prot_A-nodosum_M_contig955.4.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig955.4.1
Unique Nameprot_A-nodosum_M_contig955.4.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length170
Homology
BLAST of mRNA_A-nodosum_M_contig955.4.1 vs. uniprot
Match: A0A182GR78_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GR78_AEDAL)

HSP 1 Score: 110 bits (276), Expect = 3.580e-26
Identity = 62/159 (38.99%), Postives = 90/159 (56.60%), Query Frame = 0
Query:   21 DGGTEMVMVVHVDDILVHAKDQATMDRFAAELGQKLKLKDMGDTGYYMGCHIRRNRKAYELKLDQHLYVEEKATKI----------LAASGVPTLSKADEPRNPEEKEEMRNFPYRKAVGALMWTATMTRPDIACSIRAVVRFCKNPGPAHKKAVMKIL 169
            DG T + + ++VDD+L+   D     +    L Q  K+KD+G   + +G  I+RNR+  +L LDQ  Y+EE   +            A SGV  L K+  P+  EE+ EMRN PY++AVG L + A  TRPDIA ++ AV +F  NPG  H +AV +I+
Sbjct:    3 DGETMLFVTIYVDDLLIFTNDGRLKKKLKQFLMQNFKMKDLGPATHCLGIRIKRNRREGKLSLDQQAYIEEIVRRFGMENAYSIATPADSGV-RLEKSMAPKTEEEEMEMRNVPYKEAVGCLSFVAQTTRPDIAFAVNAVSQFSSNPGKPHWEAVKRII 160          
BLAST of mRNA_A-nodosum_M_contig955.4.1 vs. uniprot
Match: G4TZM0_SERID (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TZM0_SERID)

HSP 1 Score: 106 bits (265), Expect = 1.410e-24
Identity = 55/154 (35.71%), Postives = 91/154 (59.09%), Query Frame = 0
Query:   25 EMVMVVHVDDILVHAKDQATMDRFAAELGQKLKLKDMGDTGYYMGCHIRRNRKAYELKLDQHLYVEE--KATKILAASGV-------PTLSKADEPRNPEEKEEMRNFPYRKAVGALMWTATMTRPDIACSIRAVVRFCKNPGPAHKKAVMKIL 169
            ++++ VHVDD+L+ +K    +     EL  + K+ D G T + +G  + R+R+++ + L Q  Y+E+  +  K+   +G        P LS  D P+  +EK EMRN PYR+A+G L++ AT TRPDI+ ++  +  F KNPG AH  A+ ++L
Sbjct:   66 KIIVPVHVDDLLLASKSSEAIQMVKDELKARFKIHDQGPTSFLLGVKLERDRQSHTISLSQPAYIEQILETYKMQDCNGADTPMAEKPLLSTKDSPQTEQEKLEMRNVPYREALGKLIYLATATRPDISYAVGVLCWFSKNPGQAHWLALKRVL 219          
BLAST of mRNA_A-nodosum_M_contig955.4.1 vs. uniprot
Match: A0A182HAB7_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAB7_AEDAL)

HSP 1 Score: 104 bits (260), Expect = 2.210e-23
Identity = 55/178 (30.90%), Postives = 98/178 (55.06%), Query Frame = 0
Query:    1 MTAIGLEQAKVGLCVFRKVVDGGTEMVMVVHVDDILVHAKDQATMDRFAAELGQKLKLKDMGDTGYYMGCHIRRNRKAYELKLDQHLYVEEKATKILAASGVPT---------LSKADEPRNPEEKEEMRNFPYRKAVGALMWTATMTRPDIACSIRAVVRFCKNPGPAHKKAVMKIL 169
            + A GL ++ +  C++  + + G  + + ++VDD LV   D+    +    L  + K+K++G+  + +G  I R+R   +L LDQ  Y+++   +    +  P          L K+  P+ PEE  EM+N P+++AVG+L++ A  TRPDIA ++  V +F  NPG  H +AV +I+
Sbjct:   70 LKAFGLIRSNLDPCLYFILKEDGKMLFVTIYVDDFLVFTNDEELKKKLKCYLNSRFKMKNIGEAKFCLGLQITRDRTNGKLFLDQQAYIKDVLKRFNMENSKPVATPMDSNVKLDKSRGPKTPEEMAEMKNVPFKEAVGSLLYAAQATRPDIAFAVNLVSQFSINPGRQHWEAVKRIM 247          
BLAST of mRNA_A-nodosum_M_contig955.4.1 vs. uniprot
Match: A0A438K5H3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438K5H3_VITVI)

