prot_A-nodosum_M_contig9173.2.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9173.2.1
Unique Nameprot_A-nodosum_M_contig9173.2.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length449
Homology
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BLAST of mRNA_A-nodosum_M_contig9173.2.1 vs. uniprot
Match: D7FUF2_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF2_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 1.400e-30
Identity = 73/143 (51.05%), Postives = 91/143 (63.64%), Query Frame = 0 
Query:  310 ICKTCKKK---GRLKSGRTCAGCKQWWHANADCSAAARGSHPDPSDDGNWVGGWRCQGCLDDWEDGLRARTAEVVKAWAEHEEKRERKATEFQAAKEAAMAESIEAKRHGFMVDTVEVPPIPHPPAGILPFLDVSSIRDTGHR 449
            +C  CKKK       SG+TC  C +WWH +  C     G++  P + G WVGGWRC+ CL  WE GLR R A+VV+AW + E +RER A   +    AA AES  A+RHGF V  VE+PP+  PPAGILPFLDV +I+DTG R
Sbjct:  365 VCFKCKKKRSGSNKSSGKTCGTCGRWWHNSVHCC----GAYGCP-ESGEWVGGWRCRHCLSLWEKGLRDRAAKVVEAWNDQEARRERDAPLHRETAAAAAAESKAARRHGFSVAAVEIPPVCCPPAGILPFLDVDAIKDTGFR 502
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9173.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUF2_ECTSI1.400e-3051.05PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9173contigA-nodosum_M_contig9173:10809..13790 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9173.2.1mRNA_A-nodosum_M_contig9173.2.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9173 10809..13790 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9173.2.1 ID=prot_A-nodosum_M_contig9173.2.1|Name=mRNA_A-nodosum_M_contig9173.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=449bp
ASLRGKGTLTTGSQTWCPVCFKDNRVPGQYKSKSLDGGQKCPGCGLKAHA
ACLRLRADRTWPCVECQCRKEGLSPKRLFEAHSTVLGAVASSGNKSSSCE
RDMTHVRTVLTSPKDSESMQPHGEGNPGALASKAPQVAELWATFHASTIR
SNADSSKRYTSEGRAHAGASFGDKPAAPPALHAHGSSIPSFPPAASGEKL
HQRKCARATAVTAQTPVRPPIGWKPFEVVKNRGEARSFSNRGRTVVGPAP
FSAAAKYRHYGVGTPPSSAHKPPLEDRLRRGTIGSVEAARTSRRSKVALG
GSSAGASVVICKTCKKKGRLKSGRTCAGCKQWWHANADCSAAARGSHPDP
SDDGNWVGGWRCQGCLDDWEDGLRARTAEVVKAWAEHEEKRERKATEFQA
AKEAAMAESIEAKRHGFMVDTVEVPPIPHPPAGILPFLDVSSIRDTGHR
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