mRNA_A-nodosum_M_contig967.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig967.11.1
Unique NamemRNA_A-nodosum_M_contig967.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig967.11.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 8.590e-12
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 3 
Query:  360 KKPIAKTTKSRADKRGGRVFLDVCGPKSVRSIGGKEYMLLVKDDFSRFSAVYFMRSKSEVSKYFKQYLADHR 575
            KK IA+ TKSR+DK+ GRVF+D+ G K V S+GGK Y ++VKDDF+R + +YF++ KS+    F+ +LA  R
Sbjct:  709 KKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVR 780
[Close]
BLAST of mRNA_A-nodosum_M_contig967.11.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 8.650e-12
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 3 
Query:  360 KKPIAKTTKSRADKRGGRVFLDVCGPKSVRSIGGKEYMLLVKDDFSRFSAVYFMRSKSEVSKYFKQYLADHR 575
            KK IA+ TKSR+DK+ GRVF+D+ G K V S+GGK Y ++VKDDF+R + +YF++ KS+    F+ +LA  R
Sbjct:  416 KKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVR 487
[Close]
BLAST of mRNA_A-nodosum_M_contig967.11.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.110e-11
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 3 
Query:  360 KKPIAKTTKSRADKRGGRVFLDVCGPKSVRSIGGKEYMLLVKDDFSRFSAVYFMRSKSEVSKYFKQYLADHR 575
            KK IA  TK R+DK+ GRVF+D+ G K V S+GGK Y ++VKDDF+R + +YF++SKS+ +  F+ +LA  R
Sbjct:  615 KKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVR 686
[Close]
BLAST of mRNA_A-nodosum_M_contig967.11.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.500e-11
Identity = 35/74 (47.30%), Postives = 55/74 (74.32%), Query Frame = 3 
Query:  354 GRKKPIAKTTKSRADKRGGRVFLDVCGPKSVRSIGGKEYMLLVKDDFSRFSAVYFMRSKSEVSKYFKQYLADHR 575
            G  KPI   T +RA K+  RVF+D+ G   V+S+GGK Y L+VKDD++R++ VYF++ KS+ ++ F++YLA++R
Sbjct:   17 GLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENR 90
[Close]
BLAST of mRNA_A-nodosum_M_contig967.11.1 vs. uniprot
Match: A0A6H5JYF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.220e-11
Identity = 35/74 (47.30%), Postives = 55/74 (74.32%), Query Frame = 3 
Query:  354 GRKKPIAKTTKSRADKRGGRVFLDVCGPKSVRSIGGKEYMLLVKDDFSRFSAVYFMRSKSEVSKYFKQYLADHR 575
            G  KPI   T +RA K+  RVF+D+ G   V+S+GGK Y L+VKDD++R++ VYF++ KS+ ++ F++YLA++R
Sbjct:  151 GLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENR 224
[Close]
BLAST of mRNA_A-nodosum_M_contig967.11.1 vs. uniprot
Match: A0A6H5KKD5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD5_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.840e-11
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 3 
Query:  360 KKPIAKTTKSRADKRGGRVFLDVCGPKSVRSIGGKEYMLLVKDDFSRFSAVYFMRSKSEVSKYFKQYLA 566
            KK IA  TK R+DK+ GRVF+D+ G K V S+GG  Y ++VKDDF+R + +YF++SKS+ +  F+ +LA
Sbjct:   20 KKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGNHYPMIVKDDFTRRTWIYFLKSKSDAASAFRSFLA 88
[Close]
BLAST of mRNA_A-nodosum_M_contig967.11.1 vs. uniprot
Match: A0A6H5JF07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF07_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 5.930e-11
Identity = 35/74 (47.30%), Postives = 55/74 (74.32%), Query Frame = 3 
Query:  354 GRKKPIAKTTKSRADKRGGRVFLDVCGPKSVRSIGGKEYMLLVKDDFSRFSAVYFMRSKSEVSKYFKQYLADHR 575
            G  KPI   T +RA K+  RVF+D+ G   V+S+GGK Y L+VKDD++R++ VYF++ KS+ ++ F++YLA++R
Sbjct:  356 GLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENR 429
[Close]
BLAST of mRNA_A-nodosum_M_contig967.11.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 6.020e-11
Identity = 34/72 (47.22%), Postives = 51/72 (70.83%), Query Frame = 3 
Query:  360 KKPIAKTTKSRADKRGGRVFLDVCGPKSVRSIGGKEYMLLVKDDFSRFSAVYFMRSKSEVSKYFKQYLADHR 575
            +K I + TK R+DK+ GRVF D+ G K + S+GGK Y ++VKDDF+R + +YF+R+KS+    F+ +LA  R
Sbjct:   77 RKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVR 148
[Close]
BLAST of mRNA_A-nodosum_M_contig967.11.1 vs. uniprot
Match: A0A6H5L158_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L158_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 6.360e-11
Identity = 35/74 (47.30%), Postives = 55/74 (74.32%), Query Frame = 3 
Query:  354 GRKKPIAKTTKSRADKRGGRVFLDVCGPKSVRSIGGKEYMLLVKDDFSRFSAVYFMRSKSEVSKYFKQYLADHR 575
            G  KPI   T +RA K+  RVF+D+ G   V+S+GGK Y L+VKDD++R++ VYF++ KS+ ++ F++YLA++R
Sbjct:  198 GLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENR 271
