mRNA_A-nodosum_M_contig10.106.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10.106.1
Unique NamemRNA_A-nodosum_M_contig10.106.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10contigA-nodosum_M_contig10:1045505..1046729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size158
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866347.0400562-CDS-A-nodosum_M_contig10:1045504..10455841680866347.0400562-CDS-A-nodosum_M_contig10:1045504..1045584Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1045505..1045584 +
1680866347.0498707-CDS-A-nodosum_M_contig10:1046651..10467271680866347.0498707-CDS-A-nodosum_M_contig10:1046651..1046727Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1046652..1046727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10.106.1prot_A-nodosum_M_contig10.106.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10 1045505..1046727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10.106.1

>prot_A-nodosum_M_contig10.106.1 ID=prot_A-nodosum_M_contig10.106.1|Name=mRNA_A-nodosum_M_contig10.106.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp
DAVYGFVIGGAMKAVGVSMSSFAGRTRPRKILGRRSSSTSMVTGADMLDC
AT
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mRNA from alignment at A-nodosum_M_contig10:1045505..1046729+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10.106.1 ID=mRNA_A-nodosum_M_contig10.106.1|Name=mRNA_A-nodosum_M_contig10.106.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1225bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1045505..1046729+ (Ascophyllum nodosum dioecious)
GATGCAGTGTATGGCTTCGTAATCGGAGGTGCTATGAAGGCTGTGGGCGT
CAGCATGAGTTCGTTCGCGGGTAGGACGAGGTGAGGTTTTGCGGTCACTT
CATCCTCAAACAGTTGTCCTCTCGCGATATAGTCTACCCACGTTACTCAC
TATGTCATACGAAGAGTCTATGCTGAATTGTCCATGTCACCGCCACAAGT
CGATGTACGTACAGCATAGGGCTCCTCCTCGTGTGGAGGATCATGCCATG
CCATGCCATGCCATGATGCGCCCTATCTTCGGGTACATTCCGATTTGATG
AAGTAACCGCGATGGCTTTTCATCCCCGAAGTGAATGACACAGACAGTTG
TAGTAAGAGAGACGCGGAAGAGGCGGACAAGGTTGAGGTTGCACCTGGTG
TGACTGTAGCAAGCTTAAGACGTTTTCGAACCGCGTTGATTGGGCCAACC
CAAGGACTCCCTAAGCGACGTCGATTGTGCCATTAGTGAAACTGAGACCC
TTAGAGTACGGAATGTGGTAGATGCTACGCGTTTTTTTTTTTTTTTTTTT
TTTTGGGTGCATGGTTGCGAGCCGGGGAGGGTATCAGATGGCTCGCGGCC
GGCACTATGCCAAACTCTCTCTATCGAATGCCGCTCGTTTATCTTTCTCT
GACCTGTGTATTTTGTTATTCATGTTCCTTTCTCTTTGTCGTTTGTGTGT
TTGTGTTTTTCTTTGCTCTCATTGGAGCTTGGTAGATGTTCCTCTGATAT
TTTTCTGTCCAGCAGACCACGTACCGGATTGGCAACCACGTGTATTATTG
GGTATGGTTGAGGCCCGATCGGTTAATGTGAAGAAAACAACAACAACAAC
AGTATTCTTTCATGCGATGAAGGCATCATGTCATGTGATTTCATCCGACC
GCTTACGATTGTGAGCACTGCGTCGGCGATCGCGTGTAGTCTAACGAATG
AAGTGTGATGCGTCGGCCGTCTTGCATCGGAGAGTGCTGCGGAGAAGCTC
CCGAGGAGGTGTTGTGACAGAGTACTGTACATTGCAGCGGCAAGTCGCGC
CCCTACGAACCTCCACGAGGTTGGTTCATGTTTCGTGCTCCCCTGCGGTC
AAATCAAATCCTTGCCGGTTCCTGGGCATGGTATGAGCGACGCCCAGACC
GAGGAAGATCCTCGGGAGACGCAGCAGCAGCACCTCCATGGTCACTGGCG
CGGATATGCTTGATTGCGCAACCGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10:1045505..1046729+

>mRNA_A-nodosum_M_contig10.106.1 ID=mRNA_A-nodosum_M_contig10.106.1|Name=mRNA_A-nodosum_M_contig10.106.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=156bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1045505..1046729+ (Ascophyllum nodosum dioecious)
GATGCAGTGTATGGCTTCGTAATCGGAGGTGCTATGAAGGCTGTGGGCGT
CAGCATGAGTTCGTTCGCGGGTAGGACGAGACCGAGGAAGATCCTCGGGA
GACGCAGCAGCAGCACCTCCATGGTCACTGGCGCGGATATGCTTGATTGC
GCAACC
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