mRNA_A-nodosum_M_contig1041.17.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1041.17.2
Unique NamemRNA_A-nodosum_M_contig1041.17.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1041.17.2 vs. uniprot
Match: D7G2N4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2N4_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 1.340e-66
Identity = 117/184 (63.59%), Postives = 144/184 (78.26%), Query Frame = 1
Query:  451 TTNNGRPGGREDELIALQIRKLAQQKELANEFNDILTREGGLNEHTRQTCKNLEYAIAIATRPGAIDYYRAPEEIERIVKNGDLVALTSRIARVQQDIDQVKKDIQQA----ADLSAKARAQ-NPKPACSSFAEWSTFYGEPNPPKFGGVLTTFEKNAKIYGGTNHHRAFKTQATVMKKGFLTR 987
            +T+N +   R+DEL AL++RKL QQ+ELA EFN ILTR+GGLN+  RQTCKNLEYAIAIATRPG I+YYR  EE  RIV NG+L  LT++IAR+Q+DIDQV++DIQQA    +  +A A+AQ + +P CSS AEW   YGEP P    G++T FE++ KIYGGTNHHRAFKTQATVMKKG +TR
Sbjct:    4 STSNHQGSRRQDELTALKVRKLGQQEELAKEFNFILTRQGGLNDQARQTCKNLEYAIAIATRPGQIEYYRPSEEAARIVANGELTVLTNKIARLQRDIDQVEQDIQQADVVASSTAAAAQAQPSARPPCSSLAEWFAAYGEPAPSASSGLMTNFEESPKIYGGTNHHRAFKTQATVMKKGRITR 187          
BLAST of mRNA_A-nodosum_M_contig1041.17.2 vs. uniprot
Match: A0A7S2UW48_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW48_9STRA)

HSP 1 Score: 162 bits (411), Expect = 3.300e-43
Identity = 80/164 (48.78%), Postives = 115/164 (70.12%), Query Frame = 1
Query:  484 DELIALQIRKLAQQKELANEFNDILTREGGLNEHTRQTCKNLEYAIAIATRPGAIDYYRAPEEIERIVKNGDLVALTSRIARVQQDIDQVKKDIQQAADLSAKARAQNPKPACSSFAEWSTFYGEPNPPKFGGVLTTFEKNAKIYGGTNHHRAFKTQATVMKKG 975
            ++L   +  KLAQQK L++EFN+ILTREGGLNE +RQ CKNLE A+A+A RPG  +YY+AP E++RI+   DL  LT++I ++Q+++DQ+  +I+Q   LS +  +Q   P  ++  +W   YG P PP   G L+ FE + K+YGGT HHRAFK+Q+  +KKG
Sbjct:   24 EQLYEQKASKLAQQKNLSDEFNEILTREGGLNEVSRQACKNLEAAVAVAQRPGYFEYYQAPAEVQRIIAADDLKLLTNKINQIQRELDQIDSEIEQ---LSKQHYSQRNPPQVNNLGQWFAVYGTPKPPP-NGTLSVFEPSDKVYGGTQHHRAFKSQSRSLKKG 183          
BLAST of mRNA_A-nodosum_M_contig1041.17.2 vs. uniprot
Match: A0A7S2SKE1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKE1_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.180e-36
Identity = 76/175 (43.43%), Postives = 108/175 (61.71%), Query Frame = 1
Query:  472 GGREDELIALQIRKLAQQKELANEFNDILTREGGLNEHTRQTCKNLEYAIAIATRPGAIDYYRAPEEIERIVKNGDLVALTSRIARVQQDIDQVKKDIQQAADLSAKARAQNPKPACS---SFAEWSTFYGEPNPPKFGGVLTTFEKNAKIYGGTNHHRAFKTQATVMKKGFLTR 987
            GG  D L+A ++ KL QQK + +E N ILTRE GLN+ + +T +NLE A+ ++ +PG  +Y++AP E++  V+N DLV LT ++ R+Q +IDQ+  +I+        A      PA     S  +W   +G P  P   G  +TF+   KIYGGTNHHRAFKTQ+  MK+G LTR
Sbjct:   22 GGTVDGLLAAKVAKLDQQKRVTDEMNAILTRENGLNDTSHKTMRNLEVAVVVSKQPGFFEYFQAPSEVQAAVRNNDLVQLTKKVKRIQSEIDQIDAEIEHLRSKQTPAA-----PALGEMRSLKQWLAHHGAPKQPP-SGYFSTFQDAPKIYGGTNHHRAFKTQSMTMKRGRLTR 190          
BLAST of mRNA_A-nodosum_M_contig1041.17.2 vs. uniprot
