prot_A-nodosum_M_contig92.2.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig92.2.1
Unique Nameprot_A-nodosum_M_contig92.2.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length86
Homology
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: A0A6H5KC32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC32_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.640e-25
Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 0
Query:    1 MPVCIFFERGMCFTPNCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKHVERDWKRPSRDDE--GNYGTGND 70
            MPVCI+FE+GMCFTPNCPY HVKVSQ+AAVCP FLKG+CPDG +CRLKH   D ++ ++DD   G++G G++
Sbjct:  840 MPVCIYFEKGMCFTPNCPYLHVKVSQNAAVCPRFLKGHCPDGTACRLKHELPDPRKRAKDDSAGGDHGDGDE 911          
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: D8LB82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB82_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 2.240e-25
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 0
Query:    1 MPVCIFFERGMCFTPNCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKHVERDWKRPSRD 60
            MPVCI+FE+GMCFTPNCPY HVKVSQ+AAVCP FLKGYCPDG +CRLKH   D ++ +RD
Sbjct:  825 MPVCIYFEKGMCFTPNCPYLHVKVSQNAAVCPRFLKGYCPDGTACRLKHELPDPRKRARD 884          
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: UPI0015ACC594 (zinc finger CCCH domain-containing protein 3 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015ACC594)

HSP 1 Score: 75.5 bits (184), Expect = 2.550e-15
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query:    1 MPVCIFFERGMCFTPNCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKHV 50
            MPVC +F RG+C + +CPY HV VS+SAAVC +FL+GYCP G  C+ KH 
Sbjct:    1 MPVCSYFLRGICSSSSCPYSHVYVSRSAAVCQDFLRGYCPRGEKCKQKHT 50          
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: UPI000CDFCBD4 (zinc finger CCCH domain-containing protein 3-like n=3 Tax=Salmoninae TaxID=504568 RepID=UPI000CDFCBD4)

HSP 1 Score: 72.4 bits (176), Expect = 6.210e-14
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:    1 MPVCIFFERGMCFTPNCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKHV 50
            MPVC +F +G+C   +CPY HV VS+ AAVC +F++GYCP G  C+ KH 
Sbjct:    3 MPVCSYFLKGICNNSSCPYSHVYVSRKAAVCQDFIRGYCPQGQKCKKKHT 52          
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: A0A8J4PM82_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PM82_9MYCE)

HSP 1 Score: 74.3 bits (181), Expect = 1.250e-13
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 0
Query:    1 MPVCIFFERGMCFTPNCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKHV---ERDWKRPSRD 60
            MP+C  + +GMC   NCPY HV VS++A +CP+F KGYCP+G +C +KH    E+D    ++D
Sbjct:  400 MPICYLYLKGMCTKVNCPYLHVFVSKNAKLCPDFQKGYCPNGSACTMKHTYGKEKDINEKNKD 462          
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: L8GPM4_ACACA (CCCH zinc finger protein, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPM4_ACACA)

HSP 1 Score: 67.8 bits (164), Expect = 1.970e-11
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 0
Query:    1 MPVCIFFERGMCFTPNCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKHV 50
            +PVC  F  G CF  +CPY HV V+  AAVC +FL GYCP G +C+L H 
Sbjct:  142 LPVCFRFLLGSCFDEHCPYPHVNVNPLAAVCEDFLAGYCPQGSACKLLHT 191          
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: A0A0S4KP33_BODSA (Cleavage and polyadenylation specificity factor 30, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4KP33_BODSA)

HSP 1 Score: 59.7 bits (143), Expect = 1.620e-8
Identity = 21/52 (40.38%), Postives = 33/52 (63.46%), Query Frame = 0
Query:    1 MPVCIFFER-GMCFTPNCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKHVE 51
            +P C F++R G C  P CP++HV   +   +C  +L+G+CP G  CRL+H +
Sbjct:   89 VPECAFYQRLGECTNPECPFKHVNPMEKTPLCAAYLRGFCPKGPECRLRHQQ 140          
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: UPI001455641C (serine/arginine repetitive matrix protein 2-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455641C)

HSP 1 Score: 58.5 bits (140), Expect = 4.680e-8
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 0
Query:   16 NCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKHVER 52
            +CPY HVKVS  A  CP+F+KGYCP G  C+ KH+ R
Sbjct:  811 DCPYSHVKVSNKATPCPDFIKGYCPLGEKCKKKHIVR 847          
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: A7SQV2_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SQV2_NEMVE)

HSP 1 Score: 54.3 bits (129), Expect = 3.530e-7
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 0
Query:   16 NCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKH 49
            +CPY HV VS  AA+C +F+KGYCP G  C+ KH
Sbjct:   96 DCPYSHVNVSNKAAICEDFVKGYCPLGQQCKKKH 129          
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: A0A7S1X995_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X995_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 3.840e-7
Identity = 20/38 (52.63%), Postives = 24/38 (63.16%), Query Frame = 0
Query:   12 CFTPNCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKH 49
            C  P CPY HV V  +A VC  FL+G+CP G  C +KH
Sbjct:   27 CGNPECPYLHVNVDPAAPVCQAFLRGHCPKGRDCPMKH 64          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KC32_9PHAE1.640e-2565.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB82_ECTSI2.240e-2575.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI0015ACC5942.550e-1560.00zinc finger CCCH domain-containing protein 3 n=1 T... [more]
UPI000CDFCBD46.210e-1454.00zinc finger CCCH domain-containing protein 3-like ... [more]
A0A8J4PM82_9MYCE1.250e-1347.62Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
L8GPM4_ACACA1.970e-1154.00CCCH zinc finger protein, putative n=1 Tax=Acantha... [more]
A0A0S4KP33_BODSA1.620e-840.38Cleavage and polyadenylation specificity factor 30... [more]
UPI001455641C4.680e-859.46serine/arginine repetitive matrix protein 2-like n... [more]
A7SQV2_NEMVE3.530e-758.82Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
A0A7S1X995_9CHLO3.840e-752.63Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 1..23
e-value: 1.4
score: 15.1
coord: 25..51
e-value: 3.6E-4
score: 29.8
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 29..50
e-value: 6.9E-5
score: 22.7
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 1..24
score: 10.107931
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 25..52
score: 13.384727
NoneNo IPR availableGENE3D4.10.1000.10coord: 23..77
e-value: 1.8E-5
score: 26.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..85
NoneNo IPR availablePANTHERPTHR46156CCCH ZINGC FINGERcoord: 1..50
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 17..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig92contigA-nodosum_M_contig92:2908..4347 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig92.2.1mRNA_A-nodosum_M_contig92.2.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig92 2813..4633 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig92.2.1 ID=prot_A-nodosum_M_contig92.2.1|Name=mRNA_A-nodosum_M_contig92.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp
MPVCIFFERGMCFTPNCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKHV
ERDWKRPSRDDEGNYGTGNDGKTEDTRGETGLVHV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR036855Znf_CCCH_sf