prot_A-nodosum_M_contig96.55.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig96.55.2
Unique Nameprot_A-nodosum_M_contig96.55.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length194
Homology
BLAST of mRNA_A-nodosum_M_contig96.55.2 vs. uniprot
Match: D8LFE5_ECTSI (tRNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFE5_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 3.690e-94
Identity = 134/190 (70.53%), Postives = 157/190 (82.63%), Query Frame = 0
Query:    4 GDAQAINRSTSALSSMGDQPDGTKLDLRVGRITKVWPHETGDKLYCEEIDVGEDAPRQIASGLVPYYSIDDMKDRRVVVMCNLKARNLKGFKSQGMVMCAAAALGDGKEHVEFIVPPENVPLGEKLLFDGVSGGPFEPATAAQMEKKKILERVLPELRTDEEGTVRWRQHALMSSLGPCMAPTARGGAVR 193
            G A A N   S+     DQPDGTK+DLRVG+IT+VW HET DKLYCEEIDVGE APR IASGLVP+YS+++MK R+V+VMCNLK RNLKGFKSQGMV+CA  ALGDGKEHVE +VPPE   +GE+L F+G++GGPFEP +AAQMEKKK+L+++LPEL TD EGTVRWR HAL+SS G C APT R GAVR
Sbjct:   95 GKAAASNVGVSSA----DQPDGTKVDLRVGQITRVWTHETADKLYCEEIDVGEGAPRNIASGLVPHYSLEEMKGRKVIVMCNLKPRNLKGFKSQGMVVCAVGALGDGKEHVELVVPPEGSAVGERLSFEGLAGGPFEPVSAAQMEKKKVLDKILPELTTDVEGTVRWRDHALVSSCGACTAPTVRDGAVR 280          
BLAST of mRNA_A-nodosum_M_contig96.55.2 vs. uniprot
Match: A0A7S2Y0W4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0W4_9STRA)

HSP 1 Score: 235 bits (600), Expect = 2.750e-75
Identity = 108/174 (62.07%), Postives = 132/174 (75.86%), Query Frame = 0
Query:   20 GDQPDGTKLDLRVGRITKVWPHETGDKLYCEEIDVGEDAPRQIASGLVPYYSIDDMKDRRVVVMCNLKARNLKGFKSQGMVMCAAAALGDGKEHVEFIVPPENVPLGEKLLFDGVSGGPFEPATAAQMEKKKILERVLPELRTDEEGTVRWRQHALMSSLGPCMAPTARGGAVR 193
            GDQPD TK+DLRVG+ITKVW HET DKLYCEEIDVGED PR IASGLVP+YS+++M+ RRV+V+CNLK RNL GFKS GMV+CA     DG E VEF+ PPE   +GE++ ++G+ GGPFEP TAAQ+EKKK+   VLP L TD      W+ H +M+S GPC+A T   G +R
Sbjct:   78 GDQPDITKIDLRVGKITKVWRHETADKLYCEEIDVGEDEPRAIASGLVPHYSLEEMQGRRVLVLCNLKPRNLVGFKSHGMVLCAVENKPDGSEKVEFVEPPEGAAVGERVQYEGLGGGPFEPITAAQVEKKKVFPAVLPNLSTDANHVGMWKGHKMMTSAGPCVAATISNGKLR 251          
BLAST of mRNA_A-nodosum_M_contig96.55.2 vs. uniprot
Match: G4YER7_PHYSP (tRNA-binding domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YER7_PHYSP)

HSP 1 Score: 221 bits (562), Expect = 7.190e-70
Identity = 101/169 (59.76%), Postives = 129/169 (76.33%), Query Frame = 0
Query:   21 DQPDGTKLDLRVGRITKVWPHETGDKLYCEEIDVGEDAPRQIASGLVPYYSIDDMKDRRVVVMCNLKARNLKGFKSQGMVMCAAAALGDGKEHVEFIVPPENVPLGEKLLFDGVSGGPFEPATAAQMEKKKILERVLPELRTDEEGTVRWRQHALMSSLGPCMAPTARG 189
            +QP+ TKLD+RVG+I KVW HET DKLYCEEIDVGEDAPRQIASGLV +YS++ M+D RV+V+CNLK RNL GF+S GMVMCAA  L DGKE V F+ PPE   +GE++ F+G++G PF PA   Q+EKKK+L  +  E++TD+ G  +W++H   +S GPC AP   G
Sbjct:   58 NQPEITKLDIRVGKIVKVWKHETADKLYCEEIDVGEDAPRQIASGLVHHYSLEQMQDARVLVLCNLKPRNLVGFRSHGMVMCAAVPLEDGKEKVAFVTPPEGAKVGERITFEGLTGEPFSPA---QVEKKKVLTVLGDEMKTDDSGVAKWKEHVFGTSAGPCTAPVNNG 223          
BLAST of mRNA_A-nodosum_M_contig96.55.2 vs. uniprot
Match: K3W9Y0_GLOUD (tRNA-binding domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9Y0_GLOUD)

