prot_A-nodosum_M_contig9635.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9635.1.1
Unique Nameprot_A-nodosum_M_contig9635.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length80
Homology
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.410e-25
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 0
Query:    2 VPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDF 77
            +P+Y DNT+TLH  GNR++S R KHIALR+FF++ELV EG I+IHYV T+D LAD+GTKH  KHR   L+ LIN+F
Sbjct: 1589 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664          
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 6.060e-25
Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 0
Query:    2 VPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDF 77
            +P+Y DNT+TLH  GNR++S R KHIALR+FF++ELV EG I+IHYV T+D LAD+GTKH   HR   L+ LIN+F
Sbjct:  920 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995          
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 7.600e-25
Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 0
Query:    2 VPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDF 77
            +P+Y DNT+TLH  GNR++S R KHIALR+FF++ELV EG I+IHY  T+D LAD+GTKH  KHR   L+ LIN+F
Sbjct:  360 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435          
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.110e-24
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 0
Query:    2 VPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDF 77
            +P+Y DNT+TLH  GNR++S R KHIALR+FF++ELV EG I+IHY  T+D LA +GTKH  KHR   L+  IN+F
Sbjct:  135 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNF 210          
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.490e-24
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 0
Query:    2 VPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLIND 76
            +P+Y DNT+TLH  GNR++S R KHIALR+FF++ELV EG I+IHYV T+D LAD+GTKH  KHR   L+ LIN+
Sbjct:  581 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINN 655          
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 8.830e-23
Identity = 43/74 (58.11%), Postives = 58/74 (78.38%), Query Frame = 0
Query:    2 VPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLIN 75
            VPLY DNT+TLH  GNR++S R KHIALR+F+++EL+ EG I+IHY+ T   +AD+GTKHL KHR   L+ +I+
Sbjct: 1090 VPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHLNKHRLKHLLDIIS 1163          
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.200e-22
Identity = 45/74 (60.81%), Postives = 60/74 (81.08%), Query Frame = 0
Query:    1 SVPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLI 74
            S PLY+ NT+TLHV GN+T+S R KH+ALR+F+++E+V+EG I+IHY+ T+D LAD+GTKHL K RH  LI  I
Sbjct:  613 SAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKI 685          
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.290e-21
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0
Query:    2 VPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDFKA 79
            VPLY DNT+TLH  GNR++S R KHIALR+FF+++LV EG I IH+V T    AD+GTKHL K R   L+ +I +F  
Sbjct:  278 VPLYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTKHLNKDRFQHLLNMIKNFNV 355          
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.450e-21
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 0
Query:    2 VPLYLDNTSTLHVAGNRT-YSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDFKA 79
            VPLY DNT+TLH  GNR+ +S R KHIALR+F+++ELV EG I+IHY+ T    AD+GTKHL KHR   L+ +I+ F  
Sbjct:  901 VPLYCDNTATLHALGNRSSFSSRTKHIALRFFYIRELVSEGRISIHYIPTDSNPADIGTKHLNKHRLKHLLDIISSFNV 979          
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.670e-21
Identity = 45/78 (57.69%), Postives = 54/78 (69.23%), Query Frame = 0
Query:    2 VPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDFKA 79
            VPLY DNT+TLH  GNR+YS   KHIALR+FF++ELV EG I IHYV      AD+GTKHL K R   L+ +I +F  
Sbjct:  643 VPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNFNV 720          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJH6_9PHAE2.410e-2563.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE6.060e-2561.84Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5U2_9PHAE7.600e-2561.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMK0_9PHAE1.110e-2459.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE1.490e-2462.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K129_9PHAE8.830e-2358.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE1.200e-2260.81CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J9N2_9PHAE1.290e-2156.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC00_9PHAE1.450e-2156.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG39_9PHAE2.670e-2157.69Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 2..64
e-value: 4.96317E-24
score: 85.9829

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9635contigA-nodosum_M_contig9635:13145..13384 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9635.1.1mRNA_A-nodosum_M_contig9635.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9635 13145..13384 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9635.1.1 ID=prot_A-nodosum_M_contig9635.1.1|Name=mRNA_A-nodosum_M_contig9635.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=80bp
SVPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNT
QDQLADLGTKHLGKHRHLALIKLINDFKA*
back to top