prot_A-nodosum_M_contig972.6.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig972.6.1
Unique Nameprot_A-nodosum_M_contig972.6.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length383
Homology
BLAST of mRNA_A-nodosum_M_contig972.6.1 vs. uniprot
Match: A0A6H5KZ97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ97_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 8.310e-24
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 0
Query:  256 EAARQYVTDRLLDSHGLRLLKHGRNGRSSHRYLKSTDG-CRTITWGSENYDLKTMLEARKGTDDDPDFPGFKGTSNLRSAKSASATMDSSFSLVFSSRSLDFT 357
            E AR+Y+T RLL   G+RLLKHGRNG+S HR L+  D  C T+TWG   +DL+ M E R+GT+ DP  P + GTS LR +K+  A +D SFSL+F SRSLDFT
Sbjct:  233 ETARKYLTARLLSDEGVRLLKHGRNGKSMHRTLRCPDQECGTLTWGKTLHDLRLMQEVRRGTEVDPSEPNYTGTSELRRSKAGRAALDRSFSLLFPSRSLDFT 335          
BLAST of mRNA_A-nodosum_M_contig972.6.1 vs. uniprot
Match: D8LJL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJL6_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.150e-7
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0
Query:  256 EAARQYVTDRLLDSHGLRLLKHGRNGRSSHRYLKSTDG-CRTITWGSENYDLKTMLE 311
            E AR Y+T RLL   G+RLLKHGRNG+S HR L+  D  C T+TWG   +DL+ M E
Sbjct:  188 ENARAYLTARLLSDEGVRLLKHGRNGKSMHRTLRCPDQECGTLTWGKTLHDLRLMQE 244          
BLAST of mRNA_A-nodosum_M_contig972.6.1 vs. uniprot
Match: D7FVZ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ1_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 5.800e-7
Identity = 33/120 (27.50%), Postives = 62/120 (51.67%), Query Frame = 0
Query:  271 GLRLLKHGRNGRSSHRYLKSTDG-------------CRTITWGSENYDLKTMLEARKGTDDDPDFPGFKGTSNLRSAKSASATMDSSFSLVFSSRSLDFTAPNTEECDTLIQGFNSLSAK 377
            G  L+KH R+G++S+R + + D                 ++ G++ + L ++ + R GTD DP+     G++ LR        +   FSLV+ SR+LDF+  + +E   ++ GF ++ A+
Sbjct:   56 GFNLVKHSRSGKASNRVIYTVDNGVHFRMAKGKKGSLSKLSLGTQEFSLLSLAQVRMGTDKDPEHEDKTGSNPLRQGCPTEEDLRKGFSLVYLSRTLDFSCESEDEMHYIVNGFRAMVAE 175          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig972.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZ97_9PHAE8.310e-2456.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJL6_ECTSI1.150e-756.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVZ1_ECTSI5.800e-727.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 156..181
NoneNo IPR availableCOILSCoilCoilcoord: 187..207
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..232
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..74
IPR011993PH-like domain superfamilyGENE3D2.30.29.30coord: 266..381
e-value: 2.7E-11
score: 45.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig972contigA-nodosum_M_contig972:21259..55542 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig972.6.1mRNA_A-nodosum_M_contig972.6.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig972 18380..55830 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig972.6.1 ID=prot_A-nodosum_M_contig972.6.1|Name=mRNA_A-nodosum_M_contig972.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=383bp
MFSCCALFNTEDNDKDDLEHLKALEELEMEAAAPSNDKGVGPSALSFEGT
PATSSLGRSTSGTVEAQKYTTPYDFAPSSIPDGDEDPTSEATAAMEIAPQ
KPPAPSKGIEEGFFKSEGMEGEKMVAKGVMGEKVGASRMDKEDAGTAGSV
KAGETLRALRRAEDAARAAAAEAERRRFEEEASARAARKAESEARKALWR
AEEAQRLKQGGATSASAPPPPAEVKATRSPIYTNTVAKGQKVAPVASREE
AERAAEAARQYVTDRLLDSHGLRLLKHGRNGRSSHRYLKSTDGCRTITWG
SENYDLKTMLEARKGTDDDPDFPGFKGTSNLRSAKSASATMDSSFSLVFS
SRSLDFTAPNTEECDTLIQGFNSLSAKAQQGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011993PH-like_dom_sf