HSP 1 Score: 220 bits (560), Expect = 1.870e-69
Identity = 99/169 (58.58%), Postives = 129/169 (76.33%), Query Frame = 0
Query:   21 DQPDGTKLDLRVGRITKVWPHETGDKLYCEEIDVGEDAPRQIASGLVPYYSIDDMKDRRVVVMCNLKARNLKGFKSQGMVMCAAAALGDGKEHVEFIVPPENVPLGEKLLFDGVSGGPFEPATAAQMEKKKILERVLPELRTDEEGTVRWRQHALMSSLGPCMAPTARG 189
            DQP+ TKLD+RVG+I KVW HET DKLYCEEIDVGED PRQIASGLV +YS+++M+DRR++V+CNLK RNL GFKS GMVMCAA  +  GKE V F+ PP +  +GE+++FDG++G P+ PA   Q+EKKK+L  +  +++TD  G  +W+ H   +S GPC AP A G
Sbjct:   66 DQPEITKLDIRVGKIVKVWKHETADKLYCEEIDVGEDEPRQIASGLVYHYSLEEMQDRRILVLCNLKPRNLVGFKSHGMVMCAAVPIEGGKEKVAFVDPPADAKIGERIVFDGLTGEPYTPA---QVEKKKVLVNIGEDMKTDASGVAKWKDHVFNTSAGPCTAPVANG 231          
BLAST of mRNA_A-nodosum_M_contig96.55.2 vs. uniprot
Match: D0MS46_PHYIT (tRNA-binding domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0MS46_PHYIT)

HSP 1 Score: 219 bits (557), Expect = 4.260e-69
Identity = 99/169 (58.58%), Postives = 129/169 (76.33%), Query Frame = 0
Query:   21 DQPDGTKLDLRVGRITKVWPHETGDKLYCEEIDVGEDAPRQIASGLVPYYSIDDMKDRRVVVMCNLKARNLKGFKSQGMVMCAAAALGDGKEHVEFIVPPENVPLGEKLLFDGVSGGPFEPATAAQMEKKKILERVLPELRTDEEGTVRWRQHALMSSLGPCMAPTARG 189
            +QP+ TKLD+RVG+I KVW HET DKLYCEEIDVGED PR IASGLV +YS+++M+DRRV+V+CNLK RNL GF+S GMVMCAA  L DGKE V F+ PPE   +GE++ F+G++G PF PA   Q+EKKK+L  +  +++TD+ G  +W++H   +S GPC AP   G
Sbjct:   59 NQPEITKLDIRVGKIVKVWKHETADKLYCEEIDVGEDEPRHIASGLVYHYSLEEMQDRRVLVLCNLKPRNLVGFRSHGMVMCAAVPLEDGKEKVAFVTPPEGAKIGERITFEGLTGEPFSPA---QVEKKKVLTVLGDDMKTDDNGVAKWKEHVFGTSAGPCTAPVNNG 224          
BLAST of mRNA_A-nodosum_M_contig96.55.2 vs. uniprot
Match: A0A8K1CBM3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBM3_PYTOL)

HSP 1 Score: 226 bits (575), Expect = 1.360e-68
Identity = 103/179 (57.54%), Postives = 133/179 (74.30%), Query Frame = 0
Query:   15 ALSSMGDQPDGTKLDLRVGRITKVWPHETGDKLYCEEIDVGEDAPRQIASGLVPYYSIDDMKDRRVVVMCNLKARNLKGFKSQGMVMCAAAALGDGKEHVEFIVPPENVPLGEKLLFDGVSGGPFEPATAAQMEKKKILERVLPELRTDEEGTVRWRQHALMSSLGPCMAPTARGGAVR 193
            A  +  DQP+ TKLD+RVG+I KVW HET DKLYCEEIDVGED PRQIASGLV +YS+++M+D R++V+CNLKARNL GFKS GMVMCAA  L DGKE V+F+ PP +  +GE+++FDG++G PF PA   Q+EKKK+L  +  +++TDE G   W+ H   +S GPC AP      +R
Sbjct:  314 AAEADADQPEITKLDIRVGKIVKVWKHETADKLYCEEIDVGEDEPRQIASGLVYHYSLEEMQDHRILVLCNLKARNLVGFKSHGMVMCAATPLEDGKEKVKFVEPPADAKIGERIVFDGLTGEPFTPA---QVEKKKVLVNIGEDMKTDENGVATWKGHVFQTSAGPCTAPGVPNAVIR 489          
BLAST of mRNA_A-nodosum_M_contig96.55.2 vs. uniprot
Match: A0A2D4BR83_PYTIN (Methionine-tRNA ligase, beta subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BR83_PYTIN)

