prot_A-nodosum_M_contig9038.4.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9038.4.1
Unique Nameprot_A-nodosum_M_contig9038.4.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length85
Homology
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: A0A6B9TNT0_SARFS (Cytochrome b559 subunit alpha n=16 Tax=Fucales TaxID=3009 RepID=A0A6B9TNT0_SARFS)

HSP 1 Score: 173 bits (438), Expect = 7.450e-55
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0
Query:    1 MSGGSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 84
            MSGGSTGER FSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYF QDRQQVPLVNDRFNVTQEIEDFTRGL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFNVTQEIEDFTRGL 84          
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: PSBE_PHATC (Cytochrome b559 subunit alpha n=39 Tax=cellular organisms TaxID=131567 RepID=PSBE_PHATC)

HSP 1 Score: 162 bits (410), Expect = 1.400e-50
Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 MSGGSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 84
            MSGGSTGER FSDIITSVRYWIIHSITIPSLF+SGWLFVSTGLAYDVFGTPRPNEYF QDRQQ+PLVNDRF+  QE+ED T+GL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFVSGWLFVSTGLAYDVFGTPRPNEYFTQDRQQIPLVNDRFSAKQELEDLTKGL 84          
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: PSBE_THAPS (Cytochrome b559 subunit alpha n=117 Tax=Eukaryota TaxID=2759 RepID=PSBE_THAPS)

HSP 1 Score: 161 bits (407), Expect = 4.010e-50
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 MSGGSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 84
            MSGGSTGER FSDIITSVRYWIIH+ITIPSLF+SGWLF+STGLAYDVFGTPRPNEYF QDRQQVPLVNDRF+  QE+ED T+GL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHTITIPSLFVSGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKGL 84          
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: A0A0D3M5E1_9STRA (Cytochrome b559 subunit alpha n=6 Tax=Eukaryota TaxID=2759 RepID=A0A0D3M5E1_9STRA)

HSP 1 Score: 159 bits (401), Expect = 3.200e-49
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 0
Query:    4 GSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 84
            GSTGER FSDIITS+RYWIIHSITIPSLF+SGWLFVSTGLAYDVFGTPRPNEYF+QDRQQVPLVNDRFN  QE+ED T+GL
Sbjct:    3 GSTGERPFSDIITSIRYWIIHSITIPSLFVSGWLFVSTGLAYDVFGTPRPNEYFSQDRQQVPLVNDRFNAKQELEDLTKGL 83          
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: A0A6M3WCX6_COROI (Cytochrome b559 subunit alpha n=87 Tax=Florideophyceae TaxID=2806 RepID=A0A6M3WCX6_COROI)

HSP 1 Score: 159 bits (401), Expect = 6.660e-49
Identity = 70/84 (83.33%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 MSGGSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 84
            MSGGSTGER FSDIITS