Match: A0A3R6VT06_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VT06_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.920e-32
Identity = 75/175 (42.86%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  472 GGREDELIALQIRK---LAQQKELANEFNDILTREGGLNEHTRQTCKNLEYAIAIATRPGAIDYYRAPEEIERIVKNGDLVALTSRIARVQQDIDQVKKDIQQAADLSAKARAQNPKPACSSFAEWSTFYGEPNPPKFGGVLTTFEKNAKIYGGTNHHRAFKTQATVMKKGFLTR 987
            GG ED    LQ +K   L  Q+E A+ FN +L+  GGLNE +R+ CKNLE AI  + +PG   Y+  P+ ++ +VKNG+L  L + I ++QQ ID V  +I   A  +A   A   +    S  +W + YG P P    G+LT F  N K+YGGT H+ AFKTQ+T MKKG +T+
Sbjct:    4 GGMED----LQKKKEELLHAQREKADRFNALLSGPGGLNETSRKVCKNLEAAITASKKPGYFMYFEQPDVVKAVVKNGELRKLQTAIVQIQQKIDLVDAEITNNARANATTTASGRESEIQSLKQWLSTYGTPKPVS-SGILTCFSANPKVYGGTEHYSAFKTQSTTMKKGRITK 173          
BLAST of mRNA_A-nodosum_M_contig1041.17.2 vs. uniprot
Match: A0A1V9ZEM2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEM2_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.570e-31
Identity = 72/168 (42.86%), Postives = 104/168 (61.90%), Query Frame = 1
Query:  484 DELIALQIRKLAQQKELANEFNDILTREGGLNEHTRQTCKNLEYAIAIATRPGAIDYYRAPEEIERIVKNGDLVALTSRIARVQQDIDQVKKDIQQAADLSAKARAQNPKPACSSFAEWSTFYGEPNPPKFGGVLTTFEKNAKIYGGTNHHRAFKTQATVMKKGFLTR 987
            DEL A +   L  Q+E A+ F+++L   GGLNE +R+TCKNLE AI  + +PG   YY  P+ ++ +VKNG+L  L   I ++QQ IDQ+  ++   A+ +AKA A        S  +W + YG P P    G+LT+F  + K+YGGT H+ AFK+Q+  MKKG LT+
Sbjct:    2 DELRAKKAELLLAQQEKADRFHELLVGPGGLNEASRKTCKNLEAAITASKKPGYFLYYEQPDVVKAVVKNGELRKLQGVIVQLQQKIDQIDAEL---ANHAAKAAAAPVTNEVQSLKQWFSTYGTPKPVT-SGMLTSFATDPKVYGGTEHYSAFKSQSLTMKKGRLTK 165          
BLAST of mRNA_A-nodosum_M_contig1041.17.2 vs. uniprot
Match: A0A6G0X4V5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4V5_9STRA)

HSP 1 Score: 128 bits (322), Expect = 6.150e-31
Identity = 69/158 (43.67%), Postives = 97/158 (61.39%), Query Frame = 1
Query:  514 LAQQKELANEFNDILTREGGLNEHTRQTCKNLEYAIAIATRPGAIDYYRAPEEIERIVKNGDLVALTSRIARVQQDIDQVKKDIQQAADLSAKARAQNPKPACSSFAEWSTFYGEPNPPKFGGVLTTFEKNAKIYGGTNHHRAFKTQATVMKKGFLTR 987
            L  Q++ A++F+ IL+  GGLNE +R+TCKNLE AI+ + +PG   Y+  PE ++ I+KNG+L  L + I ++ Q I+QV  +I           A        +F +W T YG P P    GVLT+F  N K+YGGT H+ AFKTQ+T MKKG LT+
Sbjct:   12 LHAQRDKADKFHAILSGPGGLNETSRKTCKNLEAAISASKKPGYFSYFDQPEVVKAIIKNGELRKLQTAILQLHQKIEQVDVEIANHTKAGNVPGAAGTASDIQTFKQWFTTYGTPKPVT-SGVLTSFSANPKVYGGTEHYSAFKTQSTTMKKGRLTK 168          
BLAST of mRNA_A-nodosum_M_contig1041.17.2 vs. uniprot
Match: A0A067CQ53_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQ53_SAPPC)

HSP 1 Score: 126 bits (317), Expect = 2.460e-30
Identity = 78/168 (46.43%), Postives = 106/168 (63.10%), Query Frame = 1