HSP 1 Score: 223 bits (567), Expect = 3.130e-68
Identity = 101/169 (59.76%), Postives = 130/169 (76.92%), Query Frame = 0
Query:   21 DQPDGTKLDLRVGRITKVWPHETGDKLYCEEIDVGEDAPRQIASGLVPYYSIDDMKDRRVVVMCNLKARNLKGFKSQGMVMCAAAALGDGKEHVEFIVPPENVPLGEKLLFDGVSGGPFEPATAAQMEKKKILERVLPELRTDEEGTVRWRQHALMSSLGPCMAPTARG 189
            DQP+ TKLD+RVG+I KVW H+T DKLYCEEIDVGEDAPRQIASGLV +YS+++M+DRR++V+CNLKARNL GFKS GMVMCAA    DGKE V F+ PP +  +GE+++F+G++G PF PA   Q+EKKK+L  +  +++TD  G   W+ H   +S GPC AP A G
Sbjct:  245 DQPEITKLDIRVGKIVKVWKHDTADKLYCEEIDVGEDAPRQIASGLVYHYSLEEMQDRRILVLCNLKARNLVGFKSHGMVMCAAVPTEDGKEKVAFVEPPADAAIGERIVFEGLTGEPFTPA---QVEKKKVLVNIGEDMKTDANGIATWKGHVFQTSAGPCTAPVANG 410          
BLAST of mRNA_A-nodosum_M_contig96.55.2 vs. uniprot
Match: A0A225VLY1_9STRA (Methionine-tRNA ligase, beta subunit n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VLY1_9STRA)

HSP 1 Score: 215 bits (547), Expect = 1.160e-67
Identity = 96/169 (56.80%), Postives = 129/169 (76.33%), Query Frame = 0
Query:   21 DQPDGTKLDLRVGRITKVWPHETGDKLYCEEIDVGEDAPRQIASGLVPYYSIDDMKDRRVVVMCNLKARNLKGFKSQGMVMCAAAALGDGKEHVEFIVPPENVPLGEKLLFDGVSGGPFEPATAAQMEKKKILERVLPELRTDEEGTVRWRQHALMSSLGPCMAPTARG 189
            +QP+ TKLD+RVG+I KVW HET DKLYCEEIDVGED PRQIASGLV +Y++++M+DR V+V+CNLK RNL GF+S GMVMCAA  L DGKE V F+ PP+   +GE++ F+G++G P  PA   Q+EKKK+L  +  +++TD++G  +W++H   +S GPC AP   G
Sbjct:   53 NQPEITKLDIRVGKIVKVWKHETADKLYCEEIDVGEDEPRQIASGLVHHYTLEEMQDRSVLVLCNLKPRNLVGFRSHGMVMCAAVPLEDGKEKVAFVTPPQGAKVGERVTFEGLTGEPLSPA---QVEKKKVLTVLGDDMKTDDKGVAKWKEHVFNTSAGPCTAPVTNG 218          
BLAST of mRNA_A-nodosum_M_contig96.55.2 vs. uniprot
Match: A0A662WEL3_9STRA (tRNA-binding domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WEL3_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.230e-67
Identity = 99/169 (58.58%), Postives = 127/169 (75.15%), Query Frame = 0
Query:   21 DQPDGTKLDLRVGRITKVWPHETGDKLYCEEIDVGEDAPRQIASGLVPYYSIDDMKDRRVVVMCNLKARNLKGFKSQGMVMCAAAALGDGKEHVEFIVPPENVPLGEKLLFDGVSGGPFEPATAAQMEKKKILERVLPELRTDEEGTVRWRQHALMSSLGPCMAPTARG 189
            +QP+ TKLD+RVG+I KVW HET DKLYCEEIDVGEDAPRQIASGLV +YS+++M+ RRV+V+CNLK RNL GF+S GMVMC A  L DGKE V F+ PP +  LGE++ F+G+ G PF PA   Q+EKKK+L  +  +++TD+ G  +W+ H   +S GPC AP   G
Sbjct:   77 NQPEITKLDIRVGQIVKVWKHETADKLYCEEIDVGEDAPRQIASGLVFHYSLEEMQGRRVLVLCNLKPRNLVGFRSHGMVMCTAVPLADGKERVAFVTPPTDAKLGERVSFEGLDGEPFSPA---QVEKKKVLAVLGDDMKTDDAGVAKWKTHVFGTSAGPCTAPVTNG 242          
BLAST of mRNA_A-nodosum_M_contig96.55.2 vs. uniprot
Match: M4BIG3_HYAAE (tRNA-binding domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BIG3_HYAAE)

