mRNA_A-nodosum_M_contig9708.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9708.2.1
Unique NamemRNA_A-nodosum_M_contig9708.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: D8LTD5_ECTSI (Polyadenylate-binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD5_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 3.530e-58
Identity = 96/105 (91.43%), Postives = 103/105 (98.10%), Query Frame = 1 
Query:    4 AERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV 318
            AERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIF+KNLD+TVD+KAL+DTFSLFGNILSCKVATD+ GESKGYGYVHYE GVSANMA+AK+NGMLIAGKQV
Sbjct:   96 AERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 200
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: A0A835YVH9_9STRA (Polyadenylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH9_9STRA)

HSP 1 Score: 179 bits (455), Expect = 4.420e-51
Identity = 83/105 (79.05%), Postives = 96/105 (91.43%), Query Frame = 1 
Query:    4 AERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV 318
            AERALDTMNFT IKD  CRIMWSQRDPS+RRSGVGN+F+KNLD+T+D+KAL+DTFSLFGNILSCKVATD+ G SKGYGYVHYET  SAN A+AK++GM++ GKQV
Sbjct:  117 AERALDTMNFTLIKDNPCRIMWSQRDPSMRRSGVGNVFVKNLDETIDNKALYDTFSLFGNILSCKVATDDAGNSKGYGYVHYETAESANEAIAKIDGMVVGGKQV 221
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: A0A6A5AH64_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AH64_9STRA)

HSP 1 Score: 168 bits (425), Expect = 9.680e-51
Identity = 79/105 (75.24%), Postives = 93/105 (88.57%), Query Frame = 1 
Query:    4 AERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV 318
            AERALDTMN+T+IK   CRIMWSQRDP+LR+SGVGNIF+KNLD ++D+KAL+DTFSLFGNILSCKVA D NG SKGYGYVHYET  +A +A+ K+NGMLIAG +V
Sbjct:   89 AERALDTMNYTSIKSVPCRIMWSQRDPTLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAYDLNGNSKGYGYVHYETAEAAYLAIEKINGMLIAGTEV 193
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: A0A2D4BDJ5_PYTIN (Polyadenylate-binding protein n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDJ5_PYTIN)

HSP 1 Score: 174 bits (440), Expect = 3.790e-49
Identity = 83/105 (79.05%), Postives = 94/105 (89.52%), Query Frame = 1 
Query:    4 AERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV 318
            AERALDTMNFT+IK   CRIMWSQRDPSLR+SGVGNIF+KNLD ++D+KAL+DTFSLFGNILSCKVA D NG SKGYGYVHYET  +AN A+AK+NGMLIAG +V
Sbjct:   82 AERALDTMNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDINGNSKGYGYVHYETAEAANEAIAKINGMLIAGTEV 186
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: A0A293M762_ORNER (PolyA binding protein cytoplasmic 1 isoform 1 (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293M762_ORNER)

HSP 1 Score: 162 bits (409), Expect = 9.000e-49
Identity = 75/105 (71.43%), Postives = 93/105 (88.57%), Query Frame = 1 
Query:    4 AERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV 318
            AERALDTMNF  IK++  RIMWSQRDPSLR+SGVGN+F+KNLDK++D+KA++DTFS FGNILSC+VA DE G SKGYG+VH+ET  +AN A++KVNGML+ GK+V
Sbjct:   57 AERALDTMNFDPIKNKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVAIDEEGNSKGYGFVHFETEEAANNAISKVNGMLLNGKKV 161
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: A0A6V7IG58_9HYME (RRM domain-containing protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7IG58_9HYME)

HSP 1 Score: 158 bits (399), Expect = 2.810e-48
Identity = 72/103 (69.90%), Postives = 90/103 (87.38%), Query Frame = 1 
Query:    7 ERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQ 315
            ERALDTMNF  +K +  RIMWSQRDPSLR+SGVGN+F+KNLD+++D+KA++DTFS FGNILSCKVA DE GESKGYG+VH+ET  +AN ++ KVNGML+ GK+
Sbjct:    1 ERALDTMNFDIVKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDETGESKGYGFVHFETEEAANKSIDKVNGMLLNGKK 103
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: A0A1B0F036_PHLPP (Uncharacterized protein n=1 Tax=Phlebotomus papatasi TaxID=29031 RepID=A0A1B0F036_PHLPP)

