mRNA_A-nodosum_M_contig968.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig968.4.1
Unique NamemRNA_A-nodosum_M_contig968.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.960e-19
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 1 
Query:    1 LKDAGDAKYYMGCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQYL 369
            +K+ GD ++Y GC   RD  A  LK  Q  YA+ +  +F V+    IP   G++ LS+ D+       +E + +P+RE +G+LMW+AT TRPDIA+AVRAVAR+C +P   H +A L ++ Y+
Sbjct:   90 VKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYV 205
[Close]
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.990e-19
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 1 
Query:    1 LKDAGDAKYYMGCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQYL 369
            +K+ GD ++Y GC   RD  A  LK  Q  YA+ +  +F V+    IP   G++ LS+ D+       +E + +P+RE +G+LMW+AT TRPDIA+AVRAVAR+C +P   H +A L ++ Y+
Sbjct:  149 VKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYV 264
[Close]
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.210e-19
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 1 
Query:    1 LKDAGDAKYYMGCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQYL 369
            +K+ GD ++Y GC   RD  A  LK  Q  YA+ +  +F V+    IP   G++ LS+ D+       +E + +P+RE +G+LMW+AT TRPDIA+AVRAVAR+C +P   H +A L ++ Y+
Sbjct:  323 VKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYV 438
[Close]
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.470e-19
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 1 
Query:    1 LKDAGDAKYYMGCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQYL 369
            +K+ GD ++Y GC   RD  A  LK  Q  YA+ +  +F V+    IP   G++ LS+ D+       +E + +P+RE +G+LMW+AT TRPDIA+AVRAVAR+C +P   H +A L ++ Y+
Sbjct:  844 VKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYV 959
[Close]
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 6.260e-19
Identity = 51/123 (41.46%), Postives = 76/123 (61.79%), Query Frame = 1 
Query:    1 LKDAGDAKYYMGCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQYL 369
            +K+ GD  +Y GC   RD  A  LK  Q  YA+ +  +F V+    IP   G++ LS+ D+       +E + +P+RE +G+LMW+AT TRPDIA+AVRAVAR+C +P   H +A L ++ Y+
Sbjct:   48 VKNLGDLIWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGMK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYV 163
[Close]
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: Q572I3_PHYIN (Putative polyprotein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=Q572I3_PHYIN)

HSP 1 Score: 90.1 bits (222), Expect = 1.560e-18
Identity = 51/125 (40.80%), Postives = 77/125 (61.60%), Query Frame = 1 
Query:    1 LKDAGDAKYYMGCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRI--PASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQYL 369
            +K+ G+AK+ +G  I  DR+   L   Q+ Y   +VE+F+ + A  +  P ++ ++ LSK   P T +E+ E    PYR  +G LM++ T TRPDIA  V  +ARF E+PG  H KAA++V+QYL
Sbjct: 1048 MKELGEAKFILGMEIDHDRECGTLMIKQTRYIDDIVERFNQRNAKMVEYPCAANLK-LSKMMSPTTEKERAEMWSRPYRSLIGCLMYITTCTRPDIAYVVTQLARFLEDPGTQHWKAAIRVLQYL 1171
[Close]
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.620e-18
Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = 1 
Query:    1 LKDAGDAKYYMGCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQY 366
            +K+ G+ ++Y GC   R+++   L   Q  +   +  ++ V     +P SSGV+ LS  D  +       A +FP+RE VG+LMW+AT TRPDIA+AVRAVAR+C +P L H  AA+ ++ Y
Sbjct:  173 VKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEV------ATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGY 287
[Close]
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.160e-18
Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = 1 
Query:    1 LKDAGDAKYYMGCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQY 366
            +K+ G+ ++Y GC   R+++   L   Q  +   +  ++ V     +P SSGV+ LS  D  +       A +FP+RE VG+LMW+AT TRPDIA+AVRAVAR+C +P L H  AA+ ++ Y
Sbjct: 1509 VKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEV------ATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGY 1623
[Close]
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.160e-18
Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = 1 
Query:    1 LKDAGDAKYYMGCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQY 366
            +K+ G+ ++Y GC   R+++   L   Q  +   +  ++ V     +P SSGV+ LS  D  +       A +FP+RE VG+LMW+AT TRPDIA+AVRAVAR+C +P L H  AA+ ++ Y
Sbjct: 1295 VKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEV------ATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGY 1409
[Close]
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.190e-18
Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = 1 
Query:    1 LKDAGDAKYYMGCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKADEPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGLAHKKAALKVMQY 366
            +K+ G+ ++Y GC   R+++   L   Q  +   +  ++ V     +P SSGV+ LS  D  +       A +FP+RE VG+LMW+AT TRPDIA+AVRAVAR+C +P L H  AA+ ++ Y
Sbjct: 1363 VKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEV------ATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGY 1477
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig968.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0Z9_9PHAE2.960e-1941.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE2.990e-1941.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE4.210e-1941.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE4.470e-1941.46Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5KR24_9PHAE6.260e-1941.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q572I3_PHYIN1.560e-1840.80Putative polyprotein n=1 Tax=Phytophthora infestan... [more]
A0A6H5JFG2_9PHAE1.620e-1840.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J4N2_9PHAE2.160e-1840.16Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE2.160e-1840.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBD4_9PHAE2.190e-1840.16Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig968contigA-nodosum_M_contig968:102795..103163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog221103.XP_007845407.1
Model size369
Max annot lvl221103.XP_007845407.1|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.24e-16
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,39QKZ@33154|Opisthokonta,3Q6Q9@4751|Fungi,3V7VH@5204|Basidiomycota,22D21@155619|Agaricomycetes,3WA55@5338|Agaricales
DescriptionIntegrase core domain
Cds size339
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870486.8173857-UTR-A-nodosum_M_contig968:102794..1028241680870486.8173857-UTR-A-nodosum_M_contig968:102794..102824Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig968 102795..102824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870486.8409915-CDS-A-nodosum_M_contig968:102824..1031631680870486.8409915-CDS-A-nodosum_M_contig968:102824..103163Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig968 102825..103163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig968.4.1prot_A-nodosum_M_contig968.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig968 102825..103163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig968.4.1

