mRNA_A-nodosum_M_contig104.79.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig104.79.1 vs. uniprot
Match: D7G590_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G590_ECTSI) HSP 1 Score: 213 bits (542), Expect = 4.100e-63 Identity = 116/164 (70.73%), Postives = 128/164 (78.05%), Query Frame = 3
Query: 399 ASSFMLA-APGLAATANVQH-GAAVSGFTGYNSVEQRETVVDRSMLQMIRHGRRVKKLGLPADQRKALLRGLTXXXXXXXXXXTTLARAKAVRKNVDHMITLSKNGSLHARRQAMGYIYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 884
ASSFM+ G AAT Q GAAVSGFTG N V QR+ DRS L+M+RH + KKL LPADQRKALLRGLT TT+ RAKAVRK+VDHMITLSKNGSLHARRQAMGYIYDK+LVHALFESGAERYG+R GGY R++ T PRKGDNAKMA+IELV
Sbjct: 18 ASSFMIGPGGGAAATIRAQRQGAAVSGFTGCNPVCQRDATTDRSALRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKHVDHMITLSKNGSLHARRQAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 181
BLAST of mRNA_A-nodosum_M_contig104.79.1 vs. uniprot
Match: A0A836CL42_9STRA (Ribosomal protein L17 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL42_9STRA) HSP 1 Score: 178 bits (452), Expect = 4.580e-50 Identity = 95/142 (66.90%), Postives = 106/142 (74.65%), Query Frame = 3
Query: 459 AAVSGFTGYNSVEQRETVVDRSMLQMIRHGRRVKKLGLPADQRKALLRGLTXXXXXXXXXXTTLARAKAVRKNVDHMITLSKNGSLHARRQAMGYIYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 884
A VS F G +V R VV LQM+RH +RV KLG PADQRKALLR LT TTL RA+AVRK VDHMI L K+GSLH+RRQAMG++YDK LVHALFE ERYG+RNGGYCRVL TMPR+GDNAKMA+IELV
Sbjct: 25 ARVSSFQGA-AVASRNVVVAEGGLQMMRHMKRVAKLGKPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKFVDHMIQLGKDGSLHSRRQAMGFMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQGDNAKMAIIELV 165
BLAST of mRNA_A-nodosum_M_contig104.79.1 vs. uniprot
Match: Q5K251_GUITH (50S ribosomal protein L17 n=2 Tax=Guillardia theta TaxID=55529 RepID=Q5K251_GUITH) HSP 1 Score: 171 bits (432), Expect = 2.900e-47 Identity = 85/121 (70.25%), Postives = 97/121 (80.17%), Query Frame = 3
Query: 522 SMLQMIRHGRRVKKLGLPADQRKALLRGLTXXXXXXXXXXTTLARAKAVRKNVDHMITLSKNGSLHARRQAMGYIYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 884
S L+M+RHG+RV KLGLP DQRKALLR LT TTLARAKAVR VD MITL+K+GSL ARRQAMG++YDK+LVHALFE ERY +RNGGYCRVL T+PRKGDN+KM +IELV
Sbjct: 36 SSLEMMRHGKRVAKLGLPQDQRKALLRSLTTEVIRHGRITTTLARAKAVRSEVDKMITLAKDGSLSARRQAMGWMYDKQLVHALFEQAPERYSERNGGYCRVLQTLPRKGDNSKMGIIELV 156
BLAST of mRNA_A-nodosum_M_contig104.79.1 vs. uniprot
Match: A0A7S1DX23_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1DX23_9STRA) HSP 1 Score: 171 bits (433), Expect = 4.410e-47 Identity = 91/144 (63.19%), Postives = 104/144 (72.22%), Query Frame = 3
Query: 468 SGFTGYNSVEQRE---TVVDR--SMLQMIRHGRRVKKLGLPADQRKALLRGLTXXXXXXXXXXTTLARAKAVRKNVDHMITLSKNGSLHARRQAMGYIYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 884
