prot_A-nodosum_M_contig9475.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9475.1.1
Unique Nameprot_A-nodosum_M_contig9475.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length53
Homology
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5KWH4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWH4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 6.220e-11
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRF 46
            NVRH+FLR+LV + +I+V HVPS YQ ADILTK L  D F  HR F
Sbjct:   36 NVRHHFLRELVERKEILVIHVPSPYQRADILTKSLPKDTFESHRDF 81          
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.420e-10
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRFL 47
            +VRH+FLR L  +G I V HVPSE QHADILTK L  DLF +HR F+
Sbjct:  278 DVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFV 324          
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.790e-10
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRFL 47
            +VRH+FLR L  +G I V HVPSE QHADILTK L  DLF +HR F+
Sbjct:  444 DVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFV 490          
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.820e-10
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRF 46
            +VRH+FLR L  +G I V HVPSE QHADILTK L  DLF +HR F
Sbjct:  909 DVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDF 954          
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.820e-10
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRF 46
            +VRH+FLR L  +G I V HVPSE QHADILTK L  DLF +HR F
Sbjct: 1176 DVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDF 1221          
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 5.000e-10
Identity = 25/51 (49.02%), Postives = 40/51 (78.43%), Query Frame = 0
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRFLTNLS 51
            +VRH+F+R+LV + +I + HVP+++QHAD LTK ++ + FA+HR F+ NL 
Sbjct:  326 DVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNLQ 376          
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5K3N0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3N0_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 7.390e-10
Identity = 25/51 (49.02%), Postives = 40/51 (78.43%), Query Frame = 0
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRFLTNLS 51
            +VRH+ +R+LV + +I + HVP+++QHAD LTKV++ + FA+HR F+ NL 
Sbjct:  238 DVRHHIIRELVERKEISITHVPTQFQHADFLTKVISKESFALHRDFVMNLQ 288          
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5K826_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K826_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 8.370e-10
Identity = 24/51 (47.06%), Postives = 38/51 (74.51%), Query Frame = 0
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRFLTNLS 51
            +VRH+F+R+LV + +I + HVP+++QHAD LTK +  +  A+HR F+ NL 
Sbjct:   53 DVRHHFIRELVERKEISITHVPTQFQHADFLTKAICKEPCALHRDFVMNLQ 103          
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5KHH9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHH9_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.330e-9
Identity = 25/50 (50.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRFLTNL 50
            +VRH+F+R+LV + +I + HVP+++QHAD LTK +  + FA+HR F+ NL
Sbjct:  626 DVRHHFIRELVERKEISITHVPTQFQHADFLTKAIRKESFALHRDFVMNL 675          
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5JGN8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGN8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.360e-9
Identity = 24/49 (48.98%), Postives = 39/49 (79.59%), Query Frame = 0
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRFLTN 49
            +VRH+F+R+LV + +I + HVP+++QHAD LTK ++ + FA+HR F+ N
Sbjct:  367 DVRHHFIRELVERKEISITHVPTQFQHADSLTKAISKESFALHRDFVMN 415          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWH4_9PHAE6.220e-1163.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KBM6_9PHAE2.420e-1063.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9B2_9PHAE2.790e-1063.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE3.820e-1065.22Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE3.820e-1065.22Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L4G9_9PHAE5.000e-1049.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3N0_9PHAE7.390e-1049.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K826_9PHAE8.370e-1047.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHH9_9PHAE1.330e-950.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JGN8_9PHAE3.360e-948.98Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9475contigA-nodosum_M_contig9475:12349..12507 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9475.1.1mRNA_A-nodosum_M_contig9475.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9475 12349..12507 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9475.1.1 ID=prot_A-nodosum_M_contig9475.1.1|Name=mRNA_A-nodosum_M_contig9475.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=53bp
NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRFLTNL
SD*
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