prot_A-nodosum_M_contig91.2.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig91.2.2
Unique Nameprot_A-nodosum_M_contig91.2.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length215
Homology
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BLAST of mRNA_A-nodosum_M_contig91.2.2 vs. uniprot
Match: D7FRB9_ECTSI (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRB9_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.880e-20
Identity = 50/90 (55.56%), Postives = 61/90 (67.78%), Query Frame = 0 
Query:    2 TFDLKRSFILDELIVYFHKSNDTGRDLNPFNISISADEETGYIYSFNGVNNGKTPLGTGENFSFPARSSGRYVRFTPILADEQWCSINEV 91
            TFDL  S  L +L +YF+KSN+  R  NPF +S S D  T +  SF  +N   TPLG GE+F+FP  SSGRYVRFT  LAD+QW S+NEV
Sbjct:   30 TFDLGSSQSLIKLTIYFYKSNEEDRVTNPFVVSTSTDGTT-FTTSFEDINTIPTPLGEGEDFAFPTGSSGRYVRFTGDLADDQWLSVNEV 118
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BLAST of mRNA_A-nodosum_M_contig91.2.2 vs. uniprot
Match: A0A6H5JTK7_9PHAE (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK7_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.830e-17
Identity = 49/89 (55.06%), Postives = 58/89 (65.17%), Query Frame = 0 
Query:    2 TFDLKRSFILDELIVYFHKSNDTGRDLNPFNISISADEETGYIYSFNGVNNGKTPLGTGENFSFPARSSGRYVRFTPILADEQWCSINE 90
            TFDL  S  L +L +YF+K +D  R  NPF +S S D  T Y  SF  VN   T +G GE+F+FP  SSGRYVRFT  LAD+QW SINE
Sbjct:   89 TFDLGSSQSLTKLTIYFYKCDDVDRATNPFIVSTSTDGTT-YTTSFEDVNTIPTAIGAGEDFAFPTGSSGRYVRFTGELADDQWLSINE 176
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig91.2.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRB9_ECTSI2.880e-2055.56F5/8 type C domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JTK7_9PHAE4.830e-1755.06F5/8 type C domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.120.260coord: 1..93
e-value: 1.1E-6
score: 30.9
IPR000421Coagulation factor 5/8 C-terminal domainPROSITEPS50022FA58C_3coord: 1..98
score: 9.348432
IPR008979Galactose-binding-like domain superfamilySUPERFAMILY49785Galactose-binding domain-likecoord: 2..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig91contigA-nodosum_M_contig91:1606..9445 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig91.2.2mRNA_A-nodosum_M_contig91.2.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig91 1606..61519 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig91.2.2 ID=prot_A-nodosum_M_contig91.2.2|Name=mRNA_A-nodosum_M_contig91.2.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=215bp
MTFDLKRSFILDELIVYFHKSNDTGRDLNPFNISISADEETGYIYSFNGV
NNGKTPLGTGENFSFPARSSGRYVRFTPILADEQWCSINEVTSLVLMSAV
THDTFEEPYAGTIDITCAPADTPSLPTNSLVPSVAPTMTVIMTPTSVPTV
APVDTPTGDNDEGNQNSVDGDYIPMIIGSLVGAVAVLGLVGFVAYRKIKT
RPPIPPPLPSYDDLV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000421FA58C
IPR008979Galactose-bd-like_sf