNRSVHVNLIPYNSTEV--GAEFRSPSPEQIRAFHAVLRDPYNLKVTIRENHGNDIDGACGQLALK 342          
BLAST of mRNA_A-nodosum_M_contig1047.1.2 vs. uniprot
Match: A0A024TET1_9STRA (23S rRNA methyltransferase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TET1_9STRA)

HSP 1 Score: 354 bits (909), Expect = 3.920e-112
Identity = 201/400 (50.25%), Postives = 255/400 (63.75%), Query Frame = 1
Query:   97 MVKKRILNPQPVLDEALLLKALREEGIKELHVRAAWSHALSEGKAHGSDANFDGFEHANFNMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRLQDGQMVEAVVIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPETQLALSLHAPNQELRNRIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPSQMSSTAVGSEGEAEGDVENVAGVAMVGGKGAGRRALIEYVMLAGVNDTEECGRQLGELLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVHSQ-GLLVTIRRHHGRDIDGACGQLAVK 1293
            MVKKR+L+P P+LD ALL   +   G+K +H +  W H  ++ +   S AN          ++ P+   P+L   FA  T+ V E   S DGT+KLLI LQDG  +E+V++ H G   RNTLCVSSQVGCQM CTFCATGTMG+  DL AGEILEQ+ HA RVAPIRNVVFMGMGEPLNNYDAVL AIR M+D  +F L+P++ITLSTVGV+ R+RQL  DAP  +LALSLHAP Q+LR +IVP+A+AY LDKLM A+D HL+                           D EN             R  ++EY+ML  VN   +    LG LLQG++V +NLIPYN T      EF+ P+++ + AF+ I+ ++  L VT+R +HG DIDGACGQLAVK
Sbjct:    1 MVKKRVLSPAPLLDPALLTAFVEANGLKLVHAQKIWKHISAQVQTQ-STANIS----VRDVLHLPSHAYPLLEDSFATFTTTVTEQHTSSDGTVKLLITLQDGHNIESVIMKHSG---RNTLCVSSQVGCQMGCTFCATGTMGIIADLCAGEILEQLAHAFRVAPIRNVVFMGMGEPLNNYDAVLTAIRAMTD--IFGLAPKYITLSTVGVIHRIRQLKEDAPLVRLALSLHAPTQDLRVQIVPTAKAYPLDKLMLAIDDHLK---------------------------DREN-------------RMVMMEYIMLKDVNVAPDTAHDLGRLLQGKSVHINLIPYNATDVDA--EFQSPSQDEIVAFKDILRAEYHLKVTVRENHGMDIDGACGQLAVK 348          
BLAST of mRNA_A-nodosum_M_contig1047.1.2 vs. uniprot
Match: A0A067CK14_SAPPC (Cfr family radical SAM enzyme n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CK14_SAPPC)

HSP 1 Score: 354 bits (908), Expect = 6.930e-112
Identity = 198/400 (49.50%), Postives = 252/400 (63.00%), Query Frame = 1
Query:   97 MVKKRILNPQPVLDEALLLKALREEGIKELHVRAAWSHALSEGKAHGSDANFDGFEHANFNMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRLQDGQMVEAVVIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPETQLALSLHAPNQELRNRIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPSQMSSTAVGSEGEAEGDVENVAGVAMVGGKGAGRRALIEYVMLAGVNDTEECGRQLGELLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVHSQ-GLLVTIRRHHGRDIDGACGQLAVK 1293
