mRNA_A-nodosum_M_contig950.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig950.1.1
Unique NamemRNA_A-nodosum_M_contig950.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig950.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig950contigA-nodosum_M_contig950:49760..51427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LD34
Model size1005
Max annot lvl2880.D8LD34|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000409
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size654
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870450.420907-UTR-A-nodosum_M_contig950:49759..498011680870450.420907-UTR-A-nodosum_M_contig950:49759..49801Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig950 49760..49801 +
1680870450.4591994-UTR-A-nodosum_M_contig950:51118..514271680870450.4591994-UTR-A-nodosum_M_contig950:51118..51427Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig950 51119..51427 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870450.43626-CDS-A-nodosum_M_contig950:49801..503911680870450.43626-CDS-A-nodosum_M_contig950:49801..50391Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig950 49802..50391 +
1680870450.448536-CDS-A-nodosum_M_contig950:51054..511181680870450.448536-CDS-A-nodosum_M_contig950:51054..51118Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig950 51055..51118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig950.1.1prot_A-nodosum_M_contig950.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig950 49802..51118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig950.1.1

>prot_A-nodosum_M_contig950.1.1 ID=prot_A-nodosum_M_contig950.1.1|Name=mRNA_A-nodosum_M_contig950.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=218bp
MVNVYSRKCRTEGCGKQPCFGLAGTKTAEYCAQHALNGMVNFCKMMGETE
SGKKASFGMTGTKKAKNCAQHALNEMVDVCSSKCRTEGCGKGLSYGVAIT
RTSEYCTQYARLKCGVEGYTEGEVDPHRSGKKNIGKILPNGVKYQTFHPP
ATPSPPSEGSQGSRKRVRYPETTSTASMRPISRELAGGAGTMLDNDDFFF
HFISYKCGSSLNCLYCT*
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mRNA from alignment at A-nodosum_M_contig950:49760..51427+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig950.1.1 ID=mRNA_A-nodosum_M_contig950.1.1|Name=mRNA_A-nodosum_M_contig950.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1668bp|location=Sequence derived from alignment at A-nodosum_M_contig950:49760..51427+ (Ascophyllum nodosum dioecious)
ACGAAAACTGTTGAGTACTGTGCACAGCACGCACTAGACGGGATGGTCAA
CGTCTACAGCAGGAAGTGCAGAACCGAAGGCTGTGGCAAGCAACCGTGTT
TCGGATTGGCAGGTACGAAAACTGCGGAGTACTGTGCACAGCACGCACTA
AACGGGATGGTCAACTTCTGTAAGATGATGGGCGAAACCGAAAGCGGCAA
