prot_A-nodosum_M_contig950.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig950.1.1
Unique Nameprot_A-nodosum_M_contig950.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length218
Homology
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BLAST of mRNA_A-nodosum_M_contig950.1.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.180e-5
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 0 
Query:    1 MVNVYSRKCRTEGCGKQPCFGLAGTKTAEYCAQHALNGMV 40
            MV+V S++C   GC K+P +G  G+K AE CAQHAL GMV
Sbjct:    1 MVDVVSKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
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BLAST of mRNA_A-nodosum_M_contig950.1.1 vs. uniprot
Match: A0A6H5LBM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBM3_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 4.010e-5
Identity = 21/42 (50.00%), Postives = 32/42 (76.19%), Query Frame = 0 
Query:    1 MVNVYS-RKCRTEGCGKQPCFGLAGTKTAEYCAQHALNGMVN 41
            MV++++ R+C  E C K P +G+ GT+ AE+CA HAL+GMV+
Sbjct:    8 MVDIHNIRRCAHEDCVKHPTYGVPGTRKAEFCAPHALDGMVS 49
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig950.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUJ6_ECTSI1.180e-557.50EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5LBM3_9PHAE4.010e-550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D6.10.140.110coord: 25..88
e-value: 2.5E-7
score: 32.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..180
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..181
IPR043822EsV-1-7 cysteine-rich motifPFAMPF19114EsV_1_7_cyscoord: 53..79
e-value: 0.0046
score: 17.6
coord: 9..41
e-value: 1.2E-5
score: 25.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig950contigA-nodosum_M_contig950:49802..51118 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig950.1.1mRNA_A-nodosum_M_contig950.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig950 49760..51427 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig950.1.1 ID=prot_A-nodosum_M_contig950.1.1|Name=mRNA_A-nodosum_M_contig950.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=218bp
MVNVYSRKCRTEGCGKQPCFGLAGTKTAEYCAQHALNGMVNFCKMMGETE
SGKKASFGMTGTKKAKNCAQHALNEMVDVCSSKCRTEGCGKGLSYGVAIT
RTSEYCTQYARLKCGVEGYTEGEVDPHRSGKKNIGKILPNGVKYQTFHPP
ATPSPPSEGSQGSRKRVRYPETTSTASMRPISRELAGGAGTMLDNDDFFF
HFISYKCGSSLNCLYCT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR043822EsV_1_7_cys