Query:  496 ALQIRK---LAQQKELANEFNDILTREGGLNEHTRQTCKNLEYAIAIATRPGAIDYYRAPEEIERIVKNGDLVALTSRIARVQQDIDQVKKDIQ-QAADLSAKARAQNPKPACSSFAEWSTFYGEPNPPKFGGVLTTFEKNAKIYGGTNHHRAFKTQATVMKKGFLTR 987
            AL+ +K   L  QKE A+ F+++LT   GLNE +R+TCKNLE AI  + +PG   YY  P+  + IVKNG+L  L S I ++QQ IDQV  +I+ QAA  SA A A+       +  +W + YG P P    GVLT+F  + K+YGGT H+ AFK+Q+  MKKG LT+
Sbjct:    3 ALRAKKEELLFAQKERADRFHELLT---GLNEASRKTCKNLEAAITASKKPGYFLYYEQPDVAKAIVKNGELRKLQSAIVQLQQKIDQVDAEIEVQAAKSSAPAPAE-----VQTLKQWFSTYGTPKPVT-SGVLTSFAADPKVYGGTEHYSAFKSQSLTMKKGRLTK 161          
BLAST of mRNA_A-nodosum_M_contig1041.17.2 vs. uniprot
Match: A0A485KK74_9STRA (Aste57867_8395 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK74_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.040e-29
Identity = 67/158 (42.41%), Postives = 97/158 (61.39%), Query Frame = 1
Query:  514 LAQQKELANEFNDILTREGGLNEHTRQTCKNLEYAIAIATRPGAIDYYRAPEEIERIVKNGDLVALTSRIARVQQDIDQVKKDIQQAADLSAKARAQNPKPACSSFAEWSTFYGEPNPPKFGGVLTTFEKNAKIYGGTNHHRAFKTQATVMKKGFLTR 987
            L  Q+E A++FN++L   GGLNE +R+TCKNLE AI+ + +PG   YY  P+  + IVKNG+L  + + +  +QQ I+QV  +I+      A       +    +  +W   YG P P    G+LT+F  NAK+YGGT H+ AFK+Q+T MKKG LT+
Sbjct:   23 LHAQREKADKFNEVLNAPGGLNEVSRKTCKNLEAAISASKKPGYFMYYEQPDVAKAIVKNGELKKIHAAVMLLQQKIEQVDVEIENQKKTLASGVGGG-ESEIQNLKQWLATYGAPKPVS-SGMLTSFNSNAKVYGGTEHYSAFKSQSTTMKKGRLTK 178          
BLAST of mRNA_A-nodosum_M_contig1041.17.2 vs. uniprot
Match: A0A7S2FSZ0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FSZ0_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.290e-29
Identity = 67/167 (40.12%), Postives = 99/167 (59.28%), Query Frame = 1
Query:  493 IALQIRKLAQQKELANEFNDILTREG--GLNEHTRQTCKNLEYAIAIATRPGAIDYYRAPEEIERIVKNGDLVALTSRIARVQQDIDQVKKDIQQAADLSAKARAQNPKPACSSFAEWSTFYGEPNPPKFGGVLTTFEKNAKIYGGTNHHRAFKTQATVMKKGFLTR 987
            +  ++ KL +QK +A+E N++LTR G  GLNE +R+T KNLE A+ ++ RPG  +YY+   E+E I KNG++  L  ++ R+  +I Q+  + Q   +   K    +  P  +S A+W+  YG    P   G  + F    KIYGGT HHRAFKTQ+  MK+G L R
Sbjct:    7 VRAKMAKLKEQKRVADEINELLTRPGEDGLNESSRKTMKNLEVAVVVSKRPGFFEYYKPAPEVEAIQKNGEIQHLVKKLNRLGGEIAQLDAESQNI-EAMRKPLKMSSGPELTSLAQWNARYGTVEKPVPSGFYSGFNDAPKIYGGTEHHRAFKTQSRTMKRGRLIR 172          
BLAST of mRNA_A-nodosum_M_contig1041.17.2 vs. uniprot
Match: A0A812TWU8_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TWU8_SYMMI)

HSP 1 Score: 123 bits (309), Expect = 4.810e-29
Identity = 66/168 (39.29%), Postives = 104/168 (61.90%), Query Frame = 1
Query:  502 QIRKLAQQKELANEFNDILTREGGLNEHTRQTCKNLEYAIAIATRPGAIDYYRAPEEIERIVKNGDLVALTSRIARVQQDIDQVKKDIQQAADLSAKARAQNPKP-----ACSSFAEWSTFYGEP-NPPKFGGVLTTFEKNAKIYGGTNHHRAFKTQATVMKKGFLTR 987
