prot_A-nodosum_M_contig910.5.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig910.5.1
Unique Nameprot_A-nodosum_M_contig910.5.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length229
Homology
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.150e-31
Identity = 76/199 (38.19%), Postives = 114/199 (57.29%), Query Frame = 0
Query:   40 VNATKEIDLRLVRC---SGLRLSVYAGADYATASND--------RRSV-SLMWLSVMTRPDIANELRACARHSHNPSPRHWKALLQVAAYVNTTKEIGLKFVRGFGLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTRAVLVFLQPELSDMRVDIFGDNEAAKAI 226
            ++ T  ID  + R    S  R+    GAD      D        R ++ S+MW+S  +RPD++  +RA ARH+H P+ RHW A+ ++  Y+  T+++G+ + RG GL L+ Y DA YA  + DRRSVSG+A  +G T +   S  Q  V+ ++ EAEY+A     KEALF RAVL+F+ PE     + +  DN+ A A+
Sbjct:  495 ISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSMEAEYIAAGEGVKEALFVRAVLLFVAPETRGSSIQVLEDNQGAMAL 692          
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 4.460e-30
Identity = 70/153 (45.75%), Postives = 92/153 (60.13%), Query Frame = 0
Query:   77 SLMWLSVMTRPDIANELRACARHSHNPSPRHWKALLQVAAYVNTTKEIGLKFVRGF--GLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTRAVLVFLQPELSDMRVDIFGDNEAAKAIA 227
            SL+W++++TRPDIAN +RA AR+   P   HW+A L +  Y   T   G+ F RG   G  L  +ADADYA+ + DRRSVSG  V+    AI W S  QKCVT +T +AEYVA+    KE LF R V  F+ P+     + ++ DNE A  IA
Sbjct:  169 SLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIPLYEDNEGAIQIA 321          
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5KXX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX2_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.350e-29
Identity = 62/150 (41.33%), Postives = 93/150 (62.00%), Query Frame = 0
Query:   77 SLMWLSVMTRPDIANELRACARHSHNPSPRHWKALLQVAAYVNTTKEIGLKFVRGFGLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTRAVLVFLQPELSDMRVDIFGDNEAAKAI 226
            S+MW+S  +RPD++  +RA ARH+H PS RHW A+ ++  Y+  T+++G+ + +G GL+L+ Y +A YA  + D+ SVSG+A   G       S  Q  VT ++ EAEY+A     KEALF RA L F+ PE S   + +  DN+ A A+
Sbjct:   41 SMMWVSTFSRPDVSFAVRAVARHAHAPSKRHWDAIQKILGYLQGTRDLGITYQQGSGLRLAVYVNASYAD-TEDKHSVSGLATTGGG------SKTQSIVTLSSTEAEYIAAGEGVKEALFVRAALSFVAPETSGSNIQVLEDNQGAIAV 183          
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.570e-29
Identity = 70/153 (45.75%), Postives = 93/153 (60.78%), Query Frame = 0
Query:   77 SLMWLSVMTRPDIANELRACARHSHNPSPRHWKALLQVAAYVNTTKEIGLKFVRGF--GLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTRAVLVFLQPELSDMRVDIFGDNEAAKAIA 227
            SL+W++++TRPDIAN +RA AR+S  P   HWKA L +  Y   T  +G+ F RG   G  L A+ DADYA+ + DRRSVSG  V+    AI W S  Q CVT +T ++EYVA+    KE LF R V  F+ P+     + ++ DNE A  IA
Sbjct:  540 SLLWIALLTRPDIANSVRAVARYSSAPKLIHWKAALSILGYAFRTSSLGISFQRGTVSGFTLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIA 692          
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 5.670e-29
Identity = 70/153 (45.75%), Postives = 92/153 (60.13%), Query Frame = 0
Query:   77 SLMWLSVMTRPDIANELRACARHSHNPSPRHWKALLQVAAYVNTTKEIGLKFVRGF--GLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTRAVLVFLQPELSDMRVDIFGDNEAAKAIA 227
            SL+W++++TRPDIAN +RA AR+   P   HW+A L +  Y   T   G+ F RG   G  L  +ADADYA+ + DRRSVSG  V+    AI W S  QKCVT +T +AEYVA+    KE LF R V  F+ P+     + ++ DNE A  IA
Sbjct:  473 SLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIA 625          
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 6.810e-29
Identity = 69/153 (45.10%), Postives = 91/153 (59.48%), Query Frame = 0
Query:   77 SLMWLSVMTRPDIANELRACARHSHNPSPRHWKALLQVAAYVNTTKEIGLKFVRGF--GLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTRAVLVFLQPELSDMRVDIFGDNEAAKAIA 227
            SL+W++++TRPDIAN +RA AR+S  P   HWKA L +  Y   T   G+ F  G   G  L  + +ADYA+ + DRRSVSG  V+    AI W S  QKCVT +T +AEYVA+    KE LF R V  F+ P+     + ++ DNE A  IA
Sbjct:  221 SLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIA 373          
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5KG67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG67_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 7.930e-29
Identity = 71/153 (46.41%), Postives = 92/153 (60.13%), Query Frame = 0
Query:   77 SLMWLSVMTRPDIANELRACARHSHNPSPRHWKALLQVAAYVNTTKEIGLKFVRGF--GLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTRAVLVFLQPELSDMRVDIFGDNEAAKAIA 227
            SL+W++++TRPDIAN +RA AR+S  P   HWKA L +  Y   T   G+ F RG   G  L  + DADYA+ + DRRSVSG  V+    AI W S AQKCVT +T  AE+VA+    KE LF R V  F+ P+     + ++ DNE A  IA