[Close]
BLAST of mRNA_A-nodosum_M_contig967.11.1 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 6.890e-11
Identity = 35/74 (47.30%), Postives = 55/74 (74.32%), Query Frame = 3 
Query:  354 GRKKPIAKTTKSRADKRGGRVFLDVCGPKSVRSIGGKEYMLLVKDDFSRFSAVYFMRSKSEVSKYFKQYLADHR 575
            G  KPI   T +RA K+  RVF+D+ G   V+S+GGK Y L+VKDD++R++ VYF++ KS+ ++ F++YLA++R
Sbjct:   48 GLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENR 121
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig967.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBA7_9PHAE8.590e-1251.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE8.650e-1251.39Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M6_9PHAE1.110e-1151.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7U9_9PHAE1.500e-1147.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JYF9_9PHAE3.220e-1147.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKD5_9PHAE4.840e-1150.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JF07_9PHAE5.930e-1147.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVR5_9PHAE6.020e-1147.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L158_9PHAE6.360e-1147.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGN1_9PHAE6.890e-1147.30Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig967contigA-nodosum_M_contig967:56848..57428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size581
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870484.7451313-UTR-A-nodosum_M_contig967:56847..569721680870484.7451313-UTR-A-nodosum_M_contig967:56847..56972Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig967 56848..56972 -
1680870484.766903-UTR-A-nodosum_M_contig967:57320..574281680870484.766903-UTR-A-nodosum_M_contig967:57320..57428Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig967 57321..57428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870484.7576983-CDS-A-nodosum_M_contig967:56972..573201680870484.7576983-CDS-A-nodosum_M_contig967:56972..57320Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig967 56973..57320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig967.11.1prot_A-nodosum_M_contig967.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig967 56973..57320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig967.11.1

>prot_A-nodosum_M_contig967.11.1 ID=prot_A-nodosum_M_contig967.11.1|Name=mRNA_A-nodosum_M_contig967.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=116bp
MVLCPHCRETRSNARIPCTKRQCMCNNRPWCETPNIDTEVDINEFHCSFG
HVHKELLLETAKQRGVTLTGELHECKGCSMAKDARSQSPRPPKVVQISVV
AVSFSMFADRRVYDQ*
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mRNA from alignment at A-nodosum_M_contig967:56848..57428-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig967.11.1 ID=mRNA_A-nodosum_M_contig967.11.1|Name=mRNA_A-nodosum_M_contig967.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=581bp|location=Sequence derived from alignment at A-nodosum_M_contig967:56848..57428- (Ascophyllum nodosum dioecious)
TCCTCTCCTAAGTCACAATCTCCTGTCGCTTAAGCAGTTCACACGCCGTG
CCGGTCACTCATATCGTGGCGATGGTGACGGGGTGACATTGTTCTGCAAG
TCTGGCAGATGGTTCTTTGCCCCCACTGTCGGGAAACTAGATCGAATGCG
AGGATACCGTGCACGAAGCGACAGTGCATGTGCAACAATCGTCCCTGGTG
TGAAACCCCCAACATCGACACTGAAGTCGACATTAATGAATTCCACTGTT
CTTTTGGACACGTTCACAAGGAACTTCTGTTGGAGACGGCCAAGCAACGT
GGCGTTACTCTAACGGGCGAGCTGCACGAGTGCAAAGGATGTTCGATGGC
CAAGGACGCAAGAAGCCAATCGCCAAGACCACCAAAAGTCGTGCAGATAA
GCGTGGTGGCCGTGTCTTTCTCGATGTTTGCGGACCGAAGAGTGTACGAT
CAATAGGGGGAAAAGAGTACATGCTTTTGGTCAAAGATGATTTTTCTAGG
TTTTCTGCTGTGTACTTCATGAGGAGTAAGAGTGAGGTTTCCAAATATTT
CAAGCAATACCTTGCAGACCATCGCTTTTCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig967:56848..57428-

>mRNA_A-nodosum_M_contig967.11.1 ID=mRNA_A-nodosum_M_contig967.11.1|Name=mRNA_A-nodosum_M_contig967.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at A-nodosum_M_contig967:56848..57428- (Ascophyllum nodosum dioecious)
ATGGTTCTTTGCCCCCACTGTCGGGAAACTAGATCGAATGCGAGGATACC
GTGCACGAAGCGACAGTGCATGTGCAACAATCGTCCCTGGTGTGAAACCC
CCAACATCGACACTGAAGTCGACATTAATGAATTCCACTGTTCTTTTGGA
CACGTTCACAAGGAACTTCTGTTGGAGACGGCCAAGCAACGTGGCGTTAC
TCTAACGGGCGAGCTGCACGAGTGCAAAGGATGTTCGATGGCCAAGGACG
CAAGAAGCCAATCGCCAAGACCACCAAAAGTCGTGCAGATAAGCGTGGTG
GCCGTGTCTTTCTCGATGTTTGCGGACCGAAGAGTGTACGATCAATAG
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