prot_A-nodosum_M_contig925.2.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig925.2.1
Unique Nameprot_A-nodosum_M_contig925.2.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length360
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig925.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 225..248
e-value: 150.0
score: 3.7
coord: 249..272
e-value: 15.0
score: 11.9
coord: 273..296
e-value: 140.0
score: 3.9
coord: 177..201
e-value: 15.0
score: 11.7
coord: 297..320
e-value: 64.0
score: 6.7
coord: 321..345
e-value: 24.0
score: 10.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 9..199
e-value: 2.1E-29
score: 104.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 203..268
e-value: 1.3E-19
score: 72.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 269..360
e-value: 6.4E-30
score: 105.9
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 275..334
e-value: 9.9E-7
score: 28.4
NoneNo IPR availablePANTHERPTHR46084:SF19OS04G0534200 PROTEINcoord: 42..192
NoneNo IPR availablePANTHERPTHR46084:SF19OS04G0534200 PROTEINcoord: 234..331
coord: 270..360
coord: 135..243
NoneNo IPR availablePANTHERPTHR46084PROTEIN MALE DISCOVERER 2coord: 234..331
coord: 135..243
NoneNo IPR availablePANTHERPTHR46084:SF19OS04G0534200 PROTEINcoord: 182..292
NoneNo IPR availablePANTHERPTHR46084PROTEIN MALE DISCOVERER 2coord: 182..292
coord: 270..360
NoneNo IPR availablePANTHERPTHR46084PROTEIN MALE DISCOVERER 2coord: 42..192
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 115..359

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig925contigA-nodosum_M_contig925:50223..119808 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig925.2.1mRNA_A-nodosum_M_contig925.2.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig925 49895..119808 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig925.2.1 ID=prot_A-nodosum_M_contig925.2.1|Name=mRNA_A-nodosum_M_contig925.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=360bp
MKARVSTETEVDREALTALFQATNGHRWLNNRGWIEEIELWKWSGVQVNA
DDHVVKLHLGNRQASPRSLSEVEILLGISSPSSSCSNFLYCRDGDFEISE
SLRRELATLRKHLVLNNLTGSIPSDLGALAFLEELDLSYSRLNGWLPCEL
GTLTALQKLHLPVNKLAGPIPKELGQLTALQQLNLSYNNLAGPIPRELGR
LDALLKLHLVFNELTGPIPSDLGNLTALKELILSNNQLSGPIPIELGKMT
ALQTLFLNYNQLTGSMPNELGNLTALQRLFLCDNQLTGHIPVDLGKLTGL
QKLILSNNQLTGPIPSELGNLTTLQRLILSNNQLTGPIPSDLGKLITLQS
LFLCDNQLTG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt