prot_A-nodosum_M_contig9248.6.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9248.6.1
Unique Nameprot_A-nodosum_M_contig9248.6.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length324
Homology
BLAST of mRNA_A-nodosum_M_contig9248.6.1 vs. uniprot
Match: A0A1R3KEM0_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3KEM0_COCAP)

HSP 1 Score: 82.0 bits (201), Expect = 1.640e-13
Identity = 80/321 (24.92%), Postives = 141/321 (43.93%), Query Frame = 0
Query:   12 RLWAEALNHTCDMSNMYVTSSLKGGTSPYEKWYGRNPSLQHLQPFGTVSYAQKGKRAQ-KLAPRGEQCVMLDIAHNYPRDTVKVLVVQTEQMLNRKNVSWHPEINP-------GGPISI--APAGNNNTAEPVGVRGNTTEAHTPTQLAQEAEEESXXXEPPRSPGPQHSEQMETRXXXXXXXXXXXXXXXXXXXAAVRNLANYFTGVLASAIHERTRSSGGVDSRARSGEIDGGPSAFSGVYIGKDGQIEKYKCRFVTQRFRQVKGLHCYESFSPTLTSSSMRAVLTTATVKNWGLRPIDVEQAYLQANIVEEIYIELPE 322
            + W E +     + N+  T  L G T PYE  YG+ PS  HL+ FG + YA    +++ K   R  +CV L   + Y +   KV  ++++++   ++V +H  I P         PIS    P  +    +P  +  N+   H    L       S   EPP    P+ + Q  T                     ++R+    +   +A+ I    ++          G+ +        +    DG +E+YK R V + + QV+GL  +E F P     ++R++L  A++KNW L+ +DV  A+L  ++ EE+Y+++P+
Sbjct:  244 KFWGECILTATYLINLIPTPVLDGRT-PYEILYGKVPSYTHLRVFGCLCYAHNHSQSRHKFDTRAFRCVFL--GYPYGQKGYKVYDLESKKIFVSRDVVFHEHIYPFLQPTSEPNPISSPHTPLHSTIIDDPEVLATNSNIDHITETLNNTQPFTSQEIEPPE---PEVAPQPNTNSNSLSPSIRPRR--------SIRD--EKWREAMANEIAALEQNETWTLENFPVGKKEIDSKWVYQIKYKPDGTVERYKARLVAKGYTQVEGLDYHEIFPPVAKLVTVRSLLAIASIKNWTLQKLDVNNAFLHGDLHEEVYMKIPQ 548          
BLAST of mRNA_A-nodosum_M_contig9248.6.1 vs. uniprot
Match: UPI0007191E6F (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Glycine max TaxID=3847 RepID=UPI0007191E6F)

HSP 1 Score: 70.9 bits (172), Expect = 1.060e-11
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 0
Query:  247 KDGQIEKYKCRFVTQRFRQVKGLHCYESFSPTLTSSSMRAVLTTATVKNWGLRPIDVEQAYLQANIVEEIYIELP 321
            +DG +E+YK R V + + Q+KG+   ++FSP    +++R VL  A+ K W L  +DV  A+L AN+ EEIY+ LP
Sbjct:   38 QDGTVERYKARLVVKGYTQIKGIGFMDTFSPIAKMTTLRVVLALASSKKWFLHQLDVANAFLHANLEEEIYMALP 112          
BLAST of mRNA_A-nodosum_M_contig9248.6.1 vs. uniprot
Match: UPI000CED7874 (uncharacterized protein LOC112098012 n=1 Tax=Citrus clementina TaxID=85681 RepID=UPI000CED7874)

HSP 1 Score: 71.2 bits (173), Expect = 1.880e-11
Identity = 26/72 (36.11%), Postives = 49/72 (68.06%), Query Frame = 0
Query:  248 DGQIEKYKCRFVTQRFRQVKGLHCYESFSPTLTSSSMRAVLTTATVKNWGLRPIDVEQAYLQANIVEEIYIE 319
            DG + KYK R V + F+Q+ G++C+E+FSP +  +++R +L+ A +  W +R +DV  A+L   + EE++++
Sbjct:   78 DGSVAKYKARLVAKGFQQIMGVNCFETFSPVIKPATVRVILSLAVMNQWKIRQVDVNNAFLNGELTEEVFMD 149          
BLAST of mRNA_A-nodosum_M_contig9248.6.1 vs. uniprot
Match: A0A392Q6F2_9FABA (Retrovirus-related pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392Q6F2_9FABA)

