prot_A-nodosum_M_contig968.4.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig968.4.1
Unique Nameprot_A-nodosum_M_contig968.4.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length113
Homology
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5KYH9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.870e-16
Identity = 48/112 (42.86%), Postives = 69/112 (61.61%), Query Frame = 0
Query:    2 GCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQYL 113
            GC I RD  A  L   Q+ Y  S+V++F V+ A+RIPAS GV    K D+       ++  ++P REA+G++MWV+T +RPD++ AVRAVAR    P   H  A  K+++YL
Sbjct:  683 GCAIERDVAAGTLTISQTAYVDSMVKRFDVQSASRIPASPGVDLGPKRDD-------EKGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILRYL 787          
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.170e-15
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 0
Query:    2 GCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQYL 113
            GC   RD  A  LK  Q  YA+ +  +F V+    IP   G++ LS+ D+       +E + +P+RE +G+LMW+AT TRPDIA+AVRAVAR+C +P   H +A L ++ Y+
Sbjct:   59 GCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGMK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYV 163          
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.080e-15
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 0
Query:    2 GCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQYL 113
            GC   RD  A  LK  Q  YA+ +  +F V+    IP   G++ LS+ D+       +E + +P+RE +G+LMW+AT TRPDIA+AVRAVAR+C +P   H +A L ++ Y+
Sbjct:  101 GCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYV 205          
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.090e-15
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 0
Query:    2 GCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQYL 113
            GC   RD  A  LK  Q  YA+ +  +F V+    IP   G++ LS+ D+       +E + +P+RE +G+LMW+AT TRPDIA+AVRAVAR+C +P   H +A L ++ Y+
Sbjct:  160 GCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYV 264          
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.410e-15
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 0
Query:    2 GCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQYL 113
            GC   RD  A  LK  Q  YA+ +  +F V+    IP   G++ LS+ D+       +E + +P+RE +G+LMW+AT TRPDIA+AVRAVAR+C +P   H +A L ++ Y+
Sbjct:  334 GCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYV 438          
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.530e-15
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 0
Query:    2 GCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQYL 113
            GC   RD  A  LK  Q  YA+ +  +F V+    IP   G++ LS+ D+       +E + +P+RE +G+LMW+AT TRPDIA+AVRAVAR+C +P   H +A L ++ Y+
Sbjct:  855 GCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYV 959          
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.010e-15
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 0
Query:    2 GCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQY 112
            GC   R+++   L   Q  +   +  ++ V     +P SSGV+ LS  D  +       A +FP+RE VG+LMW+AT TRPDIA+AVRAVAR+C +P L H  AA+ ++ Y
Sbjct:  184 GCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEV------ATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGY 287          
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5KJH0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH0_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.390e-15
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 0
Query:    2 GCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQY 112
            GC   R+++   L   Q  +   +  ++ V     +P SSGV+ LS  D  +       A  FP+RE VG+LMW+AT TRPDIA+AVRAVAR+C +P L H  AA++++ Y
Sbjct:  581 GCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEV------ATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMEILGY 684          
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.520e-15
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 0
Query:    2 GCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQY 112
            GC   R+++   L   Q  +   +  ++ V     +P SSGV+ LS  D  +       A +FP+RE VG+LMW+AT TRPDIA+AVRAVAR+C +P L H  AA+ ++ Y
Sbjct: 1520 GCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEV------ATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGY 1623          
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.520e-15
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 0
Query:    2 GCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQY 112
            GC   R+++   L   Q  +   +  ++ V     +P SSGV+ LS  D  +       A +FP+RE VG+LMW+AT TRPDIA+AVRAVAR+C +P L H  AA+ ++ Y
Sbjct: 1306 GCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEV------ATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGY 1409          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYH9_9PHAE3.870e-1642.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR24_9PHAE1.170e-1541.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0Z9_9PHAE2.080e-1541.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE2.090e-1541.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE2.410e-1541.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE2.530e-1541.96Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JFG2_9PHAE3.010e-1541.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH0_9PHAE3.390e-1541.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J4N2_9PHAE3.520e-1541.44Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE3.520e-1541.44Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig968contigA-nodosum_M_contig968:102825..103163 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig968.4.1mRNA_A-nodosum_M_contig968.4.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig968 102795..103163 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig968.4.1 ID=prot_A-nodosum_M_contig968.4.1|Name=mRNA_A-nodosum_M_contig968.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=113bp
MGCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKAD
EPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGL
AHKKAALKVMQYL
back to top