S FTGY ++ T + R S L M+RH + KKLG PADQRKALLR LT TTL RA+AVRK+VDHMITL K G LHARRQAM ++YDK LVHALF++ ERYGDRNGGY RVL T+PR+GDNAKMAVIELV
Sbjct: 37 SAFTGYGMATLQQAPPTTISRTKSNLDMMRHRKGFKKLGKPADQRKALLRALTTEIIRHGRIKTTLVRARAVRKHVDHMITLGKRGDLHARRQAMSWVYDKNLVHALFDAAPERYGDRNGGYTRVLRTVPRQGDNAKMAVIELV 180
BLAST of mRNA_A-nodosum_M_contig104.79.1 vs. uniprot
Match: A0A7S2CVF2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVF2_9STRA) HSP 1 Score: 169 bits (427), Expect = 1.770e-46 Identity = 84/132 (63.64%), Postives = 98/132 (74.24%), Query Frame = 3
Query: 489 SVEQRETVVDRSMLQMIRHGRRVKKLGLPADQRKALLRGLTXXXXXXXXXXTTLARAKAVRKNVDHMITLSKNGSLHARRQAMGYIYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 884
S + R + R + M+RHG+R+ KLG PADQRKALLR LT TTL RAKA+R VD MI LSK+GSLH+RRQAM +IYDK+LVHALFE+ ERY DR GGYCRVL TMPR+GDNAKM +IELV
Sbjct: 29 SFQTRSPIATRGSISMMRHGKRMAKLGKPADQRKALLRSLTTEVIRHGRIKTTLVRAKAIRPCVDKMIQLSKDGSLHSRRQAMAFIYDKELVHALFENAPERYADREGGYCRVLRTMPRQGDNAKMGIIELV 160
BLAST of mRNA_A-nodosum_M_contig104.79.1 vs. uniprot
Match: A0A7S0CE24_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CE24_9STRA) HSP 1 Score: 169 bits (427), Expect = 2.340e-46 Identity = 83/122 (68.03%), Postives = 97/122 (79.51%), Query Frame = 3
Query: 519 RSMLQMIRHGRRVKKLGLPADQRKALLRGLTXXXXXXXXXXTTLARAKAVRKNVDHMITLSKNGSLHARRQAMGYIYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 884
R L M+RH +++ KLG PADQRKALLR LT TTL RAKAVRK+VDHMITL K+GSLH+RRQA+ ++YDK LVHALF++ +RYGDR GGYCRVL TMPR+GDNAKMAVIELV
Sbjct: 48 RGDLSMMRHRKKLAKLGKPADQRKALLRALTTEVIRHGRIKTTLIRAKAVRKHVDHMITLGKDGSLHSRRQALAWVYDKNLVHALFDAAPDRYGDREGGYCRVLRTMPRQGDNAKMAVIELV 169
BLAST of mRNA_A-nodosum_M_contig104.79.1 vs. uniprot
Match: A0A6V2NXL1_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2NXL1_9STRA) HSP 1 Score: 168 bits (425), Expect = 4.180e-46 Identity = 93/155 (60.00%), Postives = 107/155 (69.03%), Query Frame = 3
Query: 435 ATANVQHGAAVSGFTGYNSVEQRETVV-----DRSMLQMIRHGRRVKKLGLPADQRKALLRGLTXXXXXXXXXXTTLARAKAVRKNVDHMITLSKNGSLHARRQAMGYIYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 884
A AN ++S FTG + + VV RS L M+RH ++KKL PADQRKALLR LT TTL RAKAVRK+VDHMI L K G LHARRQA+G++YDK LVH+LFE+ ERY DRNGGY RVL TMPR+GDNAKMAVIELV
Sbjct: 12 AAANAFGVGSLSSFTGTSITLEPTYVVRGAPAGRSDLSMMRHRNKLKKLNKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQALGWVYDKDLVHSLFEAAPERYSDRNGGYTRVLRTMPRQGDNAKMAVIELV 166
BLAST of mRNA_A-nodosum_M_contig104.79.1 vs. uniprot
Match: K0TAZ9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TAZ9_THAOC) HSP 1 Score: 169 bits (428), Expect = 1.210e-45 Identity = 91/145 (62.76%), Postives = 102/145 (70.34%), Query Frame = 3
Query: 465 VSGFTGYNSVEQRETVV-----DRSMLQMIRHGRRVKKLGLPADQRKALLRGLTXXXXXXXXXXTTLARAKAVRKNVDHMITLSKNGSLHARRQAMGYIYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 884
