prot_A-nodosum_M_contig9708.2.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9708.2.1
Unique Nameprot_A-nodosum_M_contig9708.2.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length98
Homology
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: D8LTD5_ECTSI (Polyadenylate-binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD5_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 1.430e-53
Identity = 89/98 (90.82%), Postives = 96/98 (97.96%), Query Frame = 0 
Query:    1 MNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV 98
            MNFTTIKDQACRIMWSQRDPSLRRSGVGNIF+KNLD+TVD+KAL+DTFSLFGNILSCKVATD+ GESKGYGYVHYE GVSANMA+AK+NGMLIAGKQV
Sbjct:  103 MNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 200
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: A0A835YVH9_9STRA (Polyadenylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH9_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.620e-46
Identity = 76/98 (77.55%), Postives = 89/98 (90.82%), Query Frame = 0 
Query:    1 MNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV 98
            MNFT IKD  CRIMWSQRDPS+RRSGVGN+F+KNLD+T+D+KAL+DTFSLFGNILSCKVATD+ G SKGYGYVHYET  SAN A+AK++GM++ GKQV
Sbjct:  124 MNFTLIKDNPCRIMWSQRDPSMRRSGVGNVFVKNLDETIDNKALYDTFSLFGNILSCKVATDDAGNSKGYGYVHYETAESANEAIAKIDGMVVGGKQV 221
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: A0A6A5AH64_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AH64_9STRA)

HSP 1 Score: 155 bits (392), Expect = 7.040e-46
Identity = 72/98 (73.47%), Postives = 86/98 (87.76%), Query Frame = 0 
Query:    1 MNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV 98
            MN+T+IK   CRIMWSQRDP+LR+SGVGNIF+KNLD ++D+KAL+DTFSLFGNILSCKVA D NG SKGYGYVHYET  +A +A+ K+NGMLIAG +V
Sbjct:   96 MNYTSIKSVPCRIMWSQRDPTLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAYDLNGNSKGYGYVHYETAEAAYLAIEKINGMLIAGTEV 193
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: A0A2D4BDJ5_PYTIN (Polyadenylate-binding protein n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDJ5_PYTIN)

HSP 1 Score: 161 bits (407), Expect = 1.460e-44
Identity = 76/98 (77.55%), Postives = 87/98 (88.78%), Query Frame = 0 
Query:    1 MNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV 98
            MNFT+IK   CRIMWSQRDPSLR+SGVGNIF+KNLD ++D+KAL+DTFSLFGNILSCKVA D NG SKGYGYVHYET  +AN A+AK+NGMLIAG +V
Sbjct:   89 MNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDINGNSKGYGYVHYETAEAANEAIAKINGMLIAGTEV 186
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: A0A6V7IG58_9HYME (RRM domain-containing protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7IG58_9HYME)

HSP 1 Score: 147 bits (370), Expect = 5.360e-44
Identity = 66/97 (68.04%), Postives = 84/97 (86.60%), Query Frame = 0 
Query:    1 MNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQ 97
            MNF  +K +  RIMWSQRDPSLR+SGVGN+F+KNLD+++D+KA++DTFS FGNILSCKVA DE GESKGYG+VH+ET  +AN ++ KVNGML+ GK+
Sbjct:    7 MNFDIVKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDETGESKGYGFVHFETEEAANKSIDKVNGMLLNGKK 103
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: A0A293M762_ORNER (PolyA binding protein cytoplasmic 1 isoform 1 (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293M762_ORNER)

HSP 1 Score: 149 bits (376), Expect = 6.700e-44
Identity = 68/98 (69.39%), Postives = 86/98 (87.76%), Query Frame = 0 
Query:    1 MNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV 98
            MNF  IK++  RIMWSQRDPSLR+SGVGN+F+KNLDK++D+KA++DTFS FGNILSC+VA DE G SKGYG+VH+ET  +AN A++KVNGML+ GK+V
Sbjct:   64 MNFDPIKNKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVAIDEEGNSKGYGFVHFETEEAANNAISKVNGMLLNGKKV 161
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: A0A7S2K0X9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2K0X9_9DINO)

HSP 1 Score: 146 bits (368), Expect = 1.380e-43
Identity = 66/98 (67.35%), Postives = 85/98 (86.73%), Query Frame = 0 
Query:    1 MNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV 98
            +N+++IK +ACRIMWSQRDPSLR+SGVGNIF+KNLD+ +D+KAL+DTFSLFGNILSCKVA D+ G+S+GYG+VHYET  +A  ++ +VNGM I  K V
Sbjct:    3 LNYSSIKGRACRIMWSQRDPSLRKSGVGNIFVKNLDRNIDNKALYDTFSLFGNILSCKVACDQAGKSRGYGFVHYETEEAAKQSIERVNGMQIGDKTV 100
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: D2K9J5_ORNMO (Apoptosis-promoting RNA-binding protein (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=D2K9J5_ORNMO)