HSP 1 Score: 161 bits (407), Expect = 5.040e-48
Identity = 75/105 (71.43%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:    4 AERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV 318
            AERALDTMNF  +K +  RIMWSQRDPSLR+SGVGN+F+KNLDK++D+KA++DTFS FGNILSCKVA DE G SKGYG+VH+ET  SAN ++ KVNGML+ GK+V
Sbjct:   56 AERALDTMNFDLLKSRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVAQDEKGSSKGYGFVHFETEESANTSIDKVNGMLLNGKKV 160
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: A0A7T8QTU3_CALRO (Polyadenylate-binding protein (Fragment) n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8QTU3_CALRO)

HSP 1 Score: 159 bits (401), Expect = 9.040e-48
Identity = 73/105 (69.52%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:    4 AERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV 318
            AERALDTMNF  +K +  RIMWSQRDPSLRRSGVGN+F+KNLDK++D+KA++DTFS FGNILSCKVA D  G+SKGYG+VH+ET  +A  +++KVNGML+ GK+V
Sbjct:   35 AERALDTMNFDVLKGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVAQDPTGDSKGYGFVHFETEEAATQSISKVNGMLLNGKKV 139
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: A0A076KTZ9_NEPPI (BLTX464 n=1 Tax=Nephila pilipes TaxID=299642 RepID=A0A076KTZ9_NEPPI)

HSP 1 Score: 162 bits (410), Expect = 9.750e-48
Identity = 75/105 (71.43%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:    4 AERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV 318
            AERALDTMNF T+K +  RIMWSQRDPSLR+SGVGN+F+KNLDK++D+KA++DTFS FGNILSCKVATDE   SKGYG+VH+ET  +AN A+ KVNGML+ G++V
Sbjct:   65 AERALDTMNFDTVKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESSSKGYGFVHFETEEAANNAIIKVNGMLLNGRKV 169
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BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Match: E7D1C7_LATHE (Putative polyA binding protein cytoplasmic 1 isoform 1 (Fragment) n=1 Tax=Latrodectus hesperus TaxID=256737 RepID=E7D1C7_LATHE)

HSP 1 Score: 160 bits (404), Expect = 1.620e-47
Identity = 74/105 (70.48%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:    4 AERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSLFGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV 318
            AERALDTMNF  +K +  RIMWSQRDPSLR+SGVGN+F+KNLDK++D+KA++DTFS FGNILSCKVATDE   SKGYG+VH+ET  +AN A+ KVNGML+ G++V
Sbjct:   67 AERALDTMNFDMVKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKV 171
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9708.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTD5_ECTSI3.530e-5891.43Polyadenylate-binding protein n=2 Tax=Ectocarpus T... [more]
A0A835YVH9_9STRA4.420e-5179.05Polyadenylate-binding protein n=1 Tax=Tribonema mi... [more]
A0A6A5AH64_9STRA9.680e-5175.24Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A2D4BDJ5_PYTIN3.790e-4979.05Polyadenylate-binding protein n=2 Tax=Pythium TaxI... [more]
A0A293M762_ORNER9.000e-4971.43PolyA binding protein cytoplasmic 1 isoform 1 (Fra... [more]
A0A6V7IG58_9HYME2.810e-4869.90RRM domain-containing protein (Fragment) n=1 Tax=B... [more]
A0A1B0F036_PHLPP5.040e-4871.43Uncharacterized protein n=1 Tax=Phlebotomus papata... [more]
A0A7T8QTU3_CALRO9.040e-4869.52Polyadenylate-binding protein (Fragment) n=1 Tax=C... [more]
A0A076KTZ9_NEPPI9.750e-4871.43BLTX464 n=1 Tax=Nephila pilipes TaxID=299642 RepID... [more]
E7D1C7_LATHE1.620e-4770.48Putative polyA binding protein cytoplasmic 1 isofo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9708contigA-nodosum_M_contig9708:15600..16335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LTD5
Preferred namePAB1
PFAMsPABP,RRM_1
Model size318
Max annot lvl2759|Eukaryota
KEGG koko:K13126
KEGG Pathwayko03013,ko03015,ko03018,map03013,map03015,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003727,GO:0003729,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005737,GO:0005840,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008428,GO:0009889,GO:0009894,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010608,GO:0015031,GO:0015833,GO:0015931,GO:0019219,GO:0019222,GO:0030234,GO:0031323,GO:0031326,GO:0031329,GO:0031503,GO:0032268,GO:0032991,GO:0033036,GO:0034248,GO:0034613,GO:0035770,GO:0036464,GO:0042886,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051641,GO:0051649,GO:0060211,GO:0060255,GO:0061013,GO:0065007,GO:0065009,GO:0070717,GO:0070727,GO:0071014,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0097159,GO:0098772,GO:1900151,GO:1901363,GO:1903311,GO:1990841,GO:1990904,GO:2000112
Exons2
Evalue2.34e-54
EggNOG OGsKOG0123@1|root,KOG0123@2759|Eukaryota
DescriptionRNA binding
Cds size294
COG categoryJ
BRITEko00000,ko00001,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870494.9375556-CDS-A-nodosum_M_contig9708:15599..157671680870494.9375556-CDS-A-nodosum_M_contig9708:15599..15767Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9708 15600..15767 -
1680870495.1358278-CDS-A-nodosum_M_contig9708:16185..163111680870495.1358278-CDS-A-nodosum_M_contig9708:16185..16311Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9708 16186..16311 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870495.1516495-UTR-A-nodosum_M_contig9708:16311..163351680870495.1516495-UTR-A-nodosum_M_contig9708:16311..16335Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9708 16312..16335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9708.2.1prot_A-nodosum_M_contig9708.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9708 15600..16311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9708.2.1

