prot_A-nodosum_M_contig94.97.12 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig94.97.12
Unique Nameprot_A-nodosum_M_contig94.97.12
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length1312
Homology
BLAST of mRNA_A-nodosum_M_contig94.97.12 vs. uniprot
Match: D7FMK4_ECTSI (Mediator of RNA polymerase II transcription subunit 14 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMK4_ECTSI)

HSP 1 Score: 796 bits (2055), Expect = 6.190e-265
Identity = 572/1305 (43.83%), Postives = 712/1305 (54.56%), Query Frame = 0
Query:   43 CQDQMFFMHGALFRARQRMYDVPVAADVLVGGRYPRLPKSIQYCGGDVDPRPTFELPANRKEILPRVDRAIRLALLRRGGVPSQFTKHVVSNGILTLLVEGEFQVRVTLLEERKDALWTLVGVDMKVHAREGEIITAPTANARQKRYLYEVVQKAMDKAMGSKDATDGRSHDHELVPNPLLAAYQVCHDLCSSMVLEILHGQAQKLSARIGGFWATHLVVVFHKEAQASFQFCLCLKYVLDLCFWHREFSTGLAGTGREVGIGGVRAFNGEGSLLHDPSEVELAANLPPPPAGCRYIRVHRPVDRQRQEMVASLGPAAELQKNEKLGSGKGNDNGNGQELGVAEGVEGGIGREKADLDDVSVNGGTVHVRADKLSCARVLLAATRTFASQKMDGLARDVKSLARQLGISKKFVGVTILGGLTARISSSNQNGALDVWLEVSVDARSGRYLVKDSGFATRKLGTVDFISRLEEALNLLPGSDSQSLGEKVTMALSAGG---REPNVKNGSIHGGQQQDLRQQQVRRCMAECFGVLRRAEIEDILRRGLGLVPHQRWQALLGRRNAERRNV---MPAIGWNAESVFRNATYSLIQQFREY-----EGCRXXXXXXGFRILGYLERKGGPGREGNEVGLMSMSTLTLPEAKRVATTASPTGEVTEPSRGAVG------PPLSTSSVVPDLHHVGPGVLPT-VAATMVEDSNRGEGSNSQPPRVVP-------TCSLRACQLGR---ETSEVLSFFLEIGITENLELEHTLLVAGLPTAATGPGRYSLRRAVKETYTL-DVKVNPGTGRGSY----LPTGTPTTDSQQFALLGKRSASYMESGQVERSAGLITDEAIPTLSPGKGVSQSVASATQLQELQEPDSINRWLLDDVTNVTNTSKVELVSHEGTEAELHKVVRMAKRFIPFARLQHVVLRLSVGTALSLDIQGLARSLESPVGPLSCAVDLFLGGKEGWSSPEVAAESASVKFSGGHVEAEYWEWDVTLGPGTMLMDYSGPDHGVGEAARLHRARIALELVKKKLPVIEHTFVGALKAPGDAVGMEHCGKSLGKHIKFRFPPLFSIRAMCRSFALSGEGLAAMRTLAAQAIELQRSKGCDSGGGGGYSVLSCSPIHVAMHDPLSDHVVVLTHSAFLVEHISSQERAGLVLMPLPDDVPTCPAAIQELQAAVSKHGDLRGLLHGLSRTIPVLMAVSRVVPGVASVAGAPGSFGFRRSCSSAEGKFVLEPVSPACFVLSARPKTEMR----PPLTLMIEASGLVRVTGLVDRKEDVVVNTAVLQDLLLEWIATGS 1310
            CQDQ FFMHG LF ARQR+YDVPVA DVL+GGRYP LPK I+YCGGD+DPRP FELPANR+EI+ RVDRAIRLALLRRGGVP+QFT H V NG+LTL V GEF++ VTL  ER+DA W L+GV + V AREGE ITAP  + RQ+RYL+EV+QKAMD         DG ++     PN LLAAYQVCHDLC SMVLEILH QAQKL+ R+GG WA  L V+FHK++Q                                                                                  +VA+LGP  E  +   LGS  G+ +    E             E + +D +  +  +V +  DKLSCAR+LLAA R FASQK++ LA DV+S A QLG     V  T +GGL+A I      G     +EVSVD +SGRYLVKD+     K      ISRL EALNLLP +DSQSLGE +   LSAG    ++ ++       G+Q DLRQQ VRRCM E FG+LRR E+E   R   G+VPH RWQALLGR +A   +     P +  +     R++    + QFRE      E  R       FRIL    R+G              S + L  A+R AT     G+V   +    G      PPL            G G LP  +AA++ E S+ G+   S+  R             ++A   G    ET EVLSFFLE+ IT NL++EHT++ A LPTA  G  R SLR  V ETY L   +   G+  GS     LP+  P       A+  KRSAS +++G  + + G+ T           GV   +   T                         + V  V  E ++ +L   V+M  RF+PFARLQH +LR  VGT LSLD + L     +      CAV  FL G+ GWSSPEVAA SA V F  GH +A+ WEWDVTLGP T LMD+        E   L   R    +V ++LP+ +H  +  ++  G          + GKH++FRFPP FS+ AMCRSFAL+GEGL  M+TLAAQA +L R  GC++ G   YSV+SCSPIHVAM D   DHVV+LTHSAF   HISS +R GLVL+P P   PTCPAA++EL+A+V KH DL  LLHGLSRT+PVL  VSRV+PGV S AG  G        S + G+FVL  V+PA FVLS  P  E R    P LTL +EA G VRV+     ++DVV +T  L+ LLLEWIA+ S
Sbjct:  106 CQDQFFFMHGGLFGARQRLYDVPVAVDVLIGGRYPHLPKGIEYCGGDIDPRPIFELPANREEIVLRVDRAIRLALLRRGGVPNQFTSHTVKNGVLTLTVNGEFELMVTLQAEREDARWALLGVTLLVQAREGESITAPVRDFRQQRYLHEVIQKAMDVH------ADGDANPR---PNALLAAYQVCHDLCCSMVLEILHAQAQKLATRVGGLWAAQLAVMFHKDSQ----------------------------------------------------------------------------------IVAALGPPGEFLEGRGLGSDVGDHSVTTDE-------------ETSAVDSLLTS--SVQIYPDKLSCARMLLAAARIFASQKVNTLAADVESYAAQLGACVPRV--TTVGGLSAYICPWGGGG-----VEVSVDVKSGRYLVKDTLPGGGK-AMASCISRLREALNLLPLTDSQSLGESIASTLSAGRSVLQKRSIPTQRARNGEQ-DLRQQHVRRCMGESFGLLRRGELEHTFRCAFGVVPHLRWQALLGRTDANAIDAGTEFPRL--DGSDTLRSSVR--LGQFRENGVLLSEAWRKRTRN--FRIL----RRG-------------TSAIELTRAERAATI----GQVPTAASAGAGFRLNSAPPLDGDLSCSSGWQQGGGTLPAALAASLAEVSDGGDDMASRSTRWRTDRGVGSGANGVKASSEGNVLEETGEVLSFFLEVDITGNLDVEHTVVSATLPTA--GRARKSLRPVVGETYKLFPCQPLSGSRCGSLDADLLPSKPPP------AVGTKRSASCLDAGYSQGAIGITT-----------GVHDGLCPTTL-----------------------HAAVGTVG-EASQTQLCTAVQMCNRFVPFARLQHALLR--VGTGLSLDFRELTHFSGATQQVPHCAV--FLAGEHGWSSPEVAASSARVSFFPGHTQADTWEWDVTLGPTTSLMDFIWAVPAKDEDKGLAVTR---GIVHEQLPLAQHIEILGVRQEG-IESSSTTRMAQGKHVRFRFPPPFSVHAMCRSFALAGEGLTVMQTLAAQASKL-RQTGCEAAG---YSVVSCSPIHVAMRDSKLDHVVLLTHSAFSSRHISSADRPGLVLIPWPH-APTCPAAMRELEASVRKHRDLNALLHGLSRTVPVLAEVSRVLPGVGSAAGMNGDR------SPSRGEFVLTAVTPARFVLSKSPLGERRLQSKPALTLAVEAGGQVRVST--PGRKDVVADTGALRRLLLEWIASTS 1204          
BLAST of mRNA_A-nodosum_M_contig94.97.12 vs. uniprot
Match: A0A836CA29_9STRA (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA29_9STRA)

HSP 1 Score: 164 bits (416), Expect = 2.370e-37
Identity = 186/620 (30.00%), Postives = 242/620 (39.03%), Query Frame = 0
