prot_A-nodosum_M_contig942.11.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig942.11.2
Unique Nameprot_A-nodosum_M_contig942.11.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length132
Homology
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BLAST of mRNA_A-nodosum_M_contig942.11.2 vs. uniprot
Match: D8LGJ5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ5_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 8.970e-31
Identity = 63/97 (64.95%), Postives = 74/97 (76.29%), Query Frame = 0 
Query:    5 GITEMDIVLKLEATHGLGLDKFTALHTLVLSNNQLQTLDFTVLNAMPALRHLDVSNNVLRRMEPADGQDLPPRLETLIMSHNNIPRISGIGRCCALR 101
            G+++M  VL+LEA +G G +    LHTLVLS NQLQ LD +VL  MPALRHLDVS+N+L RMEP DG+DLPPRLETL MSHN I RI GI +C  LR
Sbjct: 1062 GLSKMSTVLQLEAVYGYGRESLIGLHTLVLSYNQLQVLDISVLTTMPALRHLDVSHNLLCRMEPMDGRDLPPRLETLNMSHNRISRIGGIAQCFLLR 1158
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BLAST of mRNA_A-nodosum_M_contig942.11.2 vs. uniprot
Match: A0A6H5JAS8_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAS8_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 5.720e-30
Identity = 62/97 (63.92%), Postives = 73/97 (75.26%), Query Frame = 0 
Query:    5 GITEMDIVLKLEATHGLGLDKFTALHTLVLSNNQLQTLDFTVLNAMPALRHLDVSNNVLRRMEPADGQDLPPRLETLIMSHNNIPRISGIGRCCALR 101
            G+ +M  +L+LEA +G G +    LHTLVLS NQLQ LD +VL  MPALRHLDVS+N+L RMEP DG+DLPPRLETL MSHN I RI GI +C  LR
Sbjct: 1212 GLAKMSTLLQLEAVYGCGRESLIGLHTLVLSYNQLQVLDISVLTTMPALRHLDVSHNLLCRMEPMDGRDLPPRLETLNMSHNRISRIGGITQCFLLR 1308
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig942.11.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGJ5_ECTSI8.970e-3164.95Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JAS8_9PHAE5.720e-3063.92EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 50..73
e-value: 4.8
score: 15.9
coord: 26..49
e-value: 14.0
score: 12.0
coord: 76..97
e-value: 160.0
score: 3.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 2..122
e-value: 1.0E-20
score: 75.4
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 28..88
e-value: 3.6E-11
score: 42.6
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 77..98
score: 7.54254
NoneNo IPR availablePANTHERPTHR15454NISCHARIN RELATEDcoord: 2..111
NoneNo IPR availableSUPERFAMILY52075Outer arm dynein light chain 1coord: 23..113

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig942contigA-nodosum_M_contig942:21471..22690 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig942.11.2mRNA_A-nodosum_M_contig942.11.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig942 21012..22704 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig942.11.2 ID=prot_A-nodosum_M_contig942.11.2|Name=mRNA_A-nodosum_M_contig942.11.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=132bp
MSCNGITEMDIVLKLEATHGLGLDKFTALHTLVLSNNQLQTLDFTVLNAM
PALRHLDVSNNVLRRMEPADGQDLPPRLETLIMSHNNIPRISGIGRCCAL
RVINLSFNRIQGAQGTCGLKQKRDGASRIGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt