mRNA_A-nodosum_M_contig9173.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9173.2.1
Unique NamemRNA_A-nodosum_M_contig9173.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9173.2.1 vs. uniprot
Match: D7FUF2_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF2_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 1.400e-30
Identity = 73/143 (51.05%), Postives = 91/143 (63.64%), Query Frame = 1 
Query:  928 ICKTCKKK---GRLKSGRTCAGCKQWWHANADCSAAARGSHPDPSDDGNWVGGWRCQGCLDDWEDGLRARTAEVVKAWAEHEEKRERKATEFQAAKEAAMAESIEAKRHGFMVDTVEVPPIPHPPAGILPFLDVSSIRDTGHR 1347
            +C  CKKK       SG+TC  C +WWH +  C     G++  P + G WVGGWRC+ CL  WE GLR R A+VV+AW + E +RER A   +    AA AES  A+RHGF V  VE+PP+  PPAGILPFLDV +I+DTG R
Sbjct:  365 VCFKCKKKRSGSNKSSGKTCGTCGRWWHNSVHCC----GAYGCP-ESGEWVGGWRCRHCLSLWEKGLRDRAAKVVEAWNDQEARRERDAPLHRETAAAAAAESKAARRHGFSVAAVEIPPVCCPPAGILPFLDVDAIKDTGFR 502
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9173.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUF2_ECTSI1.400e-3051.05PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9173contigA-nodosum_M_contig9173:10809..13790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LKX6
Preferred nameUSP48
PFAMsUCH,ubiquitin
Model size1347
Max annot lvl2759|Eukaryota
KEGG koko:K02911,ko:K06255,ko:K11858
KEGG Pathwayko03010,ko04512,ko05161,ko05205,map03010,map04512,map05161,map05205
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0007275,GO:0008150,GO:0009791,GO:0010154,GO:0016020,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044464,GO:0045121,GO:0045202,GO:0045211,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0070013,GO:0071944,GO:0097060,GO:0098589,GO:0098590,GO:0098794,GO:0098805,GO:0098857
Exons2
Evalue3.76e-10
EggNOG OGsCOG5077@1|root,KOG1863@2759|Eukaryota
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
Cds size1347
COG categoryO
BRITEbr01610,ko00000,ko00001,ko00002,ko00535,ko01000,ko01002,ko03011,ko03029,ko04121,ko04147,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870376.2119658-CDS-A-nodosum_M_contig9173:10808..108831680870376.2119658-CDS-A-nodosum_M_contig9173:10808..10883Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9173 10809..10883 -
1680870376.2259622-CDS-A-nodosum_M_contig9173:12518..137901680870376.2259622-CDS-A-nodosum_M_contig9173:12518..13790Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9173 12519..13790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9173.2.1prot_A-nodosum_M_contig9173.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9173 10809..13790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9173.2.1

>prot_A-nodosum_M_contig9173.2.1 ID=prot_A-nodosum_M_contig9173.2.1|Name=mRNA_A-nodosum_M_contig9173.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=449bp
ASLRGKGTLTTGSQTWCPVCFKDNRVPGQYKSKSLDGGQKCPGCGLKAHA