Query:   52 GALFRARQRMYDVPVAADVLVGGRYPRLPKSIQYCGGDVDPR---PTFELPANRKEILPRVDRAIRLALLRRGGVPSQFTKHVVSNGILTLLVEGEFQVRVTLLEERKDALWTLVGVDMKVHAREGEIITAPTANARQKRYLYEVVQKAMDKAMGSKDATDGRSHD-----------------------------------------------------HELVPN-PLLAAYQVCHDLCSSMVLEILHGQAQKLSARIGGFWATHLVVVFHKEAQASFQFCLCLKYVLDLCFWHREFSTGLAGTGREVGIGGVRAFNGEGSLLHDPSEVELAANLPPPPAGCRYIRVH--RPVDRQRQEMVA-SLGPAAELQKNEKLGSGKGNDNGNGQELGVAEGVEGGIGREKADLDDVSVNGGTVHVRADKLSCARVLLAATRTFASQKMDGLARDVKSLAR--QLGISKKFVGVTI---LGGLTARISSSNQNGALDVWLEVSVDARSGRYLVKDSGFATRKLGTVDFISRLEEALNLLPGSDSQSLGEKVTMALSAGGREPNVKNGSIHGGQQQDLRQQQVRRCMAECFGVLRRAEI---EDILRRGLGLVPHQRWQALLGRRNA 603
            G LF ARQR +DVP A DVL  G YPRLP  I +CG D D     PT + P  R  +L RVDRA+RLALL R   P+ FT   V  G L L V  EF++R+TL  E  DA W L G+D++V +R GE I  P  + RQ+ YL  ++Q+A+D A  S  A+ G + +                                                      E+VP  PLL AY++ HD C    LE+L  QAQ L AR G  W   L  V  + A+           VLD+  W +E+   L                        P       N  PPPA  R+IRVH  RP     +  +   LGP A     E                                          +H+ A  LS +R++  A RTF  +K+  LA DV +  R    G      GV      GG   R+++    GALD+    + D R+GR +V       R   +    + LE AL L PG+  ++  +   M                       LR        A     LR A +   E     GLGL P  RW ALLGR  A
Sbjct:  116 GGLFGARQRPFDVPAALDVLGSGTYPRLPLGIPWCGMDQDESSLVPT-DTPEQRASVLARVDRALRLALLVREPFPAGFTSRAVRRGCLYLEVAHEFELRLTLEGEGGDAPWVLRGLDIRVASRAGEAIAPPPVDLRQRVYLQNLLQRALDAAADS--ASPGGTAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMADASEVVPGRPLLTAYRLAHDFCMGAQLELLSVQAQAL-ARPGAPWHGCLRAVLDRAAR-----------VLDIIVWEQEYGPALP-------------------TAAPPPPRGAPVNGVPPPAQGRFIRVHVQRPETADAEAHIRIQLGPGAAEAATE----------------------------------------AALHIDAAALSASRLVRDAVRTFTRRKLAVLAPDVAAALRGAPAGGXXXXSGVRARLHAGGRALRVAARG-GGALDI----AADLRTGRCVVLSERAEARPDASGAHAALLE-ALALPPGAAGRAHAQGRAM-----------------------LR--------ARLMAALRMAALDAAEAAAACGLGLEPQWRWGALLGRGGA 624          
BLAST of mRNA_A-nodosum_M_contig94.97.12 vs. uniprot
Match: F0W2P3_9STRA (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W2P3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.680e-14
Identity = 73/257 (28.40%), Postives = 115/257 (44.75%), Query Frame = 0
Query:   45 DQMFFMHGALFRARQRMYDVPVAADVLVGGRYPRLPKSIQYCGGDVDPRPTFELPANRKEILPRVDRAIRLALLRRGGVPSQFTKHVVSNGILTLLVEGEFQVRVTLLEERKDALWTLVGV-----------DMKVHAREGEIITAPTANARQKRYLYEVVQKAMDKAMGSKDATDGRSHDHELVPNPLLAAYQVCHDLCSSMVLEILHGQAQKLSARIGGFWATHLVVVFHKEAQASFQFCLCLKYVLDLCFW-HR 289
            D++FFMH  L RA++RMYD+  A DVL  G Y RLP  I+     + PR  F  P N  +    ++  IR  L++   +P QFT   + +G +     G+F++  TL   + DA+W +V V             + H+    I      N  Q  ++  ++Q A++ A                   P L A+++  + C+S+ L IL  QAQ L   + G W   L  V+H++             +LD  +W HR