            +++KL +QK L++  N++LT++GGLN++++   KNL  AIA+A +PG  +YY  P E+  I  +  L +L   + +V ++IDQ+  +I       A    + P+P     + +S ++W   YG P N       +TTF+ + KIYGGTNHHRAFKTQA+ MKKG +T+
Sbjct:   16 KVQKLNEQKALSDRMNELLTKKGGLNDNSKNVRKNLSAAIAVAKQPGYFEYYETPSEVREIEDSKILSSLVKSLGKVHREIDQINSEI-------AHHHQKGPEPPKAESSLTSMSQWFETYGRPENTHCLEERMTTFQPSPKIYGGTNHHRAFKTQASNMKKGRVTK 176          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1041.17.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G2N4_ECTSI1.340e-6663.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UW48_9STRA3.300e-4348.78Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2SKE1_9STRA1.180e-3643.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A3R6VT06_9STRA2.920e-3242.86Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A1V9ZEM2_9STRA1.570e-3142.86Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0X4V5_9STRA6.150e-3143.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067CQ53_SAPPC2.460e-3046.43Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485KK74_9STRA1.040e-2942.41Aste57867_8395 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S2FSZ0_9STRA4.290e-2940.12Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A812TWU8_SYMMI4.810e-2939.29Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1041contigA-nodosum_M_contig1041:156332..159741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G2N4
Model size1833
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue7.61e-73
EggNOG OGs2C2XI@1|root,2S2SM@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_002870.1
Cds size588
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1041.17.2prot_A-nodosum_M_contig1041.17.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1041 156734..158898 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866414.0235682-UTR-A-nodosum_M_contig1041:156331..1567331680866414.0235682-UTR-A-nodosum_M_contig1041:156331..156733Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1041 156332..156733 +
1680866414.0851448-UTR-A-nodosum_M_contig1041:158898..1597411680866414.0851448-UTR-A-nodosum_M_contig1041:158898..159741Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1041 158899..159741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866414.0352216-CDS-A-nodosum_M_contig1041:156733..1568981680866414.0352216-CDS-A-nodosum_M_contig1041:156733..156898Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1041 156734..156898 +
1680866414.0472124-CDS-A-nodosum_M_contig1041:157518..1577011680866414.0472124-CDS-A-nodosum_M_contig1041:157518..157701Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1041 157519..157701 +
1680866414.0600846-CDS-A-nodosum_M_contig1041:158149..1583391680866414.0600846-CDS-A-nodosum_M_contig1041:158149..158339Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1041 158150..158339 +
