prot_A-nodosum_M_contig941.6.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig941.6.1
Unique Nameprot_A-nodosum_M_contig941.6.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length83
Homology
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5JUC0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC0_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.810e-8
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 0
Query:    9 DAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSEYTNVISYLAHLQVQSAKFDLEAAQEY----VRRAI 82
            D G  S+WF V +G+ QGCVLSPL+FN+FF  +L +V+ RFSE   V+  L  L+    K + E  +E     VRRA+
Sbjct:   33 DDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLE--EGKTEAEGGEETPLDRVRRAV 108          
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5KBR5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR5_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 5.740e-8
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 0
Query:    9 DAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSE 51
            D G  S+WF V +G+ QGCVLSPL+FN+FF  +L +V+ RFSE
Sbjct:   69 DDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSE 111          
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5JCY6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY6_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 6.090e-8
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 0
Query:    9 DAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSEYTNVISYLAHLQV--QSAKFDLEAAQEYVRRAI 82
            D G  S+WF V +G+ QGCVLSPL+FN+FF  +L +V+ RFSE   V+  L  L+     A    E   + VRRA+
Sbjct:   49 DDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAV 124          
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5JNR9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNR9_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 7.840e-8
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    9 DAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSEYTNVISYLAHLQ 63
            D G  S+WF V +G+ QGCVLSPL+FN+FF  +L +V+ RFSE+  V+  L  L+
Sbjct: 1481 DDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEHDVVLGSLVCLE 1535          
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5L732_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L732_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.160e-7
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 0
Query:    9 DAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSEYTNVISYLAHLQV--QSAKFDLEAAQEYVRRAI 82
            D G  S+WF V +G+ QGCVLSPL+FN+FF  +L +V+ RFSE   V+  L  L+     A    E   + VRRA+
Sbjct:   80 DDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAV 155          
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5K1X6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X6_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.410e-7
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 0
Query:    9 DAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSE 51
            D G  S+WF V +G+ QGCVLSPL+FN+FF  +L +V+ RFSE
Sbjct:   69 DDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSE 111          
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5JHV5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV5_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.580e-7
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 0
Query:    9 DAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSEYTNVISYLAHLQVQSAKFD--LEAAQEYVRRAI 82
            D G  S+WF V +G+ QGCVLSPL+FN+FF  +L +V+ RFSE   V+  L  L+    +     E   + VRRA+
Sbjct:   49 DDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGREETPLDRVRRAV 124          
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5JRX8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRX8_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.900e-7
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 0
Query:    9 DAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSEYTNVISYLAHLQV--QSAKFDLEAAQEYVRRAI 82
            D G  S+WF V +G+ QGCVLSPL+FN+FF  +L +V+ R SE   V+  L  L      A+  +E   + VRRA+
Sbjct:   69 DDGELSDWFFVTQGVRQGCVLSPLLFNIFFAKVLEVVVIRLSEDDVVLRSLVCLAEGKTEARGGMETPLDRVRRAV 144          
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5JPX0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX0_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.960e-7
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 0
Query:    9 DAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSEYTNVISYLAHLQVQSAKFDLEAAQEYVRRAI 82
            D G  S WF V +GL QGCVLSPL+F++FF  ++ +V  RFSE   ++  L +L+ ++         + VRRA+
Sbjct:  574 DDGEVSAWFMVTQGLRQGCVLSPLLFSIFFAAVIEVVTIRFSEDDIILENLVYLEEETGA-GASTPLDRVRRAV 646          
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5JZJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.220e-7
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 0
Query:    9 DAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSEYTNVISYLAHLQVQSAKFDLEAAQEY----VRRAI 82
            D G  S+WF + +G+ QGCVLSPL+FN+FF  +L +V+ RFSE   V+  L  L+    + +    +E     VRRA+
Sbjct:   35 DDGELSDWFFMTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTETEAGGGEETPLDRVRRAV 112          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUC0_9PHAE1.810e-844.87Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBR5_9PHAE5.740e-858.14Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JCY6_9PHAE6.090e-844.74Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JNR9_9PHAE7.840e-850.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L732_9PHAE1.160e-744.74Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1X6_9PHAE1.410e-758.14Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHV5_9PHAE1.580e-743.42Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JRX8_9PHAE1.900e-743.42Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JPX0_9PHAE1.960e-740.54Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JZJ9_9PHAE2.220e-741.03Reverse transcriptase domain-containing protein n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..82
score: 9.019111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig941contigA-nodosum_M_contig941:131995..132243 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig941.6.1mRNA_A-nodosum_M_contig941.6.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig941 131983..132658 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig941.6.1 ID=prot_A-nodosum_M_contig941.6.1|Name=mRNA_A-nodosum_M_contig941.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=83bp
MGACVWNGDAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFS
EYTNVISYLAHLQVQSAKFDLEAAQEYVRRAI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom