mRNA_A-nodosum_M_contig941.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig941.6.1
Unique NamemRNA_A-nodosum_M_contig941.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5JUC0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC0_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.330e-7
Identity = 40/91 (43.96%), Postives = 53/91 (58.24%), Query Frame = 2 
Query:  401 QLHARMGACVWNGDAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSEYTNVISYLAHLQVQSAKFDLEAAQEY----VRRAI 661
            Q H  M A V   D G  S+WF V +G+ QGCVLSPL+FN+FF  +L +V+ RFSE   V+  L  L+    K + E  +E     VRRA+
Sbjct:   21 QFHDGMRARV-RMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLE--EGKTEAEGGEETPLDRVRRAV 108
[Close]
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5KBR5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR5_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 8.760e-7
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 2 
Query:  401 QLHARMGACVWNGDAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSE 568
            Q H  M A V   D G  S+WF V +G+ QGCVLSPL+FN+FF  +L +V+ RFSE
Sbjct:   57 QFHDGMRARV-RMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSE 111
[Close]
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5JCY6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY6_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 9.980e-7
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 2 
Query:  401 QLHARMGACVWNGDAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSEYTNVISYLAHLQV--QSAKFDLEAAQEYVRRAI 661
            Q H  M A V   D G  S+WF V +G+ QGCVLSPL+FN+FF  +L +V+ RFSE   V+  L  L+     A    E   + VRRA+
Sbjct:   37 QFHDGMRARV-RMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAV 124
[Close]
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5L732_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L732_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.990e-6
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 2 
Query:  401 QLHARMGACVWNGDAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSEYTNVISYLAHLQV--QSAKFDLEAAQEYVRRAI 661
            Q H  M A V   D G  S+WF V +G+ QGCVLSPL+FN+FF  +L +V+ RFSE   V+  L  L+     A    E   + VRRA+
Sbjct:   68 QFHDGMRARV-RMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAV 155
[Close]
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5K1X6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X6_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.260e-6
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 2 
Query:  401 QLHARMGACVWNGDAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSE 568
            Q H  M A V   D G  S+WF V +G+ QGCVLSPL+FN+FF  +L +V+ RFSE
Sbjct:   57 QFHDGMRARV-RMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSE 111
[Close]
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5JHV5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV5_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 2.660e-6
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 2 
Query:  401 QLHARMGACVWNGDAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSEYTNVISYLAHLQVQSAKFD--LEAAQEYVRRAI 661
            Q H  M A V   D G  S+WF V +G+ QGCVLSPL+FN+FF  +L +V+ RFSE   V+  L  L+    +     E   + VRRA+
Sbjct:   37 QFHDGMRARV-RMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGREETPLDRVRRAV 124
[Close]
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5JHY6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY6_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 3.200e-6
Identity = 39/89 (43.82%), Postives = 50/89 (56.18%), Query Frame = 2 
Query:  401 QLHARMGACVWNGDAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSEYTNVISYLAHLQV--QSAKFDLEAAQEYVRRAI 661
            Q H  M A V   D G  S+WF V +G+ QGCVLSPL+FN+FF   L +V+ RFSE   V+  L  L+     A    E   + VRRA+
Sbjct:   57 QFHDGMRATV-RMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEALEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAV 144
[Close]
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5JRX8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRX8_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.530e-6
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 2 
Query:  401 QLHARMGACVWNGDAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSEYTNVISYLAHLQV--QSAKFDLEAAQEYVRRAI 661
            Q H  M A V   D G  S+WF V +G+ QGCVLSPL+FN+FF  +L +V+ R SE   V+  L  L      A+  +E   + VRRA+
Sbjct:   57 QFHDGMRARV-RMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAKVLEVVVIRLSEDDVVLRSLVCLAEGKTEARGGMETPLDRVRRAV 144
[Close]
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5JZJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ9_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.320e-6
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 2 
Query:  401 QLHARMGACVWNGDAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSEYTNVISYLAHLQVQSAKFDLEAAQEY----VRRAI 661
            Q H  M A V   D G  S+WF + +G+ QGCVLSPL+FN+FF  +L +V+ RFSE   V+  L  L+    + +    +E     VRRA+
Sbjct:   23 QFHDGMRARV-RMDDGELSDWFFMTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTETEAGGGEETPLDRVRRAV 112
[Close]
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Match: A0A6H5JNR9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNR9_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.410e-6
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 2 
Query:  440 DAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFSEYTNVISYLAHLQ 604
            D G  S+WF V +G+ QGCVLSPL+FN+FF  +L +V+ RFSE+  V+  L  L+
Sbjct: 1481 DDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEHDVVLGSLVCLE 1535
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig941.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUC0_9PHAE3.330e-743.96Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBR5_9PHAE8.760e-753.57Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JCY6_9PHAE9.980e-743.82Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L732_9PHAE1.990e-643.82Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1X6_9PHAE2.260e-653.57Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHV5_9PHAE2.660e-642.70Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JHY6_9PHAE3.200e-643.82Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JRX8_9PHAE3.530e-642.70Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JZJ9_9PHAE4.320e-640.66Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JNR9_9PHAE4.410e-650.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig941contigA-nodosum_M_contig941:131983..132658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size676
Hectar predicted targeting categoryother localisation
Exons1
Cds size249
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870436.3170393-UTR-A-nodosum_M_contig941:131982..1319941680870436.3170393-UTR-A-nodosum_M_contig941:131982..131994Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig941 131983..131994 -
1680870436.3380208-UTR-A-nodosum_M_contig941:132243..1326581680870436.3380208-UTR-A-nodosum_M_contig941:132243..132658Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig941 132244..132658 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870436.3277223-CDS-A-nodosum_M_contig941:131994..1322431680870436.3277223-CDS-A-nodosum_M_contig941:131994..132243Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig941 131995..132243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig941.6.1prot_A-nodosum_M_contig941.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig941 131995..132243 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig941.6.1

>prot_A-nodosum_M_contig941.6.1 ID=prot_A-nodosum_M_contig941.6.1|Name=mRNA_A-nodosum_M_contig941.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=83bp
MGACVWNGDAGVCSEWFEVAKGLPQGCVLSPLMFNVFFVVILFIVLERFS
EYTNVISYLAHLQVQSAKFDLEAAQEYVRRAI*
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mRNA from alignment at A-nodosum_M_contig941:131983..132658-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig941.6.1 ID=mRNA_A-nodosum_M_contig941.6.1|Name=mRNA_A-nodosum_M_contig941.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=676bp|location=Sequence derived from alignment at A-nodosum_M_contig941:131983..132658- (Ascophyllum nodosum dioecious)
AATGGCTCTGTGCCGGTGGGCTCTCCGCGGTGAAAGCCATCGGTACGCAA
TTGCGTGACCTGATAAACTCGGGACTGACCCGATCGTGTATGGTGGTTGA
CGGTATTATGGATGGACGCTATTATCTATAGCATGTATGGAAAGCGGGAG
GAAGGAGAGGAGCCCGTAAGTATAAGCACCAGATTCAGCCTGGGTGTGGA
AAATGAACGGACTGGCGCGGGACATGGCAGCCGAATCCGTCTCGCGAGAC
TAAACTCCCAGGCGCGAGCGGGACAGGGAAACAATCAGCTTCCCTGTTTA
GCTGAACAAAAAAAGGATCGGCAATCATACCCGGTTCATGCATAGACTGC
TACTATAAGCGATGACCATACTTACATACTCGGAGTGTCACCGCACATGA
CAACTTCACGCTAGGATGGGAGCTTGCGTGTGGAATGGCGATGCTGGCGT
ATGCTCGGAGTGGTTCGAGGTAGCAAAGGGACTCCCTCAAGGGTGCGTAC
TTTCACCGCTGATGTTCAACGTTTTCTTCGTTGTGATACTCTTCATCGTA
CTAGAGAGATTCAGCGAGTACACGAACGTTATCTCCTACCTTGCCCATCT
TCAAGTTCAATCGGCGAAGTTTGACCTTGAAGCGGCACAGGAATATGTAC
GGCGTGCTATTTGAGAGATATTGCAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig941:131983..132658-

>mRNA_A-nodosum_M_contig941.6.1 ID=mRNA_A-nodosum_M_contig941.6.1|Name=mRNA_A-nodosum_M_contig941.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=249bp|location=Sequence derived from alignment at A-nodosum_M_contig941:131983..132658- (Ascophyllum nodosum dioecious)
ATGGGAGCTTGCGTGTGGAATGGCGATGCTGGCGTATGCTCGGAGTGGTT
CGAGGTAGCAAAGGGACTCCCTCAAGGGTGCGTACTTTCACCGCTGATGT
TCAACGTTTTCTTCGTTGTGATACTCTTCATCGTACTAGAGAGATTCAGC
GAGTACACGAACGTTATCTCCTACCTTGCCCATCTTCAAGTTCAATCGGC
GAAGTTTGACCTTGAAGCGGCACAGGAATATGTACGGCGTGCTATTTGA
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