mRNA_A-nodosum_M_contig910.5.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5KU45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU45_9PHAE) HSP 1 Score: 141 bits (356), Expect = 3.930e-30 Identity = 89/252 (35.32%), Postives = 137/252 (54.37%), Query Frame = 2
Query: 2591 KKDGEPGGNEEFPKYCALVGSLMWLSVMTRPDIANELRACAYHSHDPSPRHWKALLQVAAYVNAT---KEIDLRLVRCSGLRLSVYAGADYATASNDRRSV-SLMWLSVMTRPDIANELRACARHSHNPSPRHWKALLQVAAYVNTTKEIGLKFVRGFGLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTRAVLVFLQPELSDMRVDIFGDNEAAKAI 3334
K++ E GG E+P A +GS+MW+S +RPD++ +RA A H+H P+ RHW A+ + Y+ K D G ++ R ++ S+MW+ + PD++ +RA ARH+H P+ RHW A+ + Y+ T+++G+ + RG GL L+ Y A YA + DRRSVSG+A +G T + Q V+ ++ EAEY+A KEALF AVL F+ PE + D+ A + I
Sbjct: 484 KREDEEGG--EWPVREA-IGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKNLGYLKXXXWPKREDEE-------------GGEWPV----REAIGSMMWVLAFSCPDVSFAVRAVARHAHAPAKRHWDAIQKNLGYLKETRDLGITYQRGSGLGLAVYVHASYAD-TEDRRSVSGLATTVGGTVVSHGYKTQSIVSLSSTEAEYIAAGEGVKEALFVCAVLSFVAPETRGSSIQEMADSVAGENI 714
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5L3H1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H1_9PHAE) HSP 1 Score: 131 bits (329), Expect = 1.970e-27 Identity = 91/248 (36.69%), Postives = 128/248 (51.61%), Query Frame = 2
Query: 2591 KKDGEPGGNEEFPKYCALVGSLMWLSVMTRPDIANELRACAYHSHDPSPRHWKALLQVAAYVNATKEIDLRLVRCSGLRLSVYAGADYATASNDRRSVSLMWLSVMTRPDIANELRACARHSHNPSPRHWKALLQVAAYVNTTKEIGLKFVRGFGLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTRAVLVFLQPELSDMRVDIFGDNEAAKAI 3334
K+D EP + P AL G LMW+ V TRPDIA L +H P+ R W+ALL+V +++NATK++ L VR SGL L V+ A YA DR ++ PDIA L + +H+P+ R W+ALL+V +++N TK++ L +VRG GL L + DA YA DR +Y+A KEAL RAVL F+ PE S +++ + DN+ A A+
Sbjct: 506 KRDDEP--TVDKPVREAL-GCLMWV-VHTRPDIALPLNKVQKVAHSPTDRIWQALLRVMSHLNATKDLSLTYVRGSGLDLGVWVDASYADDVVDR---------LILXPDIALPLNKVQKVAHSPTDRIWQALLRVMSHLNATKDLSLTYVRGSGLDLGVWVDASYADDVVDR--------------------------------QYLAAGERVKEALHVRAVLSFVAPETSGVKIQVLEDNKGALAL 708
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE) HSP 1 Score: 131 bits (329), Expect = 2.040e-27 Identity = 76/199 (38.19%), Postives = 114/199 (57.29%), Query Frame = 2
Query: 2774 VNATKEIDLRLVRC---SGLRLSVYAGADYATASND--------RRSV-SLMWLSVMTRPDIANELRACARHSHNPSPRHWKALLQVAAYVNTTKEIGLKFVRGFGLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTRAVLVFLQPELSDMRVDIFGDNEAAKAI 3334
++ T ID + R S R+ GAD D R ++ S+MW+S +RPD++ +RA ARH+H P+ RHW A+ ++ Y+ T+++G+ + RG GL L+ Y DA YA + DRRSVSG+A +G T + S Q V+ ++ EAEY+A KEALF RAVL+F+ PE + + DN+ A A+
Sbjct: 495 ISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSMEAEYIAAGEGVKEALFVRAVLLFVAPETRGSSIQVLEDNQGAMAL 692
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE) HSP 1 Score: 130 bits (327), Expect = 8.040e-27 Identity = 95/289 (32.87%), Postives = 143/289 (49.48%), Query Frame = 2