HSP 1 Score: 105 bits (263), Expect = 2.380e-23
Identity = 61/166 (36.75%), Postives = 90/166 (54.22%), Query Frame = 0
Query:   14 CVFRKVVDGGTEMVMVVHVDDILVHAKDQATMDRFAAELGQKLKLKDMGDTGYYMGCHIRRNRKAYELKLDQHLYVE----------EKATKILAASGVPTLSKADEPRNPEEKEEMRNFPYRKAVGALMWTATMTRPDIACSIRAVVRFCKNPGPAHKKAVMKIL 169
            CV+++   G T + +V++VDDIL+   D   M      L ++  +KD+G+  Y +G  I R+R    L L Q +Y++           K   +   +GV TLS+ D P+ PEE+E M   PY  AVGA+M+T T TRPD+A ++    R+  NPG  H K V  IL
Sbjct:  490 CVYKRF-SGSTIIFLVLYVDDILLIGNDIPAMQGTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPGEEHWKVVKTIL 653          
BLAST of mRNA_A-nodosum_M_contig955.4.1 vs. uniprot
Match: A0A438JH99_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JH99_VITVI)

HSP 1 Score: 105 bits (263), Expect = 2.490e-23
Identity = 61/166 (36.75%), Postives = 90/166 (54.22%), Query Frame = 0
Query:   14 CVFRKVVDGGTEMVMVVHVDDILVHAKDQATMDRFAAELGQKLKLKDMGDTGYYMGCHIRRNRKAYELKLDQHLYVE----------EKATKILAASGVPTLSKADEPRNPEEKEEMRNFPYRKAVGALMWTATMTRPDIACSIRAVVRFCKNPGPAHKKAVMKIL 169
            CV+++   G T + +V++VDDIL+   D   M      L ++  +KD+G+  Y +G  I R+R    L L Q +Y++           K   +   +GV TLS+ D P+ PEE+E M   PY  AVGA+M+T T TRPD+A ++    R+  NPG  H K V  IL
Sbjct:  884 CVYKRF-SGSTIIFLVLYVDDILLIGNDIPAMQGTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPGEEHWKVVKTIL 1047          
BLAST of mRNA_A-nodosum_M_contig955.4.1 vs. uniprot
Match: A0A0J7KUH3_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KUH3_LASNI)

HSP 1 Score: 100 bits (248), Expect = 1.300e-22
Identity = 56/173 (32.37%), Postives = 92/173 (53.18%), Query Frame = 0
Query:    6 LEQAKVGLCVFRKVVDGGTEMVMVVHVDDILVHAKDQATMDRFAAELGQKLKLKDMGDTGYYMGCHIRRNRKAYELKLDQHLYVEEKATKILAASGVPT---------LSKADEPRNPEEKEEMRNFPYRKAVGALMWTATMTRPDIACSIRAVVRFCKNPGPAHKKAVMKIL 169
            L Q+K   C++ +       +V+ ++VDD+ V   D A MD   A L ++ ++ D+G+  +++G  I +N    EL LDQ  Y+ +   +   +   P          L+K   P +  E +EMRN PYR+A+G+L++ +   RPDIA ++  V RFC+ P   H  AV +IL
Sbjct:   64 LIQSKANPCIYYRKTKSFL-LVLDIYVDDMFVLTNDDAMMDAVKARLSEQFRMTDLGEARHFLGIRISKNEATGELYLDQETYLRKVLERYGMSDCKPVSTPCDPNQKLTKKQMPMDSAEAKEMRNVPYREAIGSLLYASQGARPDIAYAVNLVSRFCQEPRRIHWTAVKRIL 235          
BLAST of mRNA_A-nodosum_M_contig955.4.1 vs. uniprot
Match: A0A6H5K1V1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V1_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.850e-22
Identity = 58/173 (33.53%), Postives = 91/173 (52.60%), Query Frame = 0
Query:    5 GLEQAKVGLCVFRKVVDGGTEMVMVVHVDDILVHAKDQATMDRFAAELGQKLKLKDMGDTGYYMGCHIRRNRKAYELKLDQHLYVEEKA--------TKILAASGVPTLSKADEPRNPEEKEEMRNFPYRKAVGALMWTATMTRPDIACSIRAVVRFCKNPGPAHKKAVMKIL 169
            G EQ K   CVFRK+VD    M++V+HVDDILV   D+   +   A   ++   K++G+  ++ GC I R+  A  LK+ Q  Y++           ++I A+ GV    K D+       E+   +P R+ +G++MW +T +RPD+  ++R V R    P   H  A+ KIL
Sbjct:  477 GFEQCKADPCVFRKMVDEVVVMIIVIHVDDILVAGSDE-DCEELLASFNKRFPSKNLGECEWFDGCAIERDVDAGALKISQTAYIDSMVKRFDVQWTSRIPASPGVDLGPKRDD-------EKAGEWPVRETIGSMMWVSTFSRPDVLFAVRGVARHAHAPAKRHWDAIQKIL 641          
BLAST of mRNA_A-nodosum_M_contig955.4.1 vs. uniprot
Match: A0A2P6R3C5_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R3C5_ROSCH)

