mRNA_A-nodosum_M_contig942.11.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig942.11.2
Unique NamemRNA_A-nodosum_M_contig942.11.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig942.11.2 vs. uniprot
Match: A0A6H5JAS8_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAS8_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 5.570e-32
Identity = 68/112 (60.71%), Postives = 86/112 (76.79%), Query Frame = 1 
Query:  427 VQVQLDEGSLVMSCNGITEMDIVLKLEATHGLGLDKFTALHTLVLSNNQLQTLDFTVLNAMPALRHLDVSNNVLRRMEPADGQDLPPRLETLIMSHNNIPRISGIGRCCALR 762
            VQ++++EG+LV++  G+ +M  +L+LEA +G G +    LHTLVLS NQLQ LD +VL  MPALRHLDVS+N+L RMEP DG+DLPPRLETL MSHN I RI GI +C  LR
Sbjct: 1197 VQLRINEGALVITRAGLAKMSTLLQLEAVYGCGRESLIGLHTLVLSYNQLQVLDISVLTTMPALRHLDVSHNLLCRMEPMDGRDLPPRLETLNMSHNRISRIGGITQCFLLR 1308
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BLAST of mRNA_A-nodosum_M_contig942.11.2 vs. uniprot
Match: D8LGJ5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ5_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 7.800e-32
Identity = 67/110 (60.91%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:  433 VQLDEGSLVMSCNGITEMDIVLKLEATHGLGLDKFTALHTLVLSNNQLQTLDFTVLNAMPALRHLDVSNNVLRRMEPADGQDLPPRLETLIMSHNNIPRISGIGRCCALR 762
            ++++EG+LV++  G+++M  VL+LEA +G G +    LHTLVLS NQLQ LD +VL  MPALRHLDVS+N+L RMEP DG+DLPPRLETL MSHN I RI GI +C  LR
Sbjct: 1049 LRINEGALVITRTGLSKMSTVLQLEAVYGYGRESLIGLHTLVLSYNQLQVLDISVLTTMPALRHLDVSHNLLCRMEPMDGRDLPPRLETLNMSHNRISRIGGIAQCFLLR 1158
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig942.11.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAS8_9PHAE5.570e-3260.71EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LGJ5_ECTSI7.800e-3260.91Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig942contigA-nodosum_M_contig942:21012..22704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LGJ5
PFAMsIQ,LRR_4,LRR_8
Model size869
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.47e-31
EggNOG OGsCOG4886@1|root,KOG0531@2759|Eukaryota
Descriptionaxoneme assembly
Cds size396
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870438.4218094-UTR-A-nodosum_M_contig942:21011..214701680870438.4218094-UTR-A-nodosum_M_contig942:21011..21470Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig942 21012..21470 +
1680870438.467547-UTR-A-nodosum_M_contig942:22690..227041680870438.467547-UTR-A-nodosum_M_contig942:22690..22704Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig942 22691..22704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870438.4341576-CDS-A-nodosum_M_contig942:21470..215901680870438.4341576-CDS-A-nodosum_M_contig942:21470..21590Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig942 21471..21590 +
1680870438.444801-CDS-A-nodosum_M_contig942:21930..221431680870438.444801-CDS-A-nodosum_M_contig942:21930..22143Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig942 21931..22143 +
1680870438.4550924-CDS-A-nodosum_M_contig942:22627..226901680870438.4550924-CDS-A-nodosum_M_contig942:22627..22690Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig942 22628..22690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig942.11.2prot_A-nodosum_M_contig942.11.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig942 21471..22690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig942.11.2

