prot_A-nodosum_M_contig945.2.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig945.2.1
Unique Nameprot_A-nodosum_M_contig945.2.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length108
Homology
BLAST of mRNA_A-nodosum_M_contig945.2.1 vs. uniprot
Match: A0A7S1C0F8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C0F8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.090e-6
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 0
Query:   19 TAGGTTASSAVVHSTGCGS-KSACLQRYCECFSLGITCSNKCNCSNCKNKAAA 70
            T+ G+ ++    H  GC   KSACL++YCECF++G+ CS  C C NC+N+  A
Sbjct:  362 TSAGSRSTKTGAHKVGCKCRKSACLKKYCECFNMGVKCSQNCRCINCQNEDPA 414          
BLAST of mRNA_A-nodosum_M_contig945.2.1 vs. uniprot
Match: A0A7S2PT71_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PT71_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.470e-5
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 0
Query:   29 VVHSTGCG-SKSACLQRYCECFSLGITCSNKCNCSNCKN 66
              H+TGC   KSACL++YCECF+ G+ C   C C  CKN
Sbjct:  357 TAHATGCRCKKSACLKKYCECFTAGVVCGGNCKCEGCKN 395          
BLAST of mRNA_A-nodosum_M_contig945.2.1 vs. uniprot
Match: A0A0V0R9G0_PSEPJ (CRC domain-containing protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0R9G0_PSEPJ)

HSP 1 Score: 51.2 bits (121), Expect = 3.830e-5
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 0
Query:   29 VVHSTGCG-SKSACLQRYCECFSLGITCSNKCNCSNCKNKAA 69
            VV + GC   KS C ++YCEC++ GI CS+KC C+ CKNK A
Sbjct:  595 VVVNKGCNCKKSGCQKKYCECYNSGIQCSDKCKCTECKNKDA 636          
BLAST of mRNA_A-nodosum_M_contig945.2.1 vs. uniprot
Match: A0CAU5_PARTE (CRC domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0CAU5_PARTE)

HSP 1 Score: 49.7 bits (117), Expect = 9.630e-5
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 0
Query:   29 VVHSTGCGS-KSACLQRYCECFSLGITCSNKCNCSNCKN 66
            + HS GC   KS C ++YCEC+ +GI CS+ C C  CKN
Sbjct:  175 MAHSKGCNCRKSGCKKKYCECYQMGIECSDNCKCDGCKN 213          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig945.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S1C0F8_9STRA3.090e-645.28Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2PT71_9STRA1.470e-553.85Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A0V0R9G0_PSEPJ3.830e-554.76CRC domain-containing protein n=1 Tax=Pseudocohnil... [more]
A0CAU5_PARTE9.630e-551.28CRC domain-containing protein n=1 Tax=Paramecium t... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033467Tesmin/TSO1-like CXC domainSMARTSM01114CXC_2coord: 30..70
e-value: 1.0E-5
score: 35.0
IPR005172CRC domainPFAMPF03638TCRcoord: 37..67
e-value: 7.9E-9
score: 35.7
IPR005172CRC domainPROSITEPS51634CRCcoord: 1..69
score: 12.618948
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availablePANTHERPTHR12446:SF34PROTEIN LIN-54 HOMOLOGcoord: 24..74
IPR028307Lin-54 familyPANTHERPTHR12446TESMIN/TSO1-RELATEDcoord: 24..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig945contigA-nodosum_M_contig945:49937..50260 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig945.2.1mRNA_A-nodosum_M_contig945.2.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig945 49937..50262 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig945.2.1 ID=prot_A-nodosum_M_contig945.2.1|Name=mRNA_A-nodosum_M_contig945.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=108bp
SHNPPIRGKRPRPRQAHATAGGTTASSAVVHSTGCGSKSACLQRYCECFS
LGITCSNKCNCSNCKNKAAAGRTRTGPGIGAGEGKLDARTVDTMSSTTPR
PPTTAVKT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033467Tesmin/TSO1-like_CXC
IPR005172CRC
IPR028307Lin-54_fam