            MVKKR+L+P P+LD  LL + L   G+K++H +  W +  S+ +A  ++ +             P    P+L   F + ++ + E   S DGT+KLL+ LQDG  VEAV++ H G   RNTLCVSSQVGCQM CTFCATGTMG+  DL AGEILEQ+ HA  VAPIRNVVFMGMGEPLNNYDAVL AI+ M+   +F L+P++ITLSTVGV+ R+RQL  DAP  +LALSLHAP QE+R +IVP+A+AY LDKLM A+D HL+                           D EN             R  ++EY+ML GVND  E    LG LL GR+V VNLIPYN T      E++ PT+E + AF  I+ ++  + VT+R +HG DIDGACGQLAVK
Sbjct:    1 MVKKRVLSPAPLLDPKLLPEFLEAHGMKQVHAQKIWKYIASQVQAQNANVSIRDIPQL------PKELYPLLEANFRIFSTTIAEKHVSRDGTVKLLVTLQDGHNVEAVIMKHSG---RNTLCVSSQVGCQMGCTFCATGTMGIIADLAAGEILEQLAHAFCVAPIRNVVFMGMGEPLNNYDAVLGAIKAMTS--VFGLAPKYITLSTVGVIHRIRQLKEDAPLVRLALSLHAPTQEIRVKIVPTAKAYPLDKLMAAIDDHLK---------------------------DREN-------------RMVMMEYIMLRGVNDALETAHDLGRLLAGRSVHVNLIPYNATDVDA--EYQSPTKEEIMAFHGILRTEYNIKVTVRENHGMDIDGACGQLAVK 347          
BLAST of mRNA_A-nodosum_M_contig1047.1.2 vs. uniprot
Match: A0A5D6XYC7_9STRA (Radical SAM core domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYC7_9STRA)

HSP 1 Score: 353 bits (907), Expect = 1.680e-111
Identity = 207/400 (51.75%), Postives = 252/400 (63.00%), Query Frame = 1
Query:   97 MVKKRILNPQPVLDEALLLKALREEGIKELHVRAAWSHALSEGKAHGSDANFDGFEHANFNMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRLQDGQMVEAVVIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPETQLALSLHAPNQELRNRIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPSQMSSTAVGSEGEAEGDVENVAGVAMVGGKGAGRRALIEYVMLAGVNDTEECGRQLGELLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVH-SQGLLVTIRRHHGRDIDGACGQLAVK 1293
            MVKKR L+P PV D+  L   LRE G KE+H    W H      AH + + F      +  + A      ML  +FAV T+ +   QRS DGT+KLL+RLQDG  VEAV++ H G   RNTLCVSSQVGCQM CTFCATGTMG+  DL +GEILEQ+ +A+ VAPIRNVVFMGMGEPLNNYDAVLAAIR M+   +F L+P+HITLSTVGV+ R+RQLT DAP  +LALSLHAP QE+R+ IVP+++AY LDKLM A+D HL                  A+                        GR  ++EY ML GVND  E    LG+LLQGR+V VNLIPYN T      +FR P+  A++ F  ++  S  L  TIR +HG DIDGACGQLA+K
Sbjct:    1 MVKKRTLSPLPVFDQQALPAFLREHGFKEVHALTIWRHLA----AHPTHS-FAQVPKLSKRLAA------MLEERFAVFTASLAAEQRSRDGTVKLLLRLQDGHEVEAVIMRHTG---RNTLCVSSQVGCQMGCTFCATGTMGIIADLCSGEILEQLAYANTVAPIRNVVFMGMGEPLNNYDAVLAAIRAMTS--VFGLAPKHITLSTVGVIHRIRQLTKDAPLVRLALSLHAPTQEMRSEIVPTSKAYPLDKLMQAVDEHL------------------AIKE----------------------GRLVMVEYCMLEGVNDGVETAHILGQLLQGRSVHVNLIPYNTTDV--GAQFRSPSPAAIREFHSVLRESYNLKATIRENHGMDIDGACGQLALK 342          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1047.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLU3_ECTSI4.110e-23075.00Radical SAM core domain-containing protein n=2 Tax... [more]