Sbjct:   98 DRLFFMHANLDRAKERMYDLSTAIDVLYKGSYLRLPSVIERA---MYPR-EFP-PHNLTKTADTLNNLIRYRLIQ-SNIPKQFTSISLDHGFVYFTCSGQFEIVFTLQGLQPDAVWHVVRVHTILTDVNALQQYQTHSSAFRIFQNSAPNPTQYAHIRNLLQTALNHA-----------------EEPFLEAFKLMKEFCASLALHILRSQAQLL---LDGPWKHRLSTVYHRQGN-----------MLDFMYWPHR 317          
BLAST of mRNA_A-nodosum_M_contig94.97.12 vs. uniprot
Match: A0A830D088_9LAMI (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830D088_9LAMI)

HSP 1 Score: 88.6 bits (218), Expect = 8.070e-14
Identity = 61/208 (29.33%), Postives = 106/208 (50.96%), Query Frame = 0
Query:   41 SQCQDQMFFMHGALFRARQRMYDVPVAADVLVGGRYPRLPKSIQYCGGDVDPRPTFELPANRKEILPRVDRAIRLALLRRGGVPSQFTKHVVSNGILTLLVEGEFQVRVTLLEERKDALWTLVGVDMKVHAREGEIITAPTANARQKRYLYEVVQKAMDKAMGSKDATDGRSHDHELVPNPLLAAYQVCHDLCSSMVLEILHGQAQKL 248
            +Q  D MFFMH  L +AR  +YDVP A ++L+GG Y RLPK I+  G         + PA +K     ++  +R  LL    +P + T+  V +G+++L V+GEF+V VTL      ++W ++ +++ V  R G     P      +R+   V+   +++ M + +             NP +  Y + H+LC +++++ +  Q Q L
Sbjct:   93 TQAADSMFFMHEGLQQARAPIYDVPSAIEILLGGTYQRLPKCIEDVGTQSTLNEDQQGPALKK-----LETLVRSKLLEIS-LPKEITEIKVYDGVVSLRVDGEFKVLVTLGYRGHLSMWRILHLELLVGERSG-----PVKLEESRRH---VLGDDLERRMAASE-------------NPFMILYSILHELCVALIMDTVIRQVQAL 273          
BLAST of mRNA_A-nodosum_M_contig94.97.12 vs. uniprot
Match: A0A6D2JJD9_9BRAS (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JJD9_9BRAS)

HSP 1 Score: 87.8 bits (216), Expect = 1.370e-13
Identity = 64/208 (30.77%), Postives = 105/208 (50.48%), Query Frame = 0
Query:   41 SQCQDQMFFMHGALFRARQRMYDVPVAADVLVGGRYPRLPKSIQYCGGDVDPRPTFELPANRKEILPRVDRAIRLALLRRGGVPSQFTKHVVSNGILTLLVEGEFQVRVTLLEERKDALWTLVGVDMKVHAREGEIITAPTANARQKRYLYEVVQKAMDKAMGSKDATDGRSHDHELVPNPLLAAYQVCHDLCSSMVLEILHGQAQKL 248
            +Q  D +FFMH  L +AR  +YDVP A ++L+ G Y RLPK    C  DV  +P+ +    +K  L +++  +R  LL    +P + T+  VS G +TL VEGEF+V +TL      ++W ++ +D+ V  + G I    T    ++  L + +++ M  A                  NP    Y V H+LC ++V++ +  Q + L
Sbjct:   92 TQAADSLFFMHEGLQQARAPVYDVPSAVEILLTGSYQRLPK----CLDDVGMQPSLD-EHQQKPALRKLEVLVRSKLLETA-LPKEITEVKVSKGTVTLSVEGEFKVLITLGYRGHLSMWRILHLDLLVGEKSGPIKLEVT----RRHILGDDLERRMSVA-----------------ENPFTILYAVLHELCVAIVMDTVIRQVRAL 272          
BLAST of mRNA_A-nodosum_M_contig94.97.12 vs. uniprot
Match: A0A6J0P3M8_RAPSA (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0P3M8_RAPSA)

HSP 1 Score: 87.4 bits (215), Expect = 1.790e-13
Identity = 68/209 (32.54%), Postives = 102/209 (48.80%), Query Frame = 0
Query:   41 SQCQDQMFFMHGALFRARQRMYDVPVAADVLVGGRYPRLPKSIQYCGGDVDPRPTFELPANRK-EILPRVDRAIRLALLRRGGVPSQFTKHVVSNGILTLLVEGEFQVRVTLLEERKDALWTLVGVDMKVHAREGEIITAPTANARQKRYLYEVVQKAMDKAMGSKDATDGRSHDHELVPNPLLAAYQVCHDLCSSMVLEILHGQAQKL 248
