prot_A-nodosum_M_contig9087.3.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9087.3.1
Unique Nameprot_A-nodosum_M_contig9087.3.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length286
Homology
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BLAST of mRNA_A-nodosum_M_contig9087.3.1 vs. uniprot
Match: D8LEW8_ECTSI (CDT1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW8_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 1.130e-49
Identity = 124/283 (43.82%), Postives = 157/283 (55.48%), Query Frame = 0 
Query:    1 MFQSLEQVLLLFRRRKQTAFFRQVKAGVEAMCGRSFTTHHLAQILFVQPDAYKVSSKTDSRPIRGGYRLRDLFIEFGEAEDPIEASPRSRESGRIEHERRVGGK--TGDEKERGASFDGPGG--------TGIESVSSQRREKFRRMLLAASARHCKCAADRE----RQSTFCECSCLPGAPLPDISPLRVEGNPCLSPSGIRLSTSAG--TKALSHIRGLLESGGVTRDGG---------------------------ESEGSDAPKNLDALRKQLRQKDML 240
            MF +LEQVL LFRRR+Q    +Q+K  VE MCGRSFT  HLA+I FVQPDAYK+SS+TD+RP RGGYRL+D+FIE G +  P + +    ++     +R VG     G     GA  DG  G         G E++S++RRE F R+L +A ARHCKC   R       +   ECSCLP APLPD  PLR +G       G R +  AG   ++ S  +GL  S G  R GG                           + EGSDAPKN++ALR++LRQKD L
Sbjct:  207 MFLALEQVLALFRRRRQATLLKQIKPAVEGMCGRSFTRQHLARIAFVQPDAYKLSSRTDARPTRGGYRLKDIFIETGPSPPPADEACLDDDTQGARRDR-VGKAPAAGKGAVAGADRDGRNGGDTGGHSIAGGEALSARRREIFLRLLASAKARHCKCGGSRGIAGGPSAPRDECSCLPQAPLPDTRPLRADG----IGGGSRAAPDAGGAVESPSTSQGLERSPGDGRSGGGGGGNLLPGTFRGGCVASGMGGGRVDYDEEGSDAPKNVEALRERLRQKDAL 484
[Close]
BLAST of mRNA_A-nodosum_M_contig9087.3.1 vs. uniprot
Match: A0A6H5K955_9PHAE (CDT1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K955_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 2.970e-49
Identity = 123/292 (42.12%), Postives = 152/292 (52.05%), Query Frame = 0 
Query:    1 MFQSLEQVLLLFRRRKQTAFFRQVKAGVEAMCGRSFTTHHLAQILFVQPDAYKVSSKTDSRPIRGGYRLRDLFIEFGEAEDPIEASPRSRESGRIEHERRVGGKTGDEKERGASFDGP----------GGTGIESVSSQRREKFRRMLLAASARHCKCAADR----ERQSTFCECSCLPGAPLPDISPLRVEGNPCLSPSGIRLSTSAGTKALSHIRGLLES------------------GGV-------TRDGG-------------ESEGSDAPKNLDALRKQLRQKDML 240
            MF +LEQVL LFRRR+Q    +Q+K  VE MCGRSFT  HLAQI FVQPDAYK+SSKTD+RP RGGYRLRD+FIE G +  P + +    ++     +R VG      K   A  D               G E++S++RR  F R+L +A ARHCKC        E  +   ECSCLP APLPD  PLR +G             S G++A +H  G  ES                  GG+       T  GG             + EG DAPKNL+ALR++LRQKD L
Sbjct:    1 MFLALEQVLTLFRRRRQATLLKQIKPAVEGMCGRSFTRQHLAQIAFVQPDAYKLSSKTDARPTRGGYRLRDIFIETGPSPPPADEACLDDDTQGARRDR-VGKAPAAGKGAVAGADXXXXXXXXXXXRSNAGGEALSARRRGIFLRLLASARARHCKCGGSEGITNEPSAPRDECSCLPQAPLPDTRPLRADG------------ISGGSRAAAHAGGAAESPSTSQGLERSPVDGRCGGGGIGGNLLPGTSRGGCVASGMSGGRVDYDEEGPDAPKNLEALRERLRQKDAL 279
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9087.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEW8_ECTSI1.130e-4943.82CDT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K955_9PHAE2.970e-4942.12CDT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014939CDT1 Geminin-binding domain-likeSMARTSM01075CDT1_2coord: 1..171
e-value: 5.5E-4
score: 14.5
IPR014939CDT1 Geminin-binding domain-likePFAMPF08839CDT1coord: 1..105
e-value: 7.7E-15
score: 55.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..114
NoneNo IPR availablePANTHERPTHR28637:SF1DNA REPLICATION FACTOR CDT1coord: 1..171
IPR045173DNA replication factor Cdt1PANTHERPTHR28637DNA REPLICATION FACTOR CDT1coord: 1..171
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 1..143

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9087contigA-nodosum_M_contig9087:16510..18269 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9087.3.1mRNA_A-nodosum_M_contig9087.3.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9087 16415..18480 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9087.3.1 ID=prot_A-nodosum_M_contig9087.3.1|Name=mRNA_A-nodosum_M_contig9087.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=286bp
MFQSLEQVLLLFRRRKQTAFFRQVKAGVEAMCGRSFTTHHLAQILFVQPD
AYKVSSKTDSRPIRGGYRLRDLFIEFGEAEDPIEASPRSRESGRIEHERR
VGGKTGDEKERGASFDGPGGTGIESVSSQRREKFRRMLLAASARHCKCAA
DRERQSTFCECSCLPGAPLPDISPLRVEGNPCLSPSGIRLSTSAGTKALS
HIRGLLESGGVTRDGGESEGSDAPKNLDALRKQLRQKDMLRSGVSEYHSL
ISFGHRAASHGMFFAFHTRSLWRFSSLEVEIFCRK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014939CDT1_Gemini-bd-like
IPR045173Cdt1
IPR036390WH_DNA-bd_sf