prot_A-nodosum_M_contig934.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig934.1.1
Unique Nameprot_A-nodosum_M_contig934.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length77
Homology
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A401GM49_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GM49_9APHY)

HSP 1 Score: 67.0 bits (162), Expect = 3.410e-11
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 0
Query:    3 AAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGF 72
            A  D E+   +   AFLN D+DEEIY+ IP  F++   ++ RLNK +YGL Q G  W  K+C +  A+GF
Sbjct:  979 AKLDLEIHQMDVKSAFLNGDLDEEIYMNIPPSFRKDNKLIWRLNKALYGLKQAGHKWYKKICAEFEALGF 1048          
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A5E8BZJ0_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BZJ0_9ASCO)

HSP 1 Score: 66.2 bits (160), Expect = 5.120e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0
Query:    1 MEAAKDGELRHFEADQAFLNADIDEEIYIKIPE--EFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGFE 73
            + AAK+ E+ H +   AFLN D++E+IY+K P   +    PG+V +LNK +YGL Q   CWN KL   + A+G++
Sbjct:   12 LSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYK 86          
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A5E8C5S9_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C5S9_9ASCO)

HSP 1 Score: 66.2 bits (160), Expect = 6.150e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0
Query:    1 MEAAKDGELRHFEADQAFLNADIDEEIYIKIPE--EFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGFE 73
            + AAK+ E+ H +   AFLN D++E+IY+K P   +    PG+V +LNK +YGL Q   CWN KL   + A+G++
Sbjct:   44 LSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYK 118          
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A5E8C4X9_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4X9_9ASCO)

HSP 1 Score: 66.2 bits (160), Expect = 6.160e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0
Query:    1 MEAAKDGELRHFEADQAFLNADIDEEIYIKIPE--EFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGFE 73
            + AAK+ E+ H +   AFLN D++E+IY+K P   +    PG+V +LNK +YGL Q   CWN KL   + A+G++
Sbjct:  160 LSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYK 234          
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A5E8C1Z7_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1Z7_9ASCO)

HSP 1 Score: 66.2 bits (160), Expect = 6.370e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0
Query:    1 MEAAKDGELRHFEADQAFLNADIDEEIYIKIPE--EFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGFE 73
            + AAK+ E+ H +   AFLN D++E+IY+K P   +    PG+V +LNK +YGL Q   CWN KL   + A+G++
Sbjct:  678 LSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYK 752          
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A5E8BZM0_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BZM0_9ASCO)

HSP 1 Score: 66.2 bits (160), Expect = 6.370e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0
Query:    1 MEAAKDGELRHFEADQAFLNADIDEEIYIKIPE--EFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGFE 73
            + AAK+ E+ H +   AFLN D++E+IY+K P   +    PG+V +LNK +YGL Q   CWN KL   + A+G++
Sbjct:  991 LSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYK 1065          
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A5E8C1N6_9ASCO (Integrase catalytic domain-containing protein n=3 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1N6_9ASCO)

HSP 1 Score: 66.2 bits (160), Expect = 6.430e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0
Query:    1 MEAAKDGELRHFEADQAFLNADIDEEIYIKIPE--EFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGFE 73
            + AAK+ E+ H +   AFLN D++E+IY+K P   +    PG+V +LNK +YGL Q   CWN KL   + A+G++
Sbjct: 1971 LSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYK 2045          
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A5E8C1X8_9ASCO (Integrase catalytic domain-containing protein n=2 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1X8_9ASCO)

HSP 1 Score: 66.2 bits (160), Expect = 6.430e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0
Query:    1 MEAAKDGELRHFEADQAFLNADIDEEIYIKIPE--EFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGFE 73
            + AAK+ E+ H +   AFLN D++E+IY+K P   +    PG+V +LNK +YGL Q   CWN KL   + A+G++
Sbjct: 2000 LSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYK 2074          
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A5E8C8U5_9ASCO (Uncharacterized protein n=2 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C8U5_9ASCO)

HSP 1 Score: 66.2 bits (160), Expect = 6.440e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0
Query:    1 MEAAKDGELRHFEADQAFLNADIDEEIYIKIPE--EFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGFE 73
            + AAK+ E+ H +   AFLN D++E+IY+K P   +    PG+V +LNK +YGL Q   CWN KL   + A+G++
Sbjct: 2463 LSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYK 2537          
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A5E8C5T7_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C5T7_9ASCO)

HSP 1 Score: 66.2 bits (160), Expect = 6.450e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0
Query:    1 MEAAKDGELRHFEADQAFLNADIDEEIYIKIPE--EFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGFE 73
            + AAK+ E+ H +   AFLN D++E+IY+K P   +    PG+V +LNK +YGL Q   CWN KL   + A+G++
Sbjct: 2628 LSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYK 2702          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GM49_9APHY3.410e-1144.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A5E8BZJ0_9ASCO5.120e-1142.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C5S9_9ASCO6.150e-1142.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C4X9_9ASCO6.160e-1142.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C1Z7_9ASCO6.370e-1142.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8BZM0_9ASCO6.370e-1142.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C1N6_9ASCO6.430e-1142.67Integrase catalytic domain-containing protein n=3 ... [more]
A0A5E8C1X8_9ASCO6.430e-1142.67Integrase catalytic domain-containing protein n=2 ... [more]
A0A5E8C8U5_9ASCO6.440e-1142.67Uncharacterized protein n=2 Tax=Saprochaete ingens... [more]
A0A5E8C5T7_9ASCO6.450e-1142.67Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 5..75
e-value: 5.1E-14
score: 52.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig934contigA-nodosum_M_contig934:11079..11309 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig934.1.1mRNA_A-nodosum_M_contig934.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig934 10716..11309 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig934.1.1 ID=prot_A-nodosum_M_contig934.1.1|Name=mRNA_A-nodosum_M_contig934.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=77bp
MEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIY
GLVQVGRCWNNKLCYDMAAIGFEQKRI
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2