>prot_A-nodosum_M_contig968.4.1 ID=prot_A-nodosum_M_contig968.4.1|Name=mRNA_A-nodosum_M_contig968.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=113bp
MGCHITRDRKAHELKRDQSLYAKSVVEKFSVKKANRIPASSGVQTLSKAD
EPQTPEEQKEALKFPYREAVGALMWVATMTRPDIASAVRAVARFCENPGL
AHKKAALKVMQYL
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mRNA from alignment at A-nodosum_M_contig968:102795..103163+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig968.4.1 ID=mRNA_A-nodosum_M_contig968.4.1|Name=mRNA_A-nodosum_M_contig968.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at A-nodosum_M_contig968:102795..103163+ (Ascophyllum nodosum dioecious)
TTGAAGGACGCAGGTGACGCCAAGTACTACATGGGGTGTCACATCACAAG
GGACCGCAAAGCGCACGAATTGAAGCGCGACCAAAGCTTATACGCAAAGT
CGGTGGTGGAGAAATTCAGCGTAAAGAAGGCAAACAGGATACCAGCGTCT
TCTGGGGTGCAAACCCTCTCAAAAGCGGATGAGCCGCAAACCCCGGAGGA
GCAGAAAGAGGCGTTAAAGTTCCCATACCGAGAGGCAGTGGGGGCGCTCA
TGTGGGTGGCAACGATGACACGGCCAGACATTGCGTCCGCGGTACGTGCT
GTGGCCAGGTTCTGTGAAAACCCTGGACTGGCGCATAAAAAGGCGGCGTT
GAAGGTAATGCAATATCTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig968:102795..103163+

>mRNA_A-nodosum_M_contig968.4.1 ID=mRNA_A-nodosum_M_contig968.4.1|Name=mRNA_A-nodosum_M_contig968.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=339bp|location=Sequence derived from alignment at A-nodosum_M_contig968:102795..103163+ (Ascophyllum nodosum dioecious)
ATGGGGTGTCACATCACAAGGGACCGCAAAGCGCACGAATTGAAGCGCGA
CCAAAGCTTATACGCAAAGTCGGTGGTGGAGAAATTCAGCGTAAAGAAGG
CAAACAGGATACCAGCGTCTTCTGGGGTGCAAACCCTCTCAAAAGCGGAT
GAGCCGCAAACCCCGGAGGAGCAGAAAGAGGCGTTAAAGTTCCCATACCG
AGAGGCAGTGGGGGCGCTCATGTGGGTGGCAACGATGACACGGCCAGACA
TTGCGTCCGCGGTACGTGCTGTGGCCAGGTTCTGTGAAAACCCTGGACTG
GCGCATAAAAAGGCGGCGTTGAAGGTAATGCAATATCTA
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