mRNA_A-nodosum_M_contig91.2.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig91.2.2 vs. uniprot
Match: A0A6H5JTK7_9PHAE (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK7_9PHAE) HSP 1 Score: 174 bits (442), Expect = 2.890e-42 Identity = 94/187 (50.27%), Postives = 111/187 (59.36%), Query Frame = 1
Query: 256 MLLLLLLILGASSPAGGVELDVADVTNLTVTASKYDNRSYVVDNDFAGCYDTGCLPKYVTDGLLNDEPQSRWSCSLDIPSAFADCYMTFDLKQPFTFTDLAVYFHKSDDLDRTTNPFNISISADDLVYEYSFNGVNTPGTPLGTGETFPFPTGSGGRYVRFTPILAEGQWCSINEVEIYVDFETSGP 816
+L+ L L LG AGGVE +VTA+KYD R+ +D GC GC P + DG LND P+SRWSC + +CY TFDL + T L +YF+K DD+DR TNPF +S S D Y SF VNT T +G GE F FPTGS GRYVRFT LA+ QW SINE EIYVD T P
Sbjct: 10 LLVALSLALGGVRLAGGVE----QKAEYSVTATKYDTRA----SDSNGCGTDGCSPDLMNDGDLNDVPESRWSCETALAGTEFECYATFDLGSSQSLTKLTIYFYKCDDVDRATNPFIVSTSTDGTTYTTSFEDVNTIPTAIGAGEDFAFPTGSSGRYVRFTGELADDQWLSINEAEIYVDVATPAP 188
BLAST of mRNA_A-nodosum_M_contig91.2.2 vs. uniprot
Match: D7FRB9_ECTSI (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRB9_ECTSI) HSP 1 Score: 142 bits (359), Expect = 1.100e-35 Identity = 69/129 (53.49%), Postives = 82/129 (63.57%), Query Frame = 1
Query: 430 VTDGLLNDEPQSRWSCSLDIPSAFADCYMTFDLKQPFTFTDLAVYFHKSDDLDRTTNPFNISISADDLVYEYSFNGVNTPGTPLGTGETFPFPTGSGGRYVRFTPILAEGQWCSINEVEIYVDFETSGP 816
+ DG LND P SRWSC + +CY TFDL + L +YF+KS++ DR TNPF +S S D + SF +NT TPLG GE F FPTGS GRYVRFT LA+ QW S+NEVEIYVD T P
Sbjct: 1 MNDGNLNDVPDSRWSCETALEGTEFECYATFDLGSSQSLIKLTIYFYKSNEEDRVTNPFVVSTSTDGTTFTTSFEDINTIPTPLGEGEDFAFPTGSSGRYVRFTGDLADDQWLSVNEVEIYVDVATPAP 129 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig91.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig91.2.2 >prot_A-nodosum_M_contig91.2.2 ID=prot_A-nodosum_M_contig91.2.2|Name=mRNA_A-nodosum_M_contig91.2.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=215bp MTFDLKRSFILDELIVYFHKSNDTGRDLNPFNISISADEETGYIYSFNGVback to top mRNA from alignment at A-nodosum_M_contig91:1606..61519- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig91.2.2 ID=mRNA_A-nodosum_M_contig91.2.2|Name=mRNA_A-nodosum_M_contig91.2.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=59914bp|location=Sequence derived from alignment at A-nodosum_M_contig91:1606..61519- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig91:1606..61519- >mRNA_A-nodosum_M_contig91.2.2 ID=mRNA_A-nodosum_M_contig91.2.2|Name=mRNA_A-nodosum_M_contig91.2.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=645bp|location=Sequence derived from alignment at A-nodosum_M_contig91:1606..61519- (Ascophyllum nodosum dioecious)back to top |