>prot_A-nodosum_M_contig942.11.2 ID=prot_A-nodosum_M_contig942.11.2|Name=mRNA_A-nodosum_M_contig942.11.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=132bp
MSCNGITEMDIVLKLEATHGLGLDKFTALHTLVLSNNQLQTLDFTVLNAM
PALRHLDVSNNVLRRMEPADGQDLPPRLETLIMSHNNIPRISGIGRCCAL
RVINLSFNRIQGAQGTCGLKQKRDGASRIGG*
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mRNA from alignment at A-nodosum_M_contig942:21012..22704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig942.11.2 ID=mRNA_A-nodosum_M_contig942.11.2|Name=mRNA_A-nodosum_M_contig942.11.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1693bp|location=Sequence derived from alignment at A-nodosum_M_contig942:21012..22704+ (Ascophyllum nodosum dioecious)
CAGCGAGAGTAAGGCGGTCCCACTCTGTGATGCTGCGGGCTCGACGACGT
GGTACACCGGAGTGGGTTCGAGACTCTTTCGTGGCAAGGGAGAGGAAGGA
TGGGCTCGCTCGCGTTTAAAAGAGCTGAAAAACTACAGGAAACGAGGCGC
GAGCGGAGTCGGTGGACGCGCATTTTGGACGGAAGCCGATTGCCCACACG
AAGAGAAGGACCCCAGGGTGAGTGGCGAGAGCAACTTTTTACTGTAGATG
TTTACATCAGCGCTTCACTTGTTTTGGGAATTTTTCGCAAGACCTAACAC
AACGTGTACGAACAAGCGTTCTGCCAAGTGATAAACGGTATTACCGAGCG
GTTGGTACCTTGGAGAAAAAAGTTGAGCCACGATCTACCCTTTGTGACAC
TTACCTCCCACCAGGTCCTTCATCCGGTTCAGGTCCAGCTCGACGAAGGA
TCTCTCGTGATGAGCTGTAATGGTATTACTGAAATGGACATCGTGTTGAA
ACTGGAGGCAACCCACGGGCTTGGCCTTGATAAATTCACAGCCCTGCATA
CGCTCGTGCTCAGCAACAATCAGCTCCAGGTGTCCATACCTCGCTCGTAG
AATAAAAACGGACGAACGCTGACAGCAGCAACCGTTCGTGCTGCGGATGA
CCGGGACAAGTGCGCACTGCGACCCATGAACTGCTCTAAGATCGCTTAGA
TGTGTACATTTCAGTTGCCCTGCCGCCGTAGATCAAGCGAGACCAAGGCA
CTATTGATTATACCGAGGTGTTGTTTTTCTAGAGACAGAACGTCGTTTCC
AAAACTTCCACCTCCTCAGAAAGAGGGGCTAACTTGATGTTTCCTCTTGA
ATCCTCTTGAGCTCTGCTCTCGGACTACAACCCTCTTCGTTTTATCTTAA
CAATCTATCCCCGCTGCAGACACTAGACTTTACGGTCTTAAACGCCATGC
CGGCTCTTCGGCACCTGGACGTCAGCAACAATGTCCTCCGACGGATGGAA
CCGGCGGACGGGCAAGACCTACCCCCGCGACTAGAAACTCTCATAATGAG
CCACAACAACATACCCCGAATAAGCGGAATCGGACGGTGCTGCGCGCTAC
GCGTGATTAACCTCAGCTTCAATCGTATCCAGGTACGACGGACCTACTAT
CGCCTGTTCTTGAACGCTAACGCTGGATACTGGCGCTGCGTTGTAGCCTG
CTGCAGCGAGGTTTGAGACCGTGGACGGCACTAAAGAAAAAAATGGAGTC
GAGACGTAGTTGAGAGTCTGTGACCCTCCTCTTACTCTTATATTTATGCC
TCTCCGCGGCGAGAAGAACTCTAGCTCCTTTCCTTGTTTCGACCCTCGGT
TCTCGTTTTACTGCCTCCTTTCTCTTGGGACTTCAGCGTGTGGCTGGGCT
GGAACACCTCTCCCTTTTGGAACAGCTTGACCTGGGCCACAACCTTATTT
CCACGACTGCCGCTGCGCGTGCCCTGAGCCTCAACATTAACCTTAAGTTC
CTGCGTCTGGAGGGCAACCCAGTCGCTGAACATCCGCGTTACAGGCCGGC
TCTGACCTGCTTATTGCCGCACGTGCGGAATATCGATAGCCGGAGCATGC
CCCCGAGCTTTCACAGGGAGCGCAGGGGACCTGTGGGCTTAAGCAGAAGA
GGGACGGTGCGAGCCGGATCGGGGGGTAATGGACAGGGGGACA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig942:21012..22704+

>mRNA_A-nodosum_M_contig942.11.2 ID=mRNA_A-nodosum_M_contig942.11.2|Name=mRNA_A-nodosum_M_contig942.11.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at A-nodosum_M_contig942:21012..22704+ (Ascophyllum nodosum dioecious)
ATGAGCTGTAATGGTATTACTGAAATGGACATCGTGTTGAAACTGGAGGC
AACCCACGGGCTTGGCCTTGATAAATTCACAGCCCTGCATACGCTCGTGC
TCAGCAACAATCAGCTCCAGACACTAGACTTTACGGTCTTAAACGCCATG
CCGGCTCTTCGGCACCTGGACGTCAGCAACAATGTCCTCCGACGGATGGA
ACCGGCGGACGGGCAAGACCTACCCCCGCGACTAGAAACTCTCATAATGA
GCCACAACAACATACCCCGAATAAGCGGAATCGGACGGTGCTGCGCGCTA
CGCGTGATTAACCTCAGCTTCAATCGTATCCAGGGAGCGCAGGGGACCTG
TGGGCTTAAGCAGAAGAGGGACGGTGCGAGCCGGATCGGGGGGTAA
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