A0A836CND6_9STRA7.870e-13651.57Radical SAM core domain-containing protein n=1 Tax... [more]
A0A6G0WFS9_9STRA2.280e-11450.86Radical SAM core domain-containing protein n=1 Tax... [more]
A0A2D4C837_PYTIN4.840e-11451.2523S rRNA methyltransferase n=1 Tax=Pythium insidio... [more]
A0A485KGF8_9STRA2.720e-11349.39Aste57867_4064 protein n=1 Tax=Aphanomyces stellat... [more]
A0A3R7YYH6_9STRA4.760e-11350.87Radical SAM core domain-containing protein n=10 Ta... [more]
A0A8K1C3U0_PYTOL8.950e-11350.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024TET1_9STRA3.920e-11250.2523S rRNA methyltransferase n=2 Tax=Aphanomyces inv... [more]
A0A067CK14_SAPPC6.930e-11249.50Cfr family radical SAM enzyme n=2 Tax=Saprolegnia ... [more]
A0A5D6XYC7_9STRA1.680e-11151.75Radical SAM core domain-containing protein n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1047contigA-nodosum_M_contig1047:3753..11005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLU3
PFAMsFer4_14,Radical_SAM
Model size2174
Max annot lvl2759|Eukaryota
KEGG koko:K06941
Hectar predicted targeting categoryother localisation
Exons8
Evalue1.24e-234
EggNOG OGsCOG0820@1|root,2QQ98@2759|Eukaryota
Ec32 ortholog descriptionRadical SAM
Ec32 orthologEc-26_001240.1
EC2.1.1.192
DescriptionRadical SAM superfamily
Cds size1524
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1047.1.2prot_A-nodosum_M_contig1047.1.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1047 4307..10909 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866421.7232783-UTR-A-nodosum_M_contig1047:3752..43061680866421.7232783-UTR-A-nodosum_M_contig1047:3752..4306Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1047 3753..4306 -
1680866421.884238-UTR-A-nodosum_M_contig1047:10909..110051680866421.884238-UTR-A-nodosum_M_contig1047:10909..11005Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1047 10910..11005 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866421.7908401-CDS-A-nodosum_M_contig1047:4306..46821680866421.7908401-CDS-A-nodosum_M_contig1047:4306..4682Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 4307..4682 -
1680866421.803272-CDS-A-nodosum_M_contig1047:5940..60831680866421.803272-CDS-A-nodosum_M_contig1047:5940..6083Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 5941..6083 -
1680866421.8144064-CDS-A-nodosum_M_contig1047:6337..66341680866421.8144064-CDS-A-nodosum_M_contig1047:6337..6634Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 6338..6634 -
1680866421.8323622-CDS-A-nodosum_M_contig1047:7148..73391680866421.8323622-CDS-A-nodosum_M_contig1047:7148..7339Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 7149..7339 -
1680866421.8464518-CDS-A-nodosum_M_contig1047:7577..77131680866421.8464518-CDS-A-nodosum_M_contig1047:7577..7713Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 7578..7713 -
1680866421.8556967-CDS-A-nodosum_M_contig1047:8035..81251680866421.8556967-CDS-A-nodosum_M_contig1047:8035..8125Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 8036..8125 -
1680866421.865046-CDS-A-nodosum_M_contig1047:8387..85911680866421.865046-CDS-A-nodosum_M_contig1047:8387..8591Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 8388..8591 -
1680866421.8761284-CDS-A-nodosum_M_contig1047:10822..109091680866421.8761284-CDS-A-nodosum_M_contig1047:10822..10909Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 10823..10909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1047.1.2

>prot_A-nodosum_M_contig1047.1.2 ID=prot_A-nodosum_M_contig1047.1.2|Name=mRNA_A-nodosum_M_contig1047.1.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=508bp
MVKKRILNPQPVLDEALLLKALREEGIKELHVRAAWSHALSEGKAHGSDA
NFDGFEHANFNMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRL
QDGQMVEAVVIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTA
GEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLS
PRHITLSTVGVVPRMRQLTVDAPETQLALSLHAPNQELRNRIVPSARAYR
LDKLMDALDGHLRGPGIPPTAPLPSQMSSTAVGSEGEAEGDVENVAGVAM
VGGKGAGRRALIEYVMLAGVNDTEECGRQLGELLQGRNVVVNLIPYNPTY
APGSEEFREPTEEALQAFRKIVHSQGLLVTIRRHHGRDIDGACGQLAVKV
VASESGSVTANSCRAGGGSNGGGDIEDLVAKSNRGWSRGTSGGTESKRRL
SRKDPYSSDAVVKARKGNVVVRESTGWSRRGRVALAGMVLGLGVVVAVAV
ARARRRG*
back to top

mRNA from alignment at A-nodosum_M_contig1047:3753..11005-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1047.1.2 ID=mRNA_A-nodosum_M_contig1047.1.2|Name=mRNA_A-nodosum_M_contig1047.1.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7253bp|location=Sequence derived from alignment at A-nodosum_M_contig1047:3753..11005- (Ascophyllum nodosum dioecious)