ACLRLRADRTWPCVECQCRKEGLSPKRLFEAHSTVLGAVASSGNKSSSCE
RDMTHVRTVLTSPKDSESMQPHGEGNPGALASKAPQVAELWATFHASTIR
SNADSSKRYTSEGRAHAGASFGDKPAAPPALHAHGSSIPSFPPAASGEKL
HQRKCARATAVTAQTPVRPPIGWKPFEVVKNRGEARSFSNRGRTVVGPAP
FSAAAKYRHYGVGTPPSSAHKPPLEDRLRRGTIGSVEAARTSRRSKVALG
GSSAGASVVICKTCKKKGRLKSGRTCAGCKQWWHANADCSAAARGSHPDP
SDDGNWVGGWRCQGCLDDWEDGLRARTAEVVKAWAEHEEKRERKATEFQA
AKEAAMAESIEAKRHGFMVDTVEVPPIPHPPAGILPFLDVSSIRDTGHR
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mRNA from alignment at A-nodosum_M_contig9173:10809..13790-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9173.2.1 ID=mRNA_A-nodosum_M_contig9173.2.1|Name=mRNA_A-nodosum_M_contig9173.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2982bp|location=Sequence derived from alignment at A-nodosum_M_contig9173:10809..13790- (Ascophyllum nodosum dioecious)
GCTTCGCTGCGGGGGAAAGGCACCTTGACCACGGGGAGCCAGACGTGGTG
TCCTGTGTGCTTCAAGGACAACAGAGTGCCTGGACAATATAAGTCGAAGA
GTCTTGACGGAGGACAGAAGTGCCCCGGGTGTGGCCTCAAGGCGCACGCA
GCCTGCCTGCGTCTCCGAGCCGACCGCACGTGGCCATGCGTCGAGTGCCA
ATGTCGGAAGGAAGGCTTATCTCCTAAGAGACTTTTCGAAGCGCATTCGA
CGGTGCTGGGGGCGGTGGCATCCTCGGGCAACAAAAGCAGCAGTTGCGAA
CGGGACATGACTCACGTACGGACAGTGCTAACCTCGCCCAAGGACTCCGA
GAGCATGCAACCGCACGGTGAGGGCAACCCAGGAGCCTTGGCGTCGAAAG
CGCCACAAGTGGCAGAACTGTGGGCCACATTCCATGCCAGCACAATCAGG
AGCAATGCTGATTCTTCAAAGAGGTATACGTCGGAGGGGCGAGCTCACGC
CGGCGCTTCGTTCGGCGACAAACCTGCTGCCCCGCCGGCCTTGCACGCCC
ACGGGAGTTCTATCCCCTCCTTTCCTCCCGCGGCATCAGGCGAGAAGTTA
CACCAACGCAAGTGCGCCAGAGCTACTGCAGTAACCGCCCAAACGCCTGT
GAGACCGCCTATTGGCTGGAAACCGTTTGAGGTGGTTAAGAATAGGGGGG
AAGCGCGCAGCTTCTCGAATCGTGGGCGAACGGTTGTCGGCCCGGCGCCG
TTCTCAGCGGCTGCCAAGTACAGGCACTATGGTGTAGGTACTCCTCCGTC
GAGCGCGCACAAACCGCCGCTAGAGGATCGATTGCGGCGCGGAACAATCG
GATCGGTGGAAGCCGCGCGAACTTCCCGGAGATCGAAGGTCGCGCTAGGG
GGAAGCTCGGCGGGGGCGTCTGTGGTAATTTGCAAGACCTGTAAAAAGAA
AGGCAGGCTGAAGTCGGGTAGGACCTGCGCCGGGTGCAAACAATGGTGGC
ATGCGAACGCGGATTGCTCGGCAGCTGCCCGAGGAAGCCATCCAGACCCC
AGTGACGATGGGAACTGGGTCGGGGGCTGGCGGTGCCAGGGGTGCCTCGA
TGATTGGGAGGACGGCCTGAGGGCTCGCACGGCCGAGGTGGTGAAGGCCT
GGGCGGAGCACGAGGAAAAACGTGAGCGAAAGGCGACGGAATTTCAGGCT
GCCAAGGAGGCTGCTATGGCGGAGAGCATCGAGGCTAAGCGGCACGGCTT
CATGGTAGACACCGTGGAAGTGGTGAGCGTCGTATTTGTTCGTTCATTCC
CAGGTATATTTCTGGAACCAAGGTGCACTCTACTCGGCGAAACCGAATCA
AGCCGTATCTTGTGTGTGTGCGTGTGTGTGAAATTGTGTATATTAAATTG
TACATAACCGCGCTCTCCGGCCCTGTCTTGCTAGTCATTTTATCCTACTC
GCATTGATCGTCCCAAGGGGCATCAATGAAACTTGTCAGTGGGTGTGGGA
AAGAGAGGCGTAAATTAATTGGTCCATGGTGACCTGCCTGCCAAGGCAGC
ACTCGTTCGGAACTACCTCGAGGTTTCCTGGCCCCGTGCCGGCGGACTCT
CGGCAGTGAACGCCATCGGTACGCAATTGCGTGACCCGAAAAACTCGGGA
CTGACCCGATGGTGTATGGCGGTTTAAAATAAATAAGTGGACGCCGCCGC
GGAACTCGGGAGGAATCCCGTAAGTAAGAACCAGATTCAGCCTGAGTATG
GAGATGAGCAGGCTGACGCGGGACGGGACTGCCGAACCCGTCTCGCGATA
CCAAATTCTCAGGCGCGAACGGGGACAGGGAAATATTAATTTTCCCCGTT
CAGCTGACCACGTGCAGGATTGGCAACCTTACGCGGTTGATCCATACTCT
TGCTATATGTGTGACTATTCATACATAATACATGTATGCTACTTGCGTTG