HSP 1 Score: 149 bits (376), Expect = 1.400e-43
Identity = 68/98 (69.39%), Postives = 86/98 (87.76%), Query Frame = 0 
Query:    1 MNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV 98
            MNF  IK++  RIMWSQRDPSLR+SGVGN+F+KNLDK++D+KA++DTFS FGNILSC+VATDE   SKGYG+VH+ET  +AN A++KVNGML+ GK+V
Sbjct:    5 MNFDPIKNKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFETEEAANNAISKVNGMLLNGKKV 102
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: A0A6T0CJI1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6T0CJI1_CHRCT)

HSP 1 Score: 154 bits (389), Expect = 3.520e-43
Identity = 71/98 (72.45%), Postives = 86/98 (87.76%), Query Frame = 0 
Query:    1 MNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV 98
            MN+T IK++ CRIMW  RDPSLR+SG GNIF+KNLDK++D+KAL+DTFS FGNILSCKVATD+NG SKGYG+VHYET  +ANMAV +VNGML+  K+V
Sbjct:   68 MNYTLIKNKPCRIMWCHRDPSLRKSGTGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVATDDNGGSKGYGFVHYETQDAANMAVTRVNGMLLNAKKV 165
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: A0A1B0F036_PHLPP (Uncharacterized protein n=1 Tax=Phlebotomus papatasi TaxID=29031 RepID=A0A1B0F036_PHLPP)

HSP 1 Score: 148 bits (374), Expect = 3.650e-43
Identity = 68/98 (69.39%), Postives = 84/98 (85.71%), Query Frame = 0 
Query:    1 MNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV 98
            MNF  +K +  RIMWSQRDPSLR+SGVGN+F+KNLDK++D+KA++DTFS FGNILSCKVA DE G SKGYG+VH+ET  SAN ++ KVNGML+ GK+V
Sbjct:   63 MNFDLLKSRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVAQDEKGSSKGYGFVHFETEESANTSIDKVNGMLLNGKKV 160
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTD5_ECTSI1.430e-5390.82Polyadenylate-binding protein n=2 Tax=Ectocarpus T... [more]
A0A835YVH9_9STRA1.620e-4677.55Polyadenylate-binding protein n=1 Tax=Tribonema mi... [more]
A0A6A5AH64_9STRA7.040e-4673.47Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A2D4BDJ5_PYTIN1.460e-4477.55Polyadenylate-binding protein n=2 Tax=Pythium TaxI... [more]
A0A6V7IG58_9HYME5.360e-4468.04RRM domain-containing protein (Fragment) n=1 Tax=B... [more]
A0A293M762_ORNER6.700e-4469.39PolyA binding protein cytoplasmic 1 isoform 1 (Fra... [more]
A0A7S2K0X9_9DINO1.380e-4367.35Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
D2K9J5_ORNMO1.400e-4369.39Apoptosis-promoting RNA-binding protein (Fragment)... [more]
A0A6T0CJI1_CHRCT3.520e-4372.45Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A1B0F036_PHLPP3.650e-4369.39Uncharacterized protein n=1 Tax=Phlebotomus papata... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 29..97
e-value: 9.9E-14
score: 61.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 30..97
e-value: 9.2E-18
score: 63.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 28..98
score: 15.76675
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..98
e-value: 4.0E-21
score: 77.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 24..78
e-value: 4.0E-21
score: 77.7
NoneNo IPR availablePANTHERPTHR24012:SF805POLYADENYLATE-BINDING PROTEINcoord: 1..95
NoneNo IPR availablePANTHERPTHR24012RNA BINDING PROTEINcoord: 1..95
IPR045305PABP, RNA recognition motif 2CDDcd12379RRM2_I_PABPscoord: 26..98
e-value: 2.5107E-46
score: 141.15
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 4..97

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9708contigA-nodosum_M_contig9708:15600..16311 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9708.2.1mRNA_A-nodosum_M_contig9708.2.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9708 15600..16335 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9708.2.1 ID=prot_A-nodosum_M_contig9708.2.1|Name=mRNA_A-nodosum_M_contig9708.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=98bp
MNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSL
FGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR045305RRM2_I_PABPs
IPR035979RBD_domain_sf