ATAGGGCACGGGAACTGGTATCCTACGCATCGATTTTGACCATCGATATC AACGGTAGTTTAGTCATTGGCCACGTGCTGAGCAGTGATTCGACTCATGG TGAAGAAACGTATCCTCAACCCCCAGCCTGTCCTTGATGAGGCCTTGCTG TTGAAAGCTCTGCGCGAAGAGGGTATCAAGGAGGTGAGCCATTTGACTTG GCACATATGTAATATACATGCCGGTATTTGATCTTTATCTACAGTACTAG AGCTACACAGCACAAGGCGCAGCAGTACAAAAGTAGATAAAGTAACTCAG ACAATTGAAGTCGATGCCATCTTTTTAACAGCCACACCAGCGTCCCCCAC GACTGACGTTGCTGAGTCTCATGCATGAAAAATGAATCATCTGCTGACGG AGGTAAAATCAAGATGTTTTGAGTCATAAAGGTACATCGCTGATACCAGC TGTTGGGGGCAACCTGACAGTCCCGACGGCGTCAACAATCTACAGTACAA ACAGTAGTGCATTTACAGAAAGTGTGGAAGTATTTATGTCCTGTATGTGT ATGTACGGCCATCACACATTGCAGATTGGGCATCAACTGGTATAGGTTGT CAATACTGCTCGTGGTCAGCTGAACAGCGAGACAATCTGGCCGTCACGTC CCGCTTCAGCTCGCTCATTATCCGCACTCAGGCTGAATTCTGGTGTACAA GTAGCACCATATTCAGCTTGAGTATAGAGAATGGGAAGCCTGGCGCGGGA CGGGGCGGCCGAATCCGTCTCGCGAGACCAAATTCTCAGGCGCGAACGAG GATAAGGAAATATTCATTTTCCCTGTTCAACTGACCAGGAGCAGGATTGG AAACCTTACCCGGTTGATCTATACTCTGCTATATGCGATGGCCATACATA CTACTGCTGTACTTGTGCACTCCTAGTACTACAAATAAAGCAGTCCCGTT AATAACTATAAAGAAAATGTGAAAGCATGTAAACCTTCCGAGCATCCGCA CCGTTCCGGGGGGAAATTGTGGAAATATCTATTTAATAATTGGGAACATT GGCTGATTCGCACAAAAATTCCACATGGGATTCATAGTTGTAGTCGGGTT ATGTCCCCCAATGTTAGTCAGCAGTATAATCTGGGGGAGAGACCCACCCT TATACTGCTGTACACTTACACATATCGCCATGTGTGTGTGTGTGTGTTTT CTTCCCATCCATTCTGGACATCAAGTTCGTTGGACGTACCAGCCGGGGTC ACACAGGAGGAAGGTCACACAGGATTTTTAATCCACCTTCCTTCTGCGGT GCGTGCTCTTGATTTTTGTCGCGAGAAGGATTCAGCCATTCCTTTCCCTC GTCGACCGTGAAGTCGAATTTGTGTACTAACGAATTAATCGTTCTCCATC CGTTGGGCATTTTATTTTGGTTTTTTGTTTTTAGTGAGAAAAATCCCGTT TGCCGGGATCGAACTCACGTCCCAACGTGTCAGAAGGTTACGAGGTGCCT ACTGAGCTACCGGGGTCGACCGGCTGATGGATACACCAAAATGAGCGAGT AGTTGTGTACACAATTTGCACCAAATACCTTACTAATAAATAATACTACG CTTGGTAGAGGCCTCGTATCATGAACATCCCATGGAATGTTCACGTGGCT CTAGATCGACTCGGTTGGAGGCGCTGAGGCACAAAAAGGAAAGACTCTGA TAGGAATTTGACTTCTGAGGTGTATTTCTTGTAGCATGGGTTTCACGTTA CATTTTACATTTTTCGATCATAACCCTTTTTTTCCCTAATAATTTCTGAT TACTCAGGAGGTTTAGCTGCGTTCAGATTTTTTCCGAACGCCCTGTGACA ATCGTTTGGCGCCCGCTATTGCTGAAAGAATGTTCCCCCGAGGTGGCGCA GTAGGGGCCGTACTCAACAAAAACCGAGCAGTGTTGTCGACGCAACATCA GAGGTTTTGTCTTTGCAGCCTATGATCCTATTTAAACGTTTTGATATTTT TTCCCCCCTGACTGGGGGATGCTCAGAAGGTCTAGATGCGTTCATATTTT TCTTTTTATCATCGCGGATTGCTTGGGAAGGATCCCCATCCCTTCACGGA ACTATATTCACAGTTGATTCCTCGTGGAAGAGTCGCCTCGGCTCTCTCCA CAGATTCTCCGGTACCATATTCAATGGCGATTGCAGTAGGAGCGCTCGGG