            +Q  D +FFMH  L +AR  +YDVP A +VL+ G Y RLPK I   G         + PA RK E+L R  + + + L      P + T+  VS G +TL VEGEF+V VTL      ++W ++ +D+ V  R G I    T    ++  L + +++ M  A                  NP    Y V H+LC ++V++ +  Q + L
Sbjct:   92 TQAADSLFFMHEGLQQARAPVYDVPSAIEVLLTGSYQRLPKCIDDVGMQCSLDEVQQKPALRKLEVLVR-SKLLEITL------PKEITEVKVSKGTVTLSVEGEFKVLVTLGYRGHLSMWRILHLDLLVGERSGPIKLEVT----RRHILGDDLERRMSVA-----------------DNPFTILYAVLHELCVAIVMDTVIRQVRTL 272          
BLAST of mRNA_A-nodosum_M_contig94.97.12 vs. uniprot
Match: A0A565B5T9_9BRAS (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565B5T9_9BRAS)

HSP 1 Score: 87.4 bits (215), Expect = 1.800e-13
Identity = 66/208 (31.73%), Postives = 105/208 (50.48%), Query Frame = 0
Query:   41 SQCQDQMFFMHGALFRARQRMYDVPVAADVLVGGRYPRLPKSIQYCGGDVDPRPTFELPANRKEILPRVDRAIRLALLRRGGVPSQFTKHVVSNGILTLLVEGEFQVRVTLLEERKDALWTLVGVDMKVHAREGEIITAPTANARQKRYLYEVVQKAMDKAMGSKDATDGRSHDHELVPNPLLAAYQVCHDLCSSMVLEILHGQAQKL 248
            +Q  D +FFMH  L +AR  +YDVP A +VL+ G Y RLPK    C  DV  +P+ +    +K  L +++  +R  LL    +P + T+  VS G +TL V+GEF+V VTL      ++W ++ +D+ V  R G I    T    ++  L + +++ M  A                  NP    Y V H+LC ++V++ +  Q + L
Sbjct:   92 TQAADSLFFMHEGLQQARAPVYDVPSAVEVLLTGSYQRLPK----CLDDVGMQPSLD-EDQQKPALRKLEVLVRSKLLETT-LPKELTEVKVSRGTVTLSVDGEFKVLVTLGYRGHLSMWRILHLDLLVGERTGPIKLEVT----RRHILGDDLERRMSVA-----------------ENPFTILYAVLHELCVAIVMDTVIRQVRAL 272          
BLAST of mRNA_A-nodosum_M_contig94.97.12 vs. uniprot
Match: A0A2U1QFK7_ARTAN (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QFK7_ARTAN)

HSP 1 Score: 87.0 bits (214), Expect = 2.350e-13
Identity = 63/213 (29.58%), Postives = 108/213 (50.70%), Query Frame = 0
Query:   41 SQCQDQMFFMHGALFRARQRMYDVPVAADVLVGGRYPRLPKSIQYCGGDVDPRPTFELPANRKEILPRVDRAIRLALLRRGGVPSQFTKHVVSNGILTLLVEGEFQVRVTLLEERKDALWTLVGVDMKVHAREGEIITAPTANARQKRYLYEVVQKAMDKAMGSKDATDGRSHDHELVPNPLLAAYQVCHDLCSSMVLEILHGQAQKLSARIG 253
            +Q  D MFFMH  L +AR  +YDVP A ++L+ G Y RLPK    C  DV  + T      +K +L ++D  +R  LL    +P +F++  +S+G +TL+V+GEF+V +TL       +W ++ +++ V    G +    T     +R+   V+   +++ M + D              P    Y + H+ C +++++ +  Q Q L  RIG
Sbjct:   92 TQAADSMFFMHEGLQQARAPIYDVPSAIEILLTGTYERLPK----CTEDVGIQSTLT-EKQQKPVLKKLDTLVRSKLLETA-LPKEFSEVKISDGTVTLIVQGEFKVLLTLGYRGHLTMWRILHLEVLVGETSGPVKLEET-----RRF---VLGDDLERRMAASDT-------------PFTTLYTILHEFCVALIMDTVIRQVQAL--RIG 275          
BLAST of mRNA_A-nodosum_M_contig94.97.12 vs. uniprot
Match: A0A087H6Y6_ARAAL (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087H6Y6_ARAAL)