HSP 1 Score: 214 bits (546), Expect = 1.990e-67
Identity = 102/180 (56.67%), Postives = 133/180 (73.89%), Query Frame = 0
Query:   14 SALSSMGDQPDGTKLDLRVGRITKVWPHETGDKLYCEEIDVGEDAPRQIASGLVPYYSIDDMKDRRVVVMCNLKARNLKGFKSQGMVMCAAAALGDGKEHVEFIVPPENVPLGEKLLFDGVSGGPFEPATAAQMEKKKILERVLPELRTDEEGTVRWRQHALMSSLGPCMAPTARGGAVR 193
            SA+ S  +QP+ TKLD+RVG I  VW HET DKLYCEEIDVGEDAPRQIASGLVP+Y++++M+DRRV+V+CNLKARNL GF+S GMV+CAA  L DGKEHV F+ PP +  +GE++ F G+ G P  PA   Q+EKKK+L  +   ++TD++G  +W +H   +S GPC A     G +R
Sbjct:   54 SAIDS--NQPEITKLDIRVGHIINVWKHETADKLYCEEIDVGEDAPRQIASGLVPHYTLEEMQDRRVLVLCNLKARNLVGFRSHGMVLCAAVPLADGKEHVVFVTPPLDAKVGERITFPGLVGEPLSPA---QVEKKKVLAVLGDAMKTDDKGVAKWLEHEFTTSAGPCTA-LVNNGVIR 227          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig96.55.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFE5_ECTSI3.690e-9470.53tRNA-binding domain-containing protein n=2 Tax=Ect... [more]
A0A7S2Y0W4_9STRA2.750e-7562.07Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
G4YER7_PHYSP7.190e-7059.76tRNA-binding domain-containing protein n=3 Tax=Phy... [more]
K3W9Y0_GLOUD1.870e-6958.58tRNA-binding domain-containing protein n=1 Tax=Glo... [more]
D0MS46_PHYIT4.260e-6958.58tRNA-binding domain-containing protein n=11 Tax=Ph... [more]
A0A8K1CBM3_PYTOL1.360e-6857.54Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BR83_PYTIN3.130e-6859.76Methionine-tRNA ligase, beta subunit n=1 Tax=Pythi... [more]
A0A225VLY1_9STRA1.160e-6756.80Methionine-tRNA ligase, beta subunit n=1 Tax=Phyto... [more]
A0A662WEL3_9STRA1.230e-6758.58tRNA-binding domain-containing protein n=1 Tax=Not... [more]
M4BIG3_HYAAE1.990e-6756.67tRNA-binding domain-containing protein n=1 Tax=Hya... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 20..193
e-value: 2.2E-49
score: 169.5
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 23..188
IPR002547tRNA-binding domainPFAMPF01588tRNA_bindcoord: 30..128
e-value: 2.1E-26
score: 91.9
IPR002547tRNA-binding domainPROSITEPS50886TRBDcoord: 24..130
score: 28.795626
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..21
NoneNo IPR availablePANTHERPTHR11586TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBERcoord: 5..192
NoneNo IPR availablePANTHERPTHR11586:SF40METHIONYL-TRN SYNTHETASEcoord: 5..192
NoneNo IPR availableCDDcd02799tRNA_bind_EMAP-II_likecoord: 23..130
e-value: 7.16004E-50
score: 155.079

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig96contigA-nodosum_M_contig96:517273..527053 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig96.55.2mRNA_A-nodosum_M_contig96.55.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig96 517031..527128 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig96.55.2 ID=prot_A-nodosum_M_contig96.55.2|Name=mRNA_A-nodosum_M_contig96.55.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=194bp
MHPGDAQAINRSTSALSSMGDQPDGTKLDLRVGRITKVWPHETGDKLYCE
EIDVGEDAPRQIASGLVPYYSIDDMKDRRVVVMCNLKARNLKGFKSQGMV
MCAAAALGDGKEHVEFIVPPENVPLGEKLLFDGVSGGPFEPATAAQMEKK
KILERVLPELRTDEEGTVRWRQHALMSSLGPCMAPTARGGAVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR002547tRNA-bd_dom