CGCTAGGGAGGCGGTCTCGGCATGGGGAGCCACGCGTGCACAATATCCGA CTCAATCGACGCGGCTTCAAAATCTCCTTGAAGCTCGTTGGAGTCGCTGC CGGCAACACCTTTGTTAAGACCTTGTTCTATGATGTTGGTAGCCCATGTT CTTATCATGTACTACATGCAGTACATTCAACGTCTTCGCCATCGTACCGA ATCCTGCGCGGCAGCTTCACGTTCGAGCTGCGTGGAGTCATGCTCTGTCG GAGGGAAAAGCTCACGGGTCAGACGCGAACTTCGATGGCTTCGAGCACGC CAACTTCAACATGAACGCCCCCGCACCCACCGGCCCGATGCTCAGGCGTA AGTTTGCAGTTCTGACATCGAAGGTGGTGGAAACCCAGCGATCGGAAGAC GGAACCATCAAGCTTCTGGTGCGTGGGATTTCATAAACAGCAACATCGAC GGTTCTTTCTTCTCCTCATACGTTTTAAGGTACCGACCGTACAGATGGTC ATCTGTCCAAAAATCAGTGTTACCCATCTGGCTCTTTGGTTGCTGCATGA GCTCCGAAACGCTCGAGAGGCGTAATCCTGCAGGGAACGCGACGCGCAAC AACTCCTGCTTCTCTCTGTCTGTCCCGTAATCCGCTCGTGTCGTATGTGG CGCGCCAATGTGACGCATCGTTCCGCGCAGATTCGTCTGCAGGACGGGCA GATGGTGGAGGCCGTTGTCATCCCTCACGGGGGCACGCACCCTCGGAACA CCCTCTGCGTTTCTTCTCAGGTGCGAGGCAACGCGCTCCTTTCCACCATG GGACAACTCTTGCGGTTTTGCGAAATAACTGATCGGCGTGCACGATGCGT AACCGCTGCTGACGTCAAATATTCTGCAATGGGATCAGTTTCAGGGCTGT TGGAGTGATTGGAGTTTTAGGTCAAGATAACTAGAATAATTTGATCGTAC ATAATCACAATCCAGCTAGGTTACGTAGCCCGGGAACTCATGCACGGTTG TGCGTAATCGCGTCCAGCGCGGGGAGCGTTGCGAAGACGCGGTTGGAGAC TTGCTTGCACTGGGTCCTTTGTCACGTCTCGACCCTTGGCAGGTCGGGTG TCAAATGGCATGCACGTTTTGCGCCACCGGGACGATGGGCTTGAAGGGAG ACCTCACCGCCGGAGAGATTCTGGAGCAAGTTCTCCACGCCTCAAGAGTC GCCCCCATTCGCAACGTGGTCTTCATGGGTGAGTTAGGCTCCGGGAGATC GTTTGCGTTCAGGATGGTTCCAACCTAAGTTCTACGCGTGCGTCTCCTTT TCCCATTTTTGGGCGATGCGGTTGAGGAGCTGAATTGTTTGGGATGATCC ATCGGACAGTCCAGCTTGTTTTGAGCGCCTTCGTTGGTGCATAGCCAGCA TCTGCATGTCTGAGGAAGCGTCAAGACTTATGAAAAGCTCGTCGCCCTTG TCCCGACCTTGTGGAGGCATGGGAGAGCCGCTAAATAACTACGACGCGGT TTTGGCGGCTATCCGAGGGATGTCGGACGGTCGAATGTTCAAGCTCTCTC CTCGGCACATCACCCTCTCCACCGTTGGCGTCGTGCCTCGCATGAGGCAG CTCACGGTCGACGCACCAGAAACTCAGCTGGCGTTGTCGCTGCACGCACC CAATCAGGTACAGCGGGGATAGACGCCGGGCCGCTTGTAACCGGTTTGCG CGTAGCAGCGATCCTCTTGACAACTCCAGAGGTACACAATTACTGTAAAG TATACTTGAATTTACCTTGAACGAAGCACCTCGGATGCCATGTAACTGGG ACCGGTTGTGCTGTTGAAGGCCAGCCTTGGTCTCCGACTTTGATGAGCAG TACCGATAGAGGCTGAGGCTGGCGGAAGTTGTGTCGTGTACCAGGTATTT TCGGAGACTTTTCTATCGGCAAAGCTTTGTCCTAAGCAAACGATTCTCTG CGCACACGATGTAATAAATAAGTAGCTTAAGTACGGTAGAGTCCCTCCCT GATGTGCATGGACGTGGAGGTCGAGCCACAGCCCACGCCTACTAAAGTAC GACAAGGGTGTCCTGCCAACGGTTTGGCCATCTTACGGTCACACATGTCA CGGAGAGTCGAAGGGCGCCGTCCTCGTTTGTTCTACGTCCTCCGTGCGAG ACCCGTTCTTACGCTGCGCAGGAGCTCCGCAACAGGATTGTTCCCTCGGC TCGCGCCTACCGACTTGACAAGCTCATGGATGCCTTGGACGGTCATCTAA GGGGACCAGGGATTCCGCCAACAGCGCCCCTGCCGTCGCAGATGTCAAGC