Sbjct:  223 SLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGICFQRGTVSGFTLITFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKAQKCVTLSTTPAEFVAVADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIA 375          
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.340e-27
Identity = 69/153 (45.10%), Postives = 89/153 (58.17%), Query Frame = 0
Query:   77 SLMWLSVMTRPDIANELRACARHSHNPSPRHWKALLQVAAYVNTTKEIGLKFVRGF--GLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTRAVLVFLQPELSDMRVDIFGDNEAAKAIA 227
            SL+W++++TRPDIAN +RA AR+S  P   HWKA L    Y   T   G+ F RG   G  L  +  ADYA+ + DRRS SG  V+    AI W S  QKCVT +T +AEYVA+    KE LF R V  F+ P+     + ++ DNE A  IA
Sbjct:  402 SLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSFLGYAVRTSSFGISFQRGTVSGFSLITFVYADYASRAADRRSESGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIA 554          
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5KKT4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT4_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.510e-24
Identity = 67/154 (43.51%), Postives = 89/154 (57.79%), Query Frame = 0
Query:   77 SLMWLSVMTRPDIANELRACARHSHNPSPRHWKALLQVAAYVNTTKEIGLKFVRGF--GLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEA-LFTRAVLVFLQPELSDMRVDIFGDNEAAKAIA 227
            SL+W++++TRPDIAN +RA AR+   P+  HWKA   +  YV     +G  F RG   G  L A+ DADYA+ +  RRSVSG  V+    AI W S  QKCVT +T +AEYVA+     E  LF R V  F+ P+     + ++ DNE    IA
Sbjct:  691 SLLWIALLTRPDIANSVRAVARYCSAPTLIHWKAARSILGYVVRASSLGTSFQRGTVSGSSLIAFVDADYASRAAHRRSVSGGVVMYAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGMEMILFLRQVWRFMLPKELRPCIPLYEDNEGTIKIA 844          
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5JLU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU1_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.060e-24
Identity = 74/185 (40.00%), Postives = 94/185 (50.81%), Query Frame = 0
Query:   26 SPRHWKALLQVAAYVNATKEIDLRLVRCSGLRLSVYAGADYATASNDRRSV---------SLMWLSVMTRPDIANELRACARHSHNPSPRHWKALLQVAAYVNTTKEIGLKFVRGF--GLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTR 199
            +PR W ALL+          +DL   +C          AD      D  SV         SL+W +++TRP IAN +RA AR+   P   HWKA L +  Y      +G+ F RG   G  L A+ DADYA+ + DRRSVSG  V+    AI W S  QKCVT +T +AEYVA+    KE LF R
Sbjct: 1320 APREWYALLKKCL-------LDLGFEQCM---------ADSCDFDLDEPSVEYPFRALVGSLLWTALLTRPGIANSVRAVARYCSAPKLIHWKAALSILGYAVRNSSLGISFQRGTVSGFSLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLR 1488          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K274_9PHAE1.150e-3138.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWK8_9PHAE4.460e-3045.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KXX2_9PHAE3.350e-2941.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWA6_9PHAE3.570e-2945.75Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JR13_9PHAE5.670e-2945.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRZ9_9PHAE6.810e-2945.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KG67_9PHAE7.930e-2946.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K307_9PHAE3.340e-2745.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKT4_9PHAE1.510e-2443.51Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JLU1_9PHAE3.060e-2440.00Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 81..158
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 4..77
NoneNo IPR availablePANTHERPTHR11439:SF308SUBFAMILY NOT NAMEDcoord: 81..158
NoneNo IPR availablePANTHERPTHR11439:SF308SUBFAMILY NOT NAMEDcoord: 4..77
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 149..227
e-value: 2.07014E-21
score: 84.4421

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig910contigA-nodosum_M_contig910:57220..57906 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig910.5.1mRNA_A-nodosum_M_contig910.5.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig910 53815..58038 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig910.5.1 ID=prot_A-nodosum_M_contig910.5.1|Name=mRNA_A-nodosum_M_contig910.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=229bp
MWLSVMTRPDIANELRACAYHSHDPSPRHWKALLQVAAYVNATKEIDLRL
VRCSGLRLSVYAGADYATASNDRRSVSLMWLSVMTRPDIANELRACARHS
HNPSPRHWKALLQVAAYVNTTKEIGLKFVRGFGLKLSAYADADYAAASND
RRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTRA
VLVFLQPELSDMRVDIFGDNEAAKAIAY*
back to top