HSP 1 Score: 71.2 bits (173), Expect = 6.470e-11
Identity = 29/75 (38.67%), Postives = 50/75 (66.67%), Query Frame = 0
Query:  248 DGQIEKYKCRFVTQRFRQVKGLHCYESFSPTLTSSSMRAVLTTATVKNWGLRPIDVEQAYLQANIVEEIYIELPE 322
            DG IE+YK R V + + Q++GL  +++FSP    S++R +L  A++KNW L  +DV  A+L   + E++Y+ +P+
Sbjct:  111 DGSIERYKARLVAKGYNQIEGLDFFDTFSPVAKLSTVRILLAIASIKNWHLHQLDVNNAFLHGELQEDVYMAIPD 185          
BLAST of mRNA_A-nodosum_M_contig9248.6.1 vs. uniprot
Match: A0A438EKH6_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EKH6_VITVI)

HSP 1 Score: 70.9 bits (172), Expect = 6.800e-11
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 0
Query:  248 DGQIEKYKCRFVTQRFRQVKGLHCYESFSPTLTSSSMRAVLTTATVKNWGLRPIDVEQAYLQANIVEEIYIELP 321
            DG I KYK R V + F QV G    E+FSP + S+++R VLT A  KNW +R +D+  A+L  ++ +E+++E P
Sbjct:   75 DGTINKYKARLVAKGFHQVAGFDFNETFSPVVKSTTIRVVLTIALAKNWVVRQLDINNAFLNGDLQKEVFMEQP 148          
BLAST of mRNA_A-nodosum_M_contig9248.6.1 vs. uniprot
Match: A0A0V0IXE8_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0IXE8_SOLCH)

HSP 1 Score: 73.6 bits (179), Expect = 9.660e-11
Identity = 31/75 (41.33%), Postives = 53/75 (70.67%), Query Frame = 0
Query:  248 DGQIEKYKCRFVTQRFRQVKGLHCYESFSPTLTSSSMRAVLTTATVKNWGLRPIDVEQAYLQANIVEEIYIELPE 322
            DG++E++K R V + + Q +GL  +E+FSP +  S++RAV++ A +K W L  +DV  A+LQ ++ EE+Y+ +PE
Sbjct:  499 DGEVERFKARLVAKGYSQKEGLDYHETFSPVVRMSTVRAVISVAAIKGWKLYQMDVYNAFLQGDLYEEVYMNIPE 573          
BLAST of mRNA_A-nodosum_M_contig9248.6.1 vs. uniprot
Match: A0A392R5K8_9FABA (Putative E3 ubiquitin-protein ligase LOG2 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392R5K8_9FABA)

HSP 1 Score: 68.9 bits (167), Expect = 9.730e-11
Identity = 28/75 (37.33%), Postives = 49/75 (65.33%), Query Frame = 0
Query:  248 DGQIEKYKCRFVTQRFRQVKGLHCYESFSPTLTSSSMRAVLTTATVKNWGLRPIDVEQAYLQANIVEEIYIELPE 322
            DG IE+YK R V + + QV+GL  +++FSP    +++R +L  A++K W L  +DV  A+L   + E++Y+ +P+
Sbjct:   39 DGTIERYKARLVAKGYTQVEGLDFFDTFSPVAKLTTVRTLLAIASIKQWHLHQLDVNNAFLHGELTEDVYMSIPD 113          
BLAST of mRNA_A-nodosum_M_contig9248.6.1 vs. uniprot
Match: UPI00073A3944 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Solanum tuberosum TaxID=4113 RepID=UPI00073A3944)