ACTGCTGTCGGAAGTGAGGGTGAAGCTGAAGGGGATGTCGAGAACGTCGC AGGCGTCGCCATGGTCGGAGGAAAGGGGGCTGGGCGGAGGGCGTTGATCG AGTACGTTATGCTGGCTGGCGTCAATGACACAGAGGAGTGTGGCCGACAG CTCGGGGAGCTTTTGCAGGTACAGTAGACATCGATCGTAATTTATCATCC CGGGCGCCGTTGCTATTATAGTGTGGAGGGCCTTAGCAACGACAAAACAT AAAAAAAGCTTCATATTCTCTACAAATATCCCGTCGTATATTTCGGTCTA CAACGAAGTGGCGTCTGGTTTGATCGTGACGTGTCTCTCTCTCTTTATTA TTGGTTTCATACTCGTTTTTTCACCGCCTGGAGAACGCTAACACTATTTT TCCCTTATAACTTCTGCCACAGGGACGCAACGTGGTGGTGAATCTCATCC CTTATAACCCTACGTACGCGCCCGGATCGGAGGAGTTTCGAGAGCCCACG GAGGAAGCTCTGCAGGCCTTCAGGAAGATCGTTCACAGCCAAGGATTACT GGTCACCATACGAAGGTGAGAGCAACCACCAACGGCGGATGCTTGCTAAT ATATTTTTTGGCTCGAAAGTACTTGAGAATTGAGAGTACTTGAGAATTGA GACAATTATTGAGTTTTATGCGGCCGGTCGCCCCGGTAGCTCAGAGGTAC CATGTAACCTCTGACACGTTGGGACGTGAGTTCGATCCCGCCAGACGGGA TTTTTCTCACTGAAAAACTAAAAAATGAAAATAAAAAATGCCCAACGGGT GGAGAACGATTAAATCGTTAGTACACAAAATTCGACTCCACGGTCGACGA GGGAAGGAATGGCTGAATCCTTCTCACGAGAAAAATTAAGGCACGCACCG CAGAAAGAAGGTGGATGAGAAGTCCTGTGTTACCTTCCTCCTGTGTGACC CCGGCTGGTACGTCCAACGAACTTGATGTCCAGAATGAATGGGAAGAAAA CACACACACACACACACATGTAGCTGCCAACTCGGATAACTGCCAACTCG GATAACCTGGGGAGCAACAAGGAAGCAGGGGGGGGAGCACAAGGTGCTCA GGGCTCAAGTAAGATTTGTACAAGTAGAGAGAGTGTGTCCCCTTTGTCGC GTTTGATCAGAGTTTTTCGTAACAAGTATCATTGACCCCCCTTGGGAGGA TCAATGCGAGTGGCATAGAATGACTAGGATGACAAGGCCGGATTGCGCGG TTATGTGCAATTTAATAAATACACACACACACTCCCCTTTGTCGCGTCTG ATCAGAGGTTTTCGTAATAAGTATCATTGATCCCCCCTCGGGAGGATCAA TGCGAGTGGCATAGAATGACTAGGATGACAGGGCCGGATTGCGTGGTTAT GTGCAATTTAATAAATACACACACACACACACACACACATTTCCACGGCC TCGTTTGAGCGAACCCGTGTGGTTCCTTTTTGTCAAAACCTAAGTCCGCT CTTGCTCCTGTCAATAGAGCATCACCGACACCATGTGAAGCATTGTGAAA TTTTACCCTACACGCTCGCATGCCCAGATCTGAAACGCCATTTGCAAATG CCCAGCCCTCCCCCTCCCCCCACCCATTCTATTCTACTCTACTCCAGTCT AACTCCGTGGCTCATGCACGACCCCTGAAGTACCCCCAACATATTTAGGA AGTAGATAAAAGTTCTGATGTTGACAACAGTGTGCCACTTCTATGAGGCG CAAACGATGTCCCATGCGTTTTCTGCCGCGGTACCTCGATGTCATTCGCA TCACCGGTGTCACTTTACTTCAGGCACCACGGGCGCGACATCGACGGCGC GTGCGGCCAGCTAGCCGTGAAGGTGGTCGCCAGTGAGTCAGGGTCAGTGA CGGCGAACTCTTGCAGGGCCGGGGGCGGCAGCAATGGTGGGGGAGACATC GAGGATCTGGTCGCGAAGAGTAACCGCGGGTGGTCGAGGGGCACCAGCGG CGGGACGGAGAGCAAACGTCGATTAAGTCGGAAAGATCCATATTCGTCGG ATGCTGTGGTCAAGGCCAGAAAAGGTAACGTTGTTGTTAGGGAAAGCACG GGTTGGTCGCGCAGGGGTAGGGTGGCGTTGGCTGGGATGGTATTGGGCCT GGGAGTCGTCGTGGCGGTGGCTGTGGCGCGCGCTCGACGGAGAGGGTGAT CTCTCTCAGTGAGAGCAGCTGCCGTGAAACTTTAAAAAGGGACAAGAGCT CAGGATGACAGGCATTCGGTTCATGTACGACTGTGAATAGTGGTGTATAA