prot_A-nodosum_M_contig967.11.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig967.11.1
Unique Nameprot_A-nodosum_M_contig967.11.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length116
Homology
BLAST of mRNA_A-nodosum_M_contig967.11.1 vs. uniprot
Match: A0A6H5KSM6_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM6_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.600e-11
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 0
Query:   38 TEVDINEFHCSFGHVHKELLLETAKQRGVTLTGELHECKGCSMAK 82
            T VDIN+FHC++GH H+ LL  TAKQ+G TL GEL EC GCS AK
Sbjct:  523 TPVDINDFHCAYGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAK 567          
BLAST of mRNA_A-nodosum_M_contig967.11.1 vs. uniprot
Match: A0A6H5KHU9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHU9_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.300e-9
Identity = 29/58 (50.00%), Postives = 35/58 (60.34%), Query Frame = 0
Query:   35 NIDTEVDINEFHCSFGHVHKELLLETAKQRGVTLTGELHECKGCSMAKDARSQSPRPP 92
            + D  VDIN FH S  H  + L  ETA+QRG+TLTG L  C  C  AK  RS +P+ P
Sbjct:   70 STDKSVDINRFHRSLAHACEPLSRETARQRGITLTGTLEPCSDCMKAKGKRSSAPKGP 127          
BLAST of mRNA_A-nodosum_M_contig967.11.1 vs. uniprot
Match: A0A6H5LE52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE52_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.400e-9
Identity = 29/58 (50.00%), Postives = 35/58 (60.34%), Query Frame = 0
Query:   35 NIDTEVDINEFHCSFGHVHKELLLETAKQRGVTLTGELHECKGCSMAKDARSQSPRPP 92
            + D  VDIN FH S  H  + LL ETA+QRG+TLTG L  C  C  AK  R+  P+ P
Sbjct:  509 STDKSVDINRFHRSLAHACEPLLRETARQRGITLTGTLEPCSDCMKAKGKRASVPKGP 566          
BLAST of mRNA_A-nodosum_M_contig967.11.1 vs. uniprot
Match: A0A6H5L197_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L197_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 7.440e-8
Identity = 28/53 (52.83%), Postives = 32/53 (60.38%), Query Frame = 0
Query:   40 VDINEFHCSFGHVHKELLLETAKQRGVTLTGELHECKGCSMAKDARSQSPRPP 92
            VDIN FH S  H  + LL ETAKQRG+ LTG+L  C  C  A+  R   PR P
Sbjct:   79 VDINRFHRSLAHACEPLLRETAKQRGIVLTGKLEPCTDCMKAQGRRRSVPRGP 131          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig967.11.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KSM6_9PHAE1.600e-1166.67CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KHU9_9PHAE3.300e-950.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LE52_9PHAE3.400e-950.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L197_9PHAE7.440e-852.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig967contigA-nodosum_M_contig967:56973..57320 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig967.11.1mRNA_A-nodosum_M_contig967.11.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig967 56848..57428 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig967.11.1 ID=prot_A-nodosum_M_contig967.11.1|Name=mRNA_A-nodosum_M_contig967.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=116bp
MVLCPHCRETRSNARIPCTKRQCMCNNRPWCETPNIDTEVDINEFHCSFG
HVHKELLLETAKQRGVTLTGELHECKGCSMAKDARSQSPRPPKVVQISVV
AVSFSMFADRRVYDQ*
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