TTCCTCCCAATGAGGGGAGCAACATTATGTACGTATTCATAATATTTGTC
ACGATTGCACATAACAGCGCAATTCTTTGTGCATGTAATGATGTTTGGTG
TGTGTTTTCTTGAGGGAGGATAGGGACGGATACGATTTTTGCTGTCTTCT
GCCGCGCCACAGCGTGGTTCCTGCCTCTATAGCAACCACTTACAATCCCA
CAGTATTTAACAGTACTCTGGTTAGTGCATGCACAGCAGGCCTCGGTCAT
GGAAATACGTACCTGTATTCTGTTTCTCTCTCGATGCAGCCTAAGAAAAA
CCGAATCTCAAACTGCAGTGTTTTGAAAGTTCAAGGCACACCGAAGTACG
CCCTTTCAAAACGCGTACGTAGCGTTTACCCCATTGCCTTCTGAGGGGTG
ACTGAGAAAATTGTCTTTCAGGACGTGCATCCTCGAGAGGTCCTTTGTAT
TGTGATCTATGATACATTTGGTGCCTGGGGTGTAACAACCTACGGGGATC
GAATGCCGGTGTCCCCTGTCGAGTTTTCCTTGCAAAAACAGTTGCGATAC
AGACCCATTTTCTCTCGAACACGCAGACTAGATCTTCTCAAGATACCTAT
AATACTAACTTTTGGTGTGTGACCACCGGGCGACCCGTTGATAATGATAA
GATGATGATGACAATATGATGATGTAATGATGATGACAAGATGATGTAAT
GATGACGTAATGATGATGTAATGATGATGTAATGATGTACACGACGGAGT
AGCGTGGGCAGAATCTCCCTCCCCGGACTGTGTCGGGAAATTTTACTACA
GTCATGTCGTATGCTCCGTCACCTGCTTTACCGTGTGCCTATCACCGTAG
TCATTACAAGTACCTACAGTCCACAAGTATGCAAGACATTCTTTCTCCGC
GACCTTCCGGTGCCGTTGCTGTTTTCTGCTGTCTCCGTGGTGTCGTCCTG
TCCCCAGCCCCCCATTCCACACCCGCCGGCCGGCATTCTACCGTTCCTCG
ACGTGTCGTCCATCCGAGACACGGGTCACCGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9173:10809..13790-

>mRNA_A-nodosum_M_contig9173.2.1 ID=mRNA_A-nodosum_M_contig9173.2.1|Name=mRNA_A-nodosum_M_contig9173.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1347bp|location=Sequence derived from alignment at A-nodosum_M_contig9173:10809..13790- (Ascophyllum nodosum dioecious)
GCTTCGCTGCGGGGGAAAGGCACCTTGACCACGGGGAGCCAGACGTGGTG
TCCTGTGTGCTTCAAGGACAACAGAGTGCCTGGACAATATAAGTCGAAGA
GTCTTGACGGAGGACAGAAGTGCCCCGGGTGTGGCCTCAAGGCGCACGCA
GCCTGCCTGCGTCTCCGAGCCGACCGCACGTGGCCATGCGTCGAGTGCCA
ATGTCGGAAGGAAGGCTTATCTCCTAAGAGACTTTTCGAAGCGCATTCGA
CGGTGCTGGGGGCGGTGGCATCCTCGGGCAACAAAAGCAGCAGTTGCGAA
CGGGACATGACTCACGTACGGACAGTGCTAACCTCGCCCAAGGACTCCGA
GAGCATGCAACCGCACGGTGAGGGCAACCCAGGAGCCTTGGCGTCGAAAG
CGCCACAAGTGGCAGAACTGTGGGCCACATTCCATGCCAGCACAATCAGG
AGCAATGCTGATTCTTCAAAGAGGTATACGTCGGAGGGGCGAGCTCACGC
CGGCGCTTCGTTCGGCGACAAACCTGCTGCCCCGCCGGCCTTGCACGCCC
ACGGGAGTTCTATCCCCTCCTTTCCTCCCGCGGCATCAGGCGAGAAGTTA
CACCAACGCAAGTGCGCCAGAGCTACTGCAGTAACCGCCCAAACGCCTGT
GAGACCGCCTATTGGCTGGAAACCGTTTGAGGTGGTTAAGAATAGGGGGG
AAGCGCGCAGCTTCTCGAATCGTGGGCGAACGGTTGTCGGCCCGGCGCCG
TTCTCAGCGGCTGCCAAGTACAGGCACTATGGTGTAGGTACTCCTCCGTC
GAGCGCGCACAAACCGCCGCTAGAGGATCGATTGCGGCGCGGAACAATCG
GATCGGTGGAAGCCGCGCGAACTTCCCGGAGATCGAAGGTCGCGCTAGGG
GGAAGCTCGGCGGGGGCGTCTGTGGTAATTTGCAAGACCTGTAAAAAGAA
AGGCAGGCTGAAGTCGGGTAGGACCTGCGCCGGGTGCAAACAATGGTGGC
ATGCGAACGCGGATTGCTCGGCAGCTGCCCGAGGAAGCCATCCAGACCCC
AGTGACGATGGGAACTGGGTCGGGGGCTGGCGGTGCCAGGGGTGCCTCGA
TGATTGGGAGGACGGCCTGAGGGCTCGCACGGCCGAGGTGGTGAAGGCCT
GGGCGGAGCACGAGGAAAAACGTGAGCGAAAGGCGACGGAATTTCAGGCT
GCCAAGGAGGCTGCTATGGCGGAGAGCATCGAGGCTAAGCGGCACGGCTT
CATGGTAGACACCGTGGAAGTGCCCCCCATTCCACACCCGCCGGCCGGCA
TTCTACCGTTCCTCGACGTGTCGTCCATCCGAGACACGGGTCACCGT
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