Query: 2591 KKDGEPGGNEEFPKYCALVGSLMWLSVMTRPDIANELRACAYHSHDPSPRHWKALLQVAAYVNATKEIDLRLVRCSGLRLSVYAGADYATASNDRRSVSLMWLSV---------MTRPDIA---NELRACARHSHNPSPRHWKALLQVAA-----------------------------YVNTTKEIGLKFVRGFGLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTRAVLVFLQPELSDMRVDIFGDNEAAKAI 3334
K++ E GG E+P A +GS+MW+S +RPD++ +RA H+H P+ RHW A+ ++ Y+ T+++ + R SGL L+VY A YA + DRRSVS + +V T+ ++ E A +A+L A Y T+++G+ + RG GL L+ Y DA YA + D+RSVS +A +G T + S Q V+ ++ EAEY A KEALF RAVL F+ PE S + + DN+ A A+
Sbjct: 953 KREDEEGG--EWPVREA-IGSMMWVSTFSRPDVSFAVRAVVRHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPEASGSSIQVLEDNQGAVALVQNALSSXGYQKETRDLGITYQRGSGLGLAVYVDARYAD-TEDKRSVSEMATTVGGTVVSHGSKTQSIVSLSSTEAEYFAAGEGVKEALFVRAVLSFVAPEASGSSIQVLEDNQGAVAL 1236
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE) HSP 1 Score: 123 bits (309), Expect = 1.830e-26 Identity = 70/153 (45.75%), Postives = 92/153 (60.13%), Query Frame = 2
Query: 2885 SLMWLSVMTRPDIANELRACARHSHNPSPRHWKALLQVAAYVNTTKEIGLKFVRGF--GLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTRAVLVFLQPELSDMRVDIFGDNEAAKAIA 3337
SL+W++++TRPDIAN +RA AR+ P HW+A L + Y T G+ F RG G L +ADADYA+ + DRRSVSG V+ AI W S QKCVT +T +AEYVA+ KE LF R V F+ P+ + ++ DNE A IA
Sbjct: 169 SLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIPLYEDNEGAIQIA 321
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5KXX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX2_9PHAE) HSP 1 Score: 118 bits (295), Expect = 7.020e-26 Identity = 62/150 (41.33%), Postives = 93/150 (62.00%), Query Frame = 2
Query: 2885 SLMWLSVMTRPDIANELRACARHSHNPSPRHWKALLQVAAYVNTTKEIGLKFVRGFGLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTRAVLVFLQPELSDMRVDIFGDNEAAKAI 3334
S+MW+S +RPD++ +RA ARH+H PS RHW A+ ++ Y+ T+++G+ + +G GL+L+ Y +A YA + D+ SVSG+A G S Q VT ++ EAEY+A KEALF RA L F+ PE S + + DN+ A A+
Sbjct: 41 SMMWVSTFSRPDVSFAVRAVARHAHAPSKRHWDAIQKILGYLQGTRDLGITYQQGSGLRLAVYVNASYAD-TEDKHSVSGLATTGGG------SKTQSIVTLSSTEAEYIAAGEGVKEALFVRAALSFVAPETSGSNIQVLEDNQGAIAV 183
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5KVP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP5_9PHAE) HSP 1 Score: 122 bits (307), Expect = 1.010e-25 Identity = 74/199 (37.19%), Postives = 107/199 (53.77%), Query Frame = 1
Query: 1723 RKIQDLPPPPTTQEEVRRSPFRKAFEHSQKLELNRMLDVGCFKVVDEKDVPKGRKVVRSQWVHTCKGDGHENCLKTNPEW----------LRGFTQAHDVDYHETTSPTPASAPVKMIAAIANEKGLPAFHLDLSQAFV*APLEEEINMRFPSGCGELSDKVMKLLKCQYGLKQAGREWHLLLVTWLVEKS-EWSSAKP 2286
++ D+ PPP T V +S +R+ +E + + E L F +D PK R+ V S+W C KTN E RGF+Q +VDY ++SP P+SA +K++ A+ANEKG+ H D+ QA+ A L+EEI +R P+GCGE S K+++ + YGLKQ+GR+W LVE E A P
Sbjct: 69 KRPSDVEPPPMTVAGVAKSVYREGWEQAMREEFKGHLGTRTFSFID--GAPKERRPVSSKWCF---------CWKTNKEGKIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLHHWDVKQAYTHATLDEEIFLRLPAGCGEKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADP 256