1680866414.0707543-CDS-A-nodosum_M_contig1041:158848..1588981680866414.0707543-CDS-A-nodosum_M_contig1041:158848..158898Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1041 158849..158898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1041.17.2

>prot_A-nodosum_M_contig1041.17.2 ID=prot_A-nodosum_M_contig1041.17.2|Name=mRNA_A-nodosum_M_contig1041.17.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=196bp
MPNLFASTRSAMELVDTTNNGRPGGREDELIALQIRKLAQQKELANEFND
ILTREGGLNEHTRQTCKNLEYAIAIATRPGAIDYYRAPEEIERIVKNGDL
VALTSRIARVQQDIDQVKKDIQQAADLSAKARAQNPKPACSSFAEWSTFY
GEPNPPKFGGVLTTFEKNAKIYGGTNHHRAFKTQATVMKKGFLTR*
back to top

mRNA from alignment at A-nodosum_M_contig1041:156332..159741+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1041.17.2 ID=mRNA_A-nodosum_M_contig1041.17.2|Name=mRNA_A-nodosum_M_contig1041.17.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3410bp|location=Sequence derived from alignment at A-nodosum_M_contig1041:156332..159741+ (Ascophyllum nodosum dioecious)
TGCAAGTGATATTTCGTATGGTGACATTGAGCCTTGAGCACAGCAGTAGA TTGCATTATACCGCGTTTCGTTCCTCCCAGGTGTGTATACTTTCACCCTT TTGGTTAATTCTTCTCGTCGTCGAGAATTTACCCTCCTCCGTCTGCAGCG AGTCTACTCATACATGAAGGAAGTCTCTTGCTATGGGTGACTAAGCCTTG TAACTAAGCTTGCGCTGACATTTGGCTTAGGCGAAGGCTCGAGGAAAGAA CAAAGACTCCGTGGAGATGCATGGATGCCCTTCTCGAGGGCTTGGACCTG GGAGTAACTCGTAATGACGGTTTTCTGTAGCCCACTGGGTACCGTTGAGC ACGGGAACAAACGGTCCAACGCCTAAGCGAGTTGTGCGATTCACCCCTAG GAATGCCTAATTTATTTGCTTCCACCCGATCAGCGATGGAGCTCGTGGAC ACGACGAACAATGGAAGGCCAGGCGGAAGAGAGGACGAGCTCATAGCTCT TCAGATCCGCAAACTCGCGCAGCAAAAAGAACTTGCCAACGAGTTCAACG ATATCCTAACACGTGAGGTGCGAGGGTAGGTGAGTGGTTAAATTTATTCA ACGCAAATATGTTCCGTGTGGCTGTGAAGTTTCTACTCGGTACTTTATTT GTATAGATTAGAGATTTGTGAAAATATGACAAACCAACCCTAAATCCCTG ATATCGCTATGGAGCTAACCATCGCCGTATCAATGACGCCCAAAGGCACA TAAACATGAGTAGTGAGGTCTCTGCCCGAAAATCGAGCTGTCACTTTATT GGGGCCCCTTCATTATATGCTAACCACGTATCCGTACTGTCTAGCTATAC CTTTTACTTGTCACGTCAATAATCTCAACGTGTGAGCTGGTACGCACAAA GTACTTATCCGCCTATCAGCCCGCACCTATACTAATAATAACAGAAAACT TTGAACACATCGAAACGTTTCAAGCATTCCACACCGTTCGGGCAAATGAG TTCAAAACCTATAAGCGGGCATATTGACTGTAAGTAGTGTTATGATGCGT AGATCCTTAATCGACTACCTTTCGAGTACTCATTGAGCGCTTGAGTTTGA AGTGAGAGTACAAGTGTGGAATGTGCCAAATAGAGCTTTCTGTTTTGATC TGAATATCTTCTCCTCACACCCTTATCTCTTCTTCAGGGAGGCTTAAATG AACACACGCGCCAGACTTGCAAGAACCTCGAGTACGCCATCGCCATCGCA ACTCGGCCTGGTGCTATAGATTACTACCGAGCGCCGGAGGAAATTGAGCG CATCGTCAAGAACGGCGATCTAGTGGCACTCACGAGCAGGATAGCGCGTG TGCAGCAAGATATAGATCAGGTGCTTTGAGACTCACTCAGCTCTTGCAAA TATAGGCAACCAAAGCGAAACAAGAGTGTTTCTACGAGAGCCCCCCCCCA AACCGTCGCTTGCACGAACCAGAAAATAAAGAATATTTACCGCTACGGGG TCGAATTGAAAAAAAAAAAACATGATAGACTTGCATTTACAATGACATCC ACATGGACAGATCAGGCCAGCAAAAAAAATAAGAATGAGGGAGAAGTTAT CTGATTAGATTTTTGATGTACCGCGTAAGCTTTTCGTAGGGCGTTTGCCG