VS FTG + E S L+M+RH +RV KLG PADQRKALLR LT TT RAKAVRK+VDHM+ L K G LHARRQA+G+IYDK LVHALFE+ ERYG+RNGGY RVL TMPR+GDNAKMAVIELV
Sbjct: 90 VSSFTGTHISTVMEPAARAHHSKSSSLEMMRHRKRVPKLGKPADQRKALLRALTTEIIRHGRIKTTAVRAKAVRKHVDHMVELGKRGDLHARRQALGWIYDKDLVHALFEAAPERYGERNGGYTRVLRTMPRQGDNAKMAVIELV 234
BLAST of mRNA_A-nodosum_M_contig104.79.1 vs. uniprot
Match: A0A7S4HPH3_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HPH3_9STRA) HSP 1 Score: 166 bits (421), Expect = 1.650e-45 Identity = 97/162 (59.88%), Postives = 113/162 (69.75%), Query Frame = 3
Query: 399 ASSFMLAAPGLAATANVQHGAAVSGFTGYNSVEQRETVVDRSMLQMIRHGRRVKKLGLPADQRKALLRGLTXXXXXXXXXXTTLARAKAVRKNVDHMITLSKNGSLHARRQAMGYIYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 884
AS+F + AP +A ++ GAAVS T RET D SM+ RH ++V KLG PADQRKALLR LT TTL RAKAVRK+VDHMI L K G LHARRQA+G++YDK LVH+LFE+ ERY DR GGY RVL TMPR+GDNAKMA+IELV
Sbjct: 14 ASAFGVGAPAFSAKSSFA-GAAVSEST----CVARETRGDMSMM---RHRKKVAKLGKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIQLGKRGDLHARRQALGWMYDKDLVHSLFEAAPERYSDREGGYTRVLRTMPRQGDNAKMAIIELV 167
BLAST of mRNA_A-nodosum_M_contig104.79.1 vs. uniprot
Match: A0A2V3IJG3_9FLOR (50S ribosomal protein L17, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJG3_9FLOR) HSP 1 Score: 167 bits (424), Expect = 1.890e-45 Identity = 84/116 (72.41%), Postives = 92/116 (79.31%), Query Frame = 3
Query: 537 IRHGRRVKKLGLPADQRKALLRGLTXXXXXXXXXXTTLARAKAVRKNVDHMITLSKNGSLHARRQAMGYIYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 884
IRHG+RV KL PADQRKALLR LT TT ARA+AVRK+ DHMITL+KNGSLHARRQA+GYIYDK+LVHALFE ERY DRNGGY RVL TMPR+GDNA M +IELV
Sbjct: 89 IRHGKRVPKLNKPADQRKALLRALTTELIRHGRIKTTHARAQAVRKHADHMITLAKNGSLHARRQALGYIYDKQLVHALFEQAPERYADRNGGYTRVLRTMPRRGDNAPMGIIELV 204 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig104.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig104.79.1 >prot_A-nodosum_M_contig104.79.1 ID=prot_A-nodosum_M_contig104.79.1|Name=mRNA_A-nodosum_M_contig104.79.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=207bp MRVLSMWDRAPKNRREQNCGELRRTLYYFLVQEVIFHLQWGPDPASSFMLback to top mRNA from alignment at A-nodosum_M_contig104:771156..774300- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig104.79.1 ID=mRNA_A-nodosum_M_contig104.79.1|Name=mRNA_A-nodosum_M_contig104.79.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3145bp|location=Sequence derived from alignment at A-nodosum_M_contig104:771156..774300- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig104:771156..774300- >mRNA_A-nodosum_M_contig104.79.1 ID=mRNA_A-nodosum_M_contig104.79.1|Name=mRNA_A-nodosum_M_contig104.79.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=621bp|location=Sequence derived from alignment at A-nodosum_M_contig104:771156..774300- (Ascophyllum nodosum dioecious)back to top |