HSP 1 Score: 86.7 bits (213), Expect = 3.070e-13
Identity = 65/208 (31.25%), Postives = 105/208 (50.48%), Query Frame = 0
Query:   41 SQCQDQMFFMHGALFRARQRMYDVPVAADVLVGGRYPRLPKSIQYCGGDVDPRPTFELPANRKEILPRVDRAIRLALLRRGGVPSQFTKHVVSNGILTLLVEGEFQVRVTLLEERKDALWTLVGVDMKVHAREGEIITAPTANARQKRYLYEVVQKAMDKAMGSKDATDGRSHDHELVPNPLLAAYQVCHDLCSSMVLEILHGQAQKL 248
            +Q  D +FFMH  L +AR  +YDVP A +VL+ G Y RLPK    C  DV  +P+ +    +K  L +++  +R  LL    +P + T+  VS G +TL V+GEF+V VTL      ++W ++ +D+ V  + G I    T    ++  L + +++ M  A                  NP    Y V H+LC ++V++ +  Q + L
Sbjct:   93 TQAADSLFFMHEGLQQARAPVYDVPSAVEVLLTGSYQRLPK----CLDDVGMQPSLD-EDQQKPALRKLEVLVRSKLLETT-LPKELTEVKVSRGTVTLSVDGEFKVLVTLGYRGHLSMWRILHLDLLVGEKSGPIKLEVT----RRHILGDDLERRMSVA-----------------ENPFTILYTVLHELCVAIVMDTVIRQVRAL 273          
BLAST of mRNA_A-nodosum_M_contig94.97.12 vs. uniprot
Match: UPI0006AADBA3 (mediator of RNA polymerase II transcription subunit 14-like n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AADBA3)

HSP 1 Score: 85.1 bits (209), Expect = 8.270e-13
Identity = 66/209 (31.58%), Postives = 101/209 (48.33%), Query Frame = 0
Query:   41 SQCQDQMFFMHGALFRARQRMYDVPVAADVLVGGRYPRLPKSIQYCGGDVDPRPTFELPANRK-EILPRVDRAIRLALLRRGGVPSQFTKHVVSNGILTLLVEGEFQVRVTLLEERKDALWTLVGVDMKVHAREGEIITAPTANARQKRYLYEVVQKAMDKAMGSKDATDGRSHDHELVPNPLLAAYQVCHDLCSSMVLEILHGQAQKL 248
            +Q  D +FFMH  L +AR  +YDVP A +VL+ G Y RLPK +   G         + PA RK E+L R  + + + L      P + T+  VS G +TL VEGEF+V VTL      ++W ++ +D+ V  R G  I        ++  L + +++ M  A                  NP    Y V H+LC ++V++ +  Q + L
Sbjct:   92 TQAADSLFFMHEGLQQARAPVYDVPSAIEVLLTGSYQRLPKCVDDVGMQCSLDEQQQKPALRKLEVLVR-SKLLEITL------PKEITEVKVSKGTVTLSVEGEFKVLVTLGYRGHLSMWRILHLDLLVGERSGGPIKLEVT---RRHILGDDLERRMSVA-----------------ENPFTILYAVLHELCVAIVMDTVIRQVRTL 273          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig94.97.12 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMK4_ECTSI6.190e-26543.83Mediator of RNA polymerase II transcription subuni... [more]
A0A836CA29_9STRA2.370e-3730.00Mediator of RNA polymerase II transcription subuni... [more]
F0W2P3_9STRA1.680e-1428.40Mediator of RNA polymerase II transcription subuni... [more]
A0A830D088_9LAMI8.070e-1429.33Mediator of RNA polymerase II transcription subuni... [more]
A0A6D2JJD9_9BRAS1.370e-1330.77Mediator of RNA polymerase II transcription subuni... [more]
A0A6J0P3M8_RAPSA1.790e-1332.54Mediator of RNA polymerase II transcription subuni... [more]