CAAGCGCCCGAACTAGTATTTTCCGACAAGCTTGGCGAGGGGTTCAACAA TGGATTTGTGATTGTGCTGAAAAGTTGTCGAAATAGATGCCCGAACATAC TTTACGGATGGTGTAAGATGGCATATGATCCTGACATACGCCATCGCTAA AACTTCCACGATCGAAAGGTAAAAAAGGACATCCAACAGGCTGCTGATCT CTCTGCGAAAGCTCGCGCCCAGAACCCGAAACCTGCGTGTTCAAGCTTTG CAGAGTGGTCCACGTTCTACGGCGAGCCGAATCCACCAAAGTTTGGCGGA GTTCTCACTACTTTCGAGAAAAACGCCAAGATCTACGGAGGGACCAACCA TCATAGAGGTAAGGCGTCTGCACCGTTATCGCGGTGAGCGCCCTCCTCCT TGTTTTCTCCGCAGCCCCTTCATCCTGATCGCTAAGCGGAGAACTCTTGC TGTTTGCATCGCTGATTTTGCATCAGCTGGGGACAAAAGGGCTGAGCATC GAATTTGCTTTGTGATATGTTTCCTACGTCTCGGCTCTAAAACAAAAACA CATTGATACATGTATGGTGTGTTTCTCGAAGAGCTCAGGGTGGCTTACGC TGTACCAGATAAACAGAAATAACAAGGGATGAACCCTCGTCCAGACCTTA TTAACCTTGCTTACGCCTTACCTGGCATGTGAGAGCACACCTCAGGGACT GGATTTTGGTCGGTGCCCACTGCTGCCTAGTTGTCGAGAAAACAAGGTGA AGGTACATCCCTCGCCGAGGGAGCTGTATTTCCCCGCCTACGGTAACTCC TGCGGAACCACCTGTTCCAACTCAATTACTCTCTCCTTCTCCTCTCTTTC TTTGATTCAACAATCAGCCTTCAAGACACAAGCGACAGTGATGAAGAAAG GCTTTCTCACGCGGTAGGTTCTACGCGGAATGGGGCGCCGCCATCTACAG TACGGACCCTTGATGTTGAAAGTTGGTACGTGTGATAGACGACGTGGACG GATAACTAACTTACCGGTGTAGCACTCAGAGTGTGGCGAAGTTCTGTGAT ATTCGTCCGTTGACTCGTGGTGCTAAATAGGTAAAGTAGGTTGTTGTAGT GCGTGTAGCCTAAACGCCGTTTTACAGCACTTGCAAGCACGTAAGGATCC AAGAGGACGACCGCACAGTGGAGTGTAGGGTGGTTCCTTCCCCGTGAGCT GCACAGTCAAGAAACCCTTTTCTCGACGTATGACGGACCGTGGGTAGCGT TGGAGGACGTGATCACTTTCGAGACGGTGGGCGGGGCTGATTGTTGGATA ATGCCCTAATCACACTAGTTTATGAATTAGTTCCAGTCAACGTTGATTGG GTATGCCGACAAGACCAATACTTTGTGATTCTGTCCGGAAAATACTTTCA CCTGAGCTTGAGTTCGAGCTCATGAAAACAACCTTACTTTTTGATCTTTA CTGTCTGAAAAGTCGGAAGACTCTAGAGTTGCAGGCCCAAAGTATAGCCC ACTCACTTGAGAAGCGGACATCAGCTGTAAGATGACTTGTCAGACGGAGG CGCTGATGACAGGAAAAATCAACCCTCCTCGTATATTATTACTGCTTAGT AAATTGTATTACGGCTTCCAGACAAGAGGGTCCATTCAAATCCCAGTTGT AACTTATGTTATTTGCGCATTCCCCTTGCAGGCATGCAAGAGTAGTTGCC ATAACAGGATAACGATTAGCCAGGTCACGGAAGATGTAAAACAATAATGT GATACCTGGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1041:156332..159741+

>mRNA_A-nodosum_M_contig1041.17.2 ID=mRNA_A-nodosum_M_contig1041.17.2|Name=mRNA_A-nodosum_M_contig1041.17.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at A-nodosum_M_contig1041:156332..159741+ (Ascophyllum nodosum dioecious)
ATGCCTAATTTATTTGCTTCCACCCGATCAGCGATGGAGCTCGTGGACAC
GACGAACAATGGAAGGCCAGGCGGAAGAGAGGACGAGCTCATAGCTCTTC
AGATCCGCAAACTCGCGCAGCAAAAAGAACTTGCCAACGAGTTCAACGAT
ATCCTAACACGTGAGGGAGGCTTAAATGAACACACGCGCCAGACTTGCAA
GAACCTCGAGTACGCCATCGCCATCGCAACTCGGCCTGGTGCTATAGATT
ACTACCGAGCGCCGGAGGAAATTGAGCGCATCGTCAAGAACGGCGATCTA
GTGGCACTCACGAGCAGGATAGCGCGTGTGCAGCAAGATATAGATCAGGT
AAAAAAGGACATCCAACAGGCTGCTGATCTCTCTGCGAAAGCTCGCGCCC
AGAACCCGAAACCTGCGTGTTCAAGCTTTGCAGAGTGGTCCACGTTCTAC
GGCGAGCCGAATCCACCAAAGTTTGGCGGAGTTCTCACTACTTTCGAGAA
AAACGCCAAGATCTACGGAGGGACCAACCATCATAGAGCCTTCAAGACAC
AAGCGACAGTGATGAAGAAAGGCTTTCTCACGCGGTAG
back to top