HSP 1 Score: 101 bits (251), Expect = 9.550e-22
Identity = 63/182 (34.62%), Postives = 99/182 (54.40%), Query Frame = 0
Query:    1 MTAIGLEQAKVGLCVFRKVVDGGTEMVMVVHVDDILVHAKDQATMDRFAAELGQKLKLKDMGDTGYYMGCHIRRNRKAYELKLDQHLYVEEKATKIL--------AASGVPT-----LSKADEPRNPEEKEEMRNFPYRKAVGALMWTATMTRPDIACSIRAVVRFCKNPGPAHKKAVMKIL 169
            +++ G  +  V  CV+ KV  G   + +V++VDDIL+ + + A ++     L     +KD+G+  Y +G  I+R+RK + L L Q  Y+    TKIL        + + VP      L+K + P    E+EEM+N PY + VG+LM+    TRPD+A ++  + RF  NPG AH  A  K+L
Sbjct:  397 ISSFGFVENMVDECVYMKV-SGSQFIFLVLYVDDILLASSNFALLNETKKFLSMNFDMKDLGEASYVLGIEIKRDRKKHLLGLSQQSYI----TKILRRFEMQNCSGNDVPMAKGDKLTKLETPMTELEREEMKNKPYSRLVGSLMYAQVCTRPDLAFAVGMLARFQSNPGNAHWIAGKKVL 573          
BLAST of mRNA_A-nodosum_M_contig955.4.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR)

HSP 1 Score: 100 bits (250), Expect = 9.790e-22
Identity = 58/165 (35.15%), Postives = 92/165 (55.76%), Query Frame = 0
Query:   14 CVFRKVVDGGTEMVMVVHVDDILVHAKDQATMDRFAAELGQKLKLKDMGDTGYYMGCHIRRNRKAYELKLDQHLYVE--------EKATKILAASGVP-TLSKADEPRNPEEKEEMRNFPYRKAVGALMWTATMTRPDIACSIRAVVRFCKNPGPAHKKAVMKIL 169
            CV++K+  G + + +V++VDDIL+   D  +M      L ++  +KD+G+  Y +G  I R+R    L L Q +Y++        EK+ +     G+  +LS+ + P+  EE+E M   PY  AVGA+M+T T TRPD+A ++    R+  NPG  H K V  IL
Sbjct:  273 CVYKKI-SGSSIIFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGVSLSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRYQANPGEEHWKVVKTIL 436          
BLAST of mRNA_A-nodosum_M_contig955.4.1 vs. uniprot
Match: A0A182HAB6_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAB6_AEDAL)

HSP 1 Score: 97.8 bits (242), Expect = 2.780e-21
Identity = 50/153 (32.68%), Postives = 85/153 (55.56%), Query Frame = 0
Query:   26 MVMVVHVDDILVHAKDQATMDRFAAELGQKLKLKDMGDTGYYMGCHIRRNRKAYELKLDQHLYVEEKATKILAASGVPT---------LSKADEPRNPEEKEEMRNFPYRKAVGALMWTATMTRPDIACSIRAVVRFCKNPGPAHKKAVMKIL 169
            + + ++VDD LV  KD+    +    L  + K+K++G+  + +G  I  +R   +L LDQ  Y+++   +    +  P          L K+  P+ PEE  EM+N P+++AVG+L++ A  TRPDIA ++  V +F  NPG  H +AV +I+
Sbjct:    2 LFVTIYVDDFLVFTKDEELKKKLKCYLNSRFKMKNIGEAKFCLGLQITHDRTNGKLFLDQQAYIKDVLKRFNMENSKPVATPMDSNVKLDKSRGPKTPEEMAEMKNVPFKEAVGSLLYAAQATRPDIAFAVNLVSQFSINPGRQHWEAVKRIM 154          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig955.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182GR78_AEDAL3.580e-2638.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
G4TZM0_SERID1.410e-2435.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182HAB7_AEDAL2.210e-2330.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438K5H3_VITVI2.380e-2336.75Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JH99_VITVI2.490e-2336.75Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7KUH3_LASNI1.300e-2232.37Retrovirus-related pol polyprotein from transposon... [more]
A0A6H5K1V1_9PHAE3.850e-2233.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P6R3C5_ROSCH9.550e-2234.62Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2K3MAN7_TRIPR9.790e-2235.15Retrotransposon protein putative Ty1-copia subclas... [more]
A0A182HAB6_AEDAL2.780e-2132.68Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 6..89
e-value: 2.7E-9
score: 37.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig955contigA-nodosum_M_contig955:243033..243542 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig955.4.1mRNA_A-nodosum_M_contig955.4.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig955 242925..243785 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig955.4.1 ID=prot_A-nodosum_M_contig955.4.1|Name=mRNA_A-nodosum_M_contig955.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=170bp
MTAIGLEQAKVGLCVFRKVVDGGTEMVMVVHVDDILVHAKDQATMDRFAA
ELGQKLKLKDMGDTGYYMGCHIRRNRKAYELKLDQHLYVEEKATKILAAS
GVPTLSKADEPRNPEEKEEMRNFPYRKAVGALMWTATMTRPDIACSIRAV
VRFCKNPGPAHKKAVMKIL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2