prot_A-nodosum_M_contig9972.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9972.1.1
Unique Nameprot_A-nodosum_M_contig9972.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length76
Homology
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BLAST of mRNA_A-nodosum_M_contig9972.1.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.690e-12
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 0 
Query:    2 TNDASKMYCMRPPHFDQKEVITSNGTRLKVECVGNIDVIFHGRSDEPITMIDVSYVPDLKFNLFSFYKAQQTH 74
            T+D + +Y  RPP  ++  +   +G +LK EC G++DV+FH R D  +TM D++ VPDL F+L S    Q+TH
Sbjct:   27 TSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVIQETH 99
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BLAST of mRNA_A-nodosum_M_contig9972.1.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.850e-6
Identity = 26/75 (34.67%), Postives = 43/75 (57.33%), Query Frame = 0 
Query:    3 NDASKMYCMRPPHFDQKEVITSNGTRLKVECVGNIDVIFH-----GRSDEPITMIDVSYVPDLKFNLFSFYKAQQ 72
            + + +M+ +RP    ++ +   NGT L+V+CVG +++ FH     G  D  + M DV  VP + FNLFS +  Q+
Sbjct:  652 SSSHQMFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSLHHTQR 726
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9972.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE2.690e-1242.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3I1_9PHAE1.850e-634.67Integrase catalytic domain-containing protein n=5 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9972contigA-nodosum_M_contig9972:6243..6470 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9972.1.1mRNA_A-nodosum_M_contig9972.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9972 6243..6500 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9972.1.1 ID=prot_A-nodosum_M_contig9972.1.1|Name=mRNA_A-nodosum_M_contig9972.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=76bp
MTNDASKMYCMRPPHFDQKEVITSNGTRLKVECVGNIDVIFHGRSDEPIT
MIDVSYVPDLKFNLFSFYKAQQTHVI
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