A0A565B5T9_9BRAS1.800e-1331.73Mediator of RNA polymerase II transcription subuni... [more]
A0A2U1QFK7_ARTAN2.350e-1329.58Mediator of RNA polymerase II transcription subuni... [more]
A0A087H6Y6_ARAAL3.070e-1331.25Mediator of RNA polymerase II transcription subuni... [more]
UPI0006AADBA38.270e-1331.58mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013947Mediator complex, subunit Med14PFAMPF08638Med14coord: 42..151
e-value: 3.8E-19
score: 68.8
IPR013947Mediator complex, subunit Med14PANTHERPTHR12809MEDIATOR COMPLEX SUBUNITcoord: 42..293
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availablePANTHERPTHR12809:SF2MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 14coord: 42..293

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig94contigA-nodosum_M_contig94:900801..914370 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig94.97.12mRNA_A-nodosum_M_contig94.97.12Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig94 900480..914575 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig94.97.12 ID=prot_A-nodosum_M_contig94.97.12|Name=mRNA_A-nodosum_M_contig94.97.12|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1312bp
MDAAAELGRNPVSKRQIQPEYGDEQADAGRDCRMRLARPNSQCQDQMFFM
HGALFRARQRMYDVPVAADVLVGGRYPRLPKSIQYCGGDVDPRPTFELPA
NRKEILPRVDRAIRLALLRRGGVPSQFTKHVVSNGILTLLVEGEFQVRVT
LLEERKDALWTLVGVDMKVHAREGEIITAPTANARQKRYLYEVVQKAMDK
AMGSKDATDGRSHDHELVPNPLLAAYQVCHDLCSSMVLEILHGQAQKLSA
RIGGFWATHLVVVFHKEAQASFQFCLCLKYVLDLCFWHREFSTGLAGTGR
EVGIGGVRAFNGEGSLLHDPSEVELAANLPPPPAGCRYIRVHRPVDRQRQ
EMVASLGPAAELQKNEKLGSGKGNDNGNGQELGVAEGVEGGIGREKADLD
DVSVNGGTVHVRADKLSCARVLLAATRTFASQKMDGLARDVKSLARQLGI
SKKFVGVTILGGLTARISSSNQNGALDVWLEVSVDARSGRYLVKDSGFAT
RKLGTVDFISRLEEALNLLPGSDSQSLGEKVTMALSAGGREPNVKNGSIH
GGQQQDLRQQQVRRCMAECFGVLRRAEIEDILRRGLGLVPHQRWQALLGR
RNAERRNVMPAIGWNAESVFRNATYSLIQQFREYEGCRGCRECRGFRILG
YLERKGGPGREGNEVGLMSMSTLTLPEAKRVATTASPTGEVTEPSRGAVG
PPLSTSSVVPDLHHVGPGVLPTVAATMVEDSNRGEGSNSQPPRVVPTCSL
RACQLGRETSEVLSFFLEIGITENLELEHTLLVAGLPTAATGPGRYSLRR
AVKETYTLDVKVNPGTGRGSYLPTGTPTTDSQQFALLGKRSASYMESGQV
ERSAGLITDEAIPTLSPGKGVSQSVASATQLQELQEPDSINRWLLDDVTN
VTNTSKVELVSHEGTEAELHKVVRMAKRFIPFARLQHVVLRLSVGTALSL
DIQGLARSLESPVGPLSCAVDLFLGGKEGWSSPEVAAESASVKFSGGHVE
AEYWEWDVTLGPGTMLMDYSGPDHGVGEAARLHRARIALELVKKKLPVIE
HTFVGALKAPGDAVGMEHCGKSLGKHIKFRFPPLFSIRAMCRSFALSGEG
LAAMRTLAAQAIELQRSKGCDSGGGGGYSVLSCSPIHVAMHDPLSDHVVV
LTHSAFLVEHISSQERAGLVLMPLPDDVPTCPAAIQELQAAVSKHGDLRG
LLHGLSRTIPVLMAVSRVVPGVASVAGAPGSFGFRRSCSSAEGKFVLEPV
SPACFVLSARPKTEMRPPLTLMIEASGLVRVTGLVDRKEDVVVNTAVLQD
LLLEWIATGST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013947Mediator_Med14