>prot_A-nodosum_M_contig9708.2.1 ID=prot_A-nodosum_M_contig9708.2.1|Name=mRNA_A-nodosum_M_contig9708.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=98bp
MNFTTIKDQACRIMWSQRDPSLRRSGVGNIFMKNLDKTVDSKALHDTFSL
FGNILSCKVATDENGESKGYGYVHYETGVSANMAVAKVNGMLIAGKQV
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mRNA from alignment at A-nodosum_M_contig9708:15600..16335-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9708.2.1 ID=mRNA_A-nodosum_M_contig9708.2.1|Name=mRNA_A-nodosum_M_contig9708.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=736bp|location=Sequence derived from alignment at A-nodosum_M_contig9708:15600..16335- (Ascophyllum nodosum dioecious)
ACAGCTGAACGCGCCCTTGATACGATGAACTTCACAACCATCAAGGACCA
GGCTTGCCGCATCATGTGGTCCCAGCGTGACCCTTCCCTTCGCCGGTCGG
GCGTGGGCAATATTTTCATGAAGAACCTCGACAAGACGGTCGACAGCAAA
GTGAGAGAGAGCCCTCGTACAATAAATTGATAGTACCTGGAATAATTACA
TTTGGTAGGAGGCAGCACGTGTGTCTCGTGGTGAAAGGGTCGGCGCAGTC
ACTCCATCATCAAAATATATACAGATACAGTCTGTATCTTGAGGCCGCCC
TCGGGCTGACAAACTGCTATACTCTATACTCTATAACAGGAGAACAACAT
TAGTTCACCATCCGATTCCCACAATGGACCACCCGAGATTTTGCACATCC
TCCCCCTTGTACCTGCGTCGATCGAAACTAACTTTGGACTGTATTTTCTC
CCCCCGTAGATGACTGTTCATTTTACTCTTTAACTGTATTGTGCCTTTTT
TAAACTATATCGTACCTCTTTCTGGCCTCAATTCCACGTCATCACGTCAT
CACCGAACGCAACTCCAGGCCCTCCACGACACGTTTTCCCTGTTCGGGAA
CATTTTGTCGTGCAAAGTGGCAACAGACGAAAACGGCGAAAGCAAGGGAT
ATGGTTATGTTCACTACGAAACGGGCGTGTCGGCTAACATGGCTGTCGCG
AAGGTCAACGGCATGCTCATTGCCGGGAAGCAGGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9708:15600..16335-

>mRNA_A-nodosum_M_contig9708.2.1 ID=mRNA_A-nodosum_M_contig9708.2.1|Name=mRNA_A-nodosum_M_contig9708.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig9708:15600..16335- (Ascophyllum nodosum dioecious)
ATGAACTTCACAACCATCAAGGACCAGGCTTGCCGCATCATGTGGTCCCA
GCGTGACCCTTCCCTTCGCCGGTCGGGCGTGGGCAATATTTTCATGAAGA
ACCTCGACAAGACGGTCGACAGCAAAGCCCTCCACGACACGTTTTCCCTG
TTCGGGAACATTTTGTCGTGCAAAGTGGCAACAGACGAAAACGGCGAAAG
CAAGGGATATGGTTATGTTCACTACGAAACGGGCGTGTCGGCTAACATGG
CTGTCGCGAAGGTCAACGGCATGCTCATTGCCGGGAAGCAGGTG
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