HSP 1 Score: 72.8 bits (177), Expect = 1.060e-10
Identity = 32/74 (43.24%), Postives = 51/74 (68.92%), Query Frame = 0
Query:  248 DGQIEKYKCRFVTQRFRQVKGLHCYESFSPTLTSSSMRAVLTTATVKNWGLRPIDVEQAYLQANIVEEIYIELP 321
            DG IE+YK R V + + Q++GL   ++FSP + S+++R VLT ATV+ W LR +DV+ A+L   + E +Y++ P
Sbjct:    4 DGTIERYKARLVAKGYNQIEGLDFEDTFSPVVKSTTIRMVLTIATVRKWPLRQLDVKNAFLHGRLKETVYMQQP 77          
BLAST of mRNA_A-nodosum_M_contig9248.6.1 vs. uniprot
Match: A0A6P4NN23_GOSAR (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4NN23_GOSAR)

HSP 1 Score: 70.5 bits (171), Expect = 1.190e-10
Identity = 30/74 (40.54%), Postives = 48/74 (64.86%), Query Frame = 0
Query:  248 DGQIEKYKCRFVTQRFRQVKGLHCYESFSPTLTSSSMRAVLTTATVKNWGLRPIDVEQAYLQANIVEEIYIELP 321
            DG +++YK R V + F Q  G+   ++FSP + ++++R +LT A +K W LR +DV  A+L   +VEEIY+  P
Sbjct:   81 DGSVDRYKARLVAKGFSQHAGIDFQDTFSPVVRATTIRTILTIAVMKRWSLRQVDVNNAFLNGELVEEIYMTQP 154          
BLAST of mRNA_A-nodosum_M_contig9248.6.1 vs. uniprot
Match: UPI000B903DB4 (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI000B903DB4)

HSP 1 Score: 68.2 bits (165), Expect = 3.130e-10
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 0
Query:  248 DGQIEKYKCRFVTQRFRQVKGLHCYESFSPTLTSSSMRAVLTTATVKNWGLRPIDVEQAYLQANIVEEIYIE 319
            +G I+ YK R V Q F Q+ GL    +FSP +TSS++R +L+ AT+  W LR +DV  A L  ++ E I++E
Sbjct:   90 NGSIDPYKARLVAQGFTQIPGLDFSHTFSPVVTSSTIRVILSLATINKWSLRQLDVNNASLNGHLAETIFME 161          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9248.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1R3KEM0_COCAP1.640e-1324.92Integrase, catalytic core n=1 Tax=Corchorus capsul... [more]
UPI0007191E6F1.060e-1142.67uncharacterized mitochondrial protein AtMg00820-li... [more]
UPI000CED78741.880e-1136.11uncharacterized protein LOC112098012 n=1 Tax=Citru... [more]
A0A392Q6F2_9FABA6.470e-1138.67Retrovirus-related pol polyprotein from transposon... [more]
A0A438EKH6_VITVI6.800e-1143.24Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0IXE8_SOLCH9.660e-1141.33Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A392R5K8_9FABA9.730e-1137.33Putative E3 ubiquitin-protein ligase LOG2 (Fragmen... [more]
UPI00073A39441.060e-1043.24uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A6P4NN23_GOSAR1.190e-1040.54uncharacterized mitochondrial protein AtMg00820-li... [more]
UPI000B903DB43.130e-1043.06uncharacterized mitochondrial protein AtMg00820-li... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 247..321
e-value: 3.1E-13
score: 49.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..193
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9248contigA-nodosum_M_contig9248:9801..10772 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9248.6.1mRNA_A-nodosum_M_contig9248.6.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9248 9720..10985 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9248.6.1 ID=prot_A-nodosum_M_contig9248.6.1|Name=mRNA_A-nodosum_M_contig9248.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=324bp
MLQEMSMAASDRLWAEALNHTCDMSNMYVTSSLKGGTSPYEKWYGRNPSL
QHLQPFGTVSYAQKGKRAQKLAPRGEQCVMLDIAHNYPRDTVKVLVVQTE
QMLNRKNVSWHPEINPGGPISIAPAGNNNTAEPVGVRGNTTEAHTPTQLA
QEAEEESESSEPPRSPGPQHSEQMETRIEESSDQTSEPMVEPAMIPAAVR
NLANYFTGVLASAIHERTRSSGGVDSRARSGEIDGGPSAFSGVYIGKDGQ
IEKYKCRFVTQRFRQVKGLHCYESFSPTLTSSSMRAVLTTATVKNWGLRP
IDVEQAYLQANIVEEIYIELPEE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2