TGTGCACCCTACGGGTGTAGAGTCAAGTGCGTCCAACTGCTGGACTGTCG TTACTGGGGAAGACGTACAACACCTTTTTTGCCTTGTTCTCACACTGTCG AGACTTCATCTCCAAACATAGCGAGCAACGAGGTCCATGACGGTGGAGGC CTTGAGCCGGTGAAGCTGGCACGCGAGCCAGCATCCAGTTGTCCCAAGGT CCTGTGCATCCCTGAAAAACGCCCCCAGAATCTTGCCTGTTCGCCGCTCC TTGTTGGCTCCCGTAGGAAGAATATACAGACCATGGGGAGAGATCTCAGC TTTCCCCTCAAAACCCTCGCGGTTGGCGCCTTTGATTCTCTCGCCCAAGA GTTCAGCACGAGTTCAGCACTCCCCTGGCTCGTCGACAATCGAGCTGGCC TCCGCCCTCACCGCTGAATTATGTTTTGAGTGCATGGTAGGTGTAGGTGT AGC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1047:3753..11005-

>mRNA_A-nodosum_M_contig1047.1.2 ID=mRNA_A-nodosum_M_contig1047.1.2|Name=mRNA_A-nodosum_M_contig1047.1.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at A-nodosum_M_contig1047:3753..11005- (Ascophyllum nodosum dioecious)
ATGGTGAAGAAACGTATCCTCAACCCCCAGCCTGTCCTTGATGAGGCCTT
GCTGTTGAAAGCTCTGCGCGAAGAGGGTATCAAGGAGCTTCACGTTCGAG
CTGCGTGGAGTCATGCTCTGTCGGAGGGAAAAGCTCACGGGTCAGACGCG
AACTTCGATGGCTTCGAGCACGCCAACTTCAACATGAACGCCCCCGCACC
CACCGGCCCGATGCTCAGGCGTAAGTTTGCAGTTCTGACATCGAAGGTGG
TGGAAACCCAGCGATCGGAAGACGGAACCATCAAGCTTCTGATTCGTCTG
CAGGACGGGCAGATGGTGGAGGCCGTTGTCATCCCTCACGGGGGCACGCA
CCCTCGGAACACCCTCTGCGTTTCTTCTCAGGTCGGGTGTCAAATGGCAT
GCACGTTTTGCGCCACCGGGACGATGGGCTTGAAGGGAGACCTCACCGCC
GGAGAGATTCTGGAGCAAGTTCTCCACGCCTCAAGAGTCGCCCCCATTCG
CAACGTGGTCTTCATGGGCATGGGAGAGCCGCTAAATAACTACGACGCGG
TTTTGGCGGCTATCCGAGGGATGTCGGACGGTCGAATGTTCAAGCTCTCT
CCTCGGCACATCACCCTCTCCACCGTTGGCGTCGTGCCTCGCATGAGGCA
GCTCACGGTCGACGCACCAGAAACTCAGCTGGCGTTGTCGCTGCACGCAC
CCAATCAGGAGCTCCGCAACAGGATTGTTCCCTCGGCTCGCGCCTACCGA
CTTGACAAGCTCATGGATGCCTTGGACGGTCATCTAAGGGGACCAGGGAT
TCCGCCAACAGCGCCCCTGCCGTCGCAGATGTCAAGCACTGCTGTCGGAA
GTGAGGGTGAAGCTGAAGGGGATGTCGAGAACGTCGCAGGCGTCGCCATG
GTCGGAGGAAAGGGGGCTGGGCGGAGGGCGTTGATCGAGTACGTTATGCT
GGCTGGCGTCAATGACACAGAGGAGTGTGGCCGACAGCTCGGGGAGCTTT
TGCAGGGACGCAACGTGGTGGTGAATCTCATCCCTTATAACCCTACGTAC
GCGCCCGGATCGGAGGAGTTTCGAGAGCCCACGGAGGAAGCTCTGCAGGC
CTTCAGGAAGATCGTTCACAGCCAAGGATTACTGGTCACCATACGAAGGC
ACCACGGGCGCGACATCGACGGCGCGTGCGGCCAGCTAGCCGTGAAGGTG
GTCGCCAGTGAGTCAGGGTCAGTGACGGCGAACTCTTGCAGGGCCGGGGG
CGGCAGCAATGGTGGGGGAGACATCGAGGATCTGGTCGCGAAGAGTAACC
GCGGGTGGTCGAGGGGCACCAGCGGCGGGACGGAGAGCAAACGTCGATTA
AGTCGGAAAGATCCATATTCGTCGGATGCTGTGGTCAAGGCCAGAAAAGG
TAACGTTGTTGTTAGGGAAAGCACGGGTTGGTCGCGCAGGGGTAGGGTGG
CGTTGGCTGGGATGGTATTGGGCCTGGGAGTCGTCGTGGCGGTGGCTGTG
GCGCGCGCTCGACGGAGAGGGTGA
back to top