GAAGGCTTCCTTCGGGATGACAGGAACAAAAAAGGCGAAGAATTGTGCAC
AGCACGCCCTGAACGAGATGGTCGACGTCTGCAGCAGCAAGTGCAGAACC
GAAGGCTGCGGAAAGGGGCTGTCGTATGGAGTCGCCATCACAAGGACGTC
GGAATACTGTACACAGTACGCCAGACTAAAATGCGGTGTCGAAGGATACA
CGGAGGGAGAGGTTGACCCACACCGTTCCGGGAAGAAAAACATTGGTAAG
ATACTTCCGAATGGCGTTAAATATCAAACCTTTCATCCTCCTGCCACCCC
AAGCCCTCCTTCGGAAGGTAGCCAGGGCTCTCGTAAGCGAGTACGTTACC
CAGAAACTACGTCTACGGCCTCGATGCGACCTATCTCACGAGAGTTGGCT
GGAGGAGCGGGGACTATGCTGGATAATGACGAGCAAAAATCTCCCGTCGA
ACGAGATGCTTCTGTGAAGGCCGAGGTGCTGCTCTCCTTGTAGCCAGGTA
CATTATACGTGACCTTAAGATCTATCGGCTTAATATTAGTTTTTATACCC
TTGTCATTGTCTTCCTCCCCTGAGCAGTATTTCGCTGCTTATAGGACTGC
CTTTCTTGCGTAGCCTGCTGACGGTGTTTTTCTTCCCTACGCGTATCGTG
TGGTTGACTTTTGTTTGTTTCTTCAGTTTTTTCTTTTGGGTGTGTTTTTG
TTTCTTGTTGTTTATCTACTTTTACTCTGTGTCTGCTTTTCCTGCTTTTT
TTCTCCGAATGTGTTCCTGGTTTGGTTTGGTTCGGTGTCGCCTATCTTGT
GACCACGGCTGGATTCGTAGCGGATCAGTCAATGTGTTCATGAATCTCGC
GCTGTGTTTCGTCGCAAGGCTGTGAGTTCAGCTCAAGGGCACCTCTTCCT
CTTAGACCCTCGAGACCTTGCAGCTGCAGCTACAGCCTTCATGTCACTTG
TGCTTAGCCCCAAGGCCTTGTTCTCCCGTTCCCTCGTCTTTCGAACTCAG
GTACTGAGGTCAAGAGCGTGGTCACGATATGTATTCTATAGCCGCCAAAA
TCCTGATGAGTTTGGTGAGGGTCCTACCGTGCGTACCTCCGGAAGTTTTT
TTTTTCACTTCATATCATATAAGTGTGGTTCATCCTTGAACTGCCTGTAC
TGTACTTAAGCAGTCCAGGTGTAGCGAAAAATGTACGGGCCTCAGGATGA
TGTTACGGAGGATGACCACCTGAACTCTTTGGCCGCCCCGATTTCGATTT
CGAGGAGGGCGAGCGTTTGTGTTTGGTAGAGCGGTCGTCACGAATGCGCA
CTTGTCTGACAATTTAATGAGCAGGCAACTATACTGCCGAAGTTCAGCTA
CGAAATAGGCCCGCATCGTATGGATAGGGGTGACTGATGGAGTGATTACA
CGATTTTGCGATAGGGGCTAAATAATTTGATCTTATAACTCGATACTGTT
TCCGTGTTGTTCTCATAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig950:49760..51427+

>mRNA_A-nodosum_M_contig950.1.1 ID=mRNA_A-nodosum_M_contig950.1.1|Name=mRNA_A-nodosum_M_contig950.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at A-nodosum_M_contig950:49760..51427+ (Ascophyllum nodosum dioecious)
ATGGTCAACGTCTACAGCAGGAAGTGCAGAACCGAAGGCTGTGGCAAGCA
ACCGTGTTTCGGATTGGCAGGTACGAAAACTGCGGAGTACTGTGCACAGC
ACGCACTAAACGGGATGGTCAACTTCTGTAAGATGATGGGCGAAACCGAA
AGCGGCAAGAAGGCTTCCTTCGGGATGACAGGAACAAAAAAGGCGAAGAA
TTGTGCACAGCACGCCCTGAACGAGATGGTCGACGTCTGCAGCAGCAAGT
GCAGAACCGAAGGCTGCGGAAAGGGGCTGTCGTATGGAGTCGCCATCACA
AGGACGTCGGAATACTGTACACAGTACGCCAGACTAAAATGCGGTGTCGA
AGGATACACGGAGGGAGAGGTTGACCCACACCGTTCCGGGAAGAAAAACA
TTGGTAAGATACTTCCGAATGGCGTTAAATATCAAACCTTTCATCCTCCT
GCCACCCCAAGCCCTCCTTCGGAAGGTAGCCAGGGCTCTCGTAAGCGAGT
ACGTTACCCAGAAACTACGTCTACGGCCTCGATGCGACCTATCTCACGAG
AGTTGGCTGGAGGAGCGGGGACTATGCTGGATAATGACGATTTTTTTTTT
CACTTCATATCATATAAGTGTGGTTCATCCTTGAACTGCCTGTACTGTAC
TTAA
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