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE) HSP 1 Score: 121 bits (303), Expect = 2.510e-25 Identity = 69/153 (45.10%), Postives = 91/153 (59.48%), Query Frame = 2
Query: 2885 SLMWLSVMTRPDIANELRACARHSHNPSPRHWKALLQVAAYVNTTKEIGLKFVRGF--GLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTRAVLVFLQPELSDMRVDIFGDNEAAKAIA 3337
SL+W++++TRPDIAN +RA AR+S P HWKA L + Y T G+ F G G L + +ADYA+ + DRRSVSG V+ AI W S QKCVT +T +AEYVA+ KE LF R V F+ P+ + ++ DNE A IA
Sbjct: 221 SLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIA 373
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5KG67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG67_9PHAE) HSP 1 Score: 122 bits (306), Expect = 4.200e-25 Identity = 71/153 (46.41%), Postives = 92/153 (60.13%), Query Frame = 2
Query: 2885 SLMWLSVMTRPDIANELRACARHSHNPSPRHWKALLQVAAYVNTTKEIGLKFVRGF--GLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTRAVLVFLQPELSDMRVDIFGDNEAAKAIA 3337
SL+W++++TRPDIAN +RA AR+S P HWKA L + Y T G+ F RG G L + DADYA+ + DRRSVSG V+ AI W S AQKCVT +T AE+VA+ KE LF R V F+ P+ + ++ DNE A IA
Sbjct: 223 SLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGICFQRGTVSGFTLITFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKAQKCVTLSTTPAEFVAVADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIA 375
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE) HSP 1 Score: 123 bits (309), Expect = 5.690e-25 Identity = 70/153 (45.75%), Postives = 92/153 (60.13%), Query Frame = 2
Query: 2885 SLMWLSVMTRPDIANELRACARHSHNPSPRHWKALLQVAAYVNTTKEIGLKFVRGF--GLKLSAYADADYAAASNDRRSVSGVAVVLGDTAIDWKSSAQKCVTTTTCEAEYVALCVASKEALFTRAVLVFLQPELSDMRVDIFGDNEAAKAIA 3337
SL+W++++TRPDIAN +RA AR+ P HW+A L + Y T G+ F RG G L +ADADYA+ + DRRSVSG V+ AI W S QKCVT +T +AEYVA+ KE LF R V F+ P+ + ++ DNE A IA
Sbjct: 473 SLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIA 625 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig910.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig910.5.1 >prot_A-nodosum_M_contig910.5.1 ID=prot_A-nodosum_M_contig910.5.1|Name=mRNA_A-nodosum_M_contig910.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=229bp MWLSVMTRPDIANELRACAYHSHDPSPRHWKALLQVAAYVNATKEIDLRLback to top mRNA from alignment at A-nodosum_M_contig910:53815..58038+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig910.5.1 ID=mRNA_A-nodosum_M_contig910.5.1|Name=mRNA_A-nodosum_M_contig910.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4224bp|location=Sequence derived from alignment at A-nodosum_M_contig910:53815..58038+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig910:53815..58038+ >mRNA_A-nodosum_M_contig910.5.1 ID=mRNA_A-nodosum_M_contig910.5.1|Name=mRNA_A-nodosum_M_contig910.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=687bp|location=Sequence derived from alignment at A-nodosum_M_contig910:53815..58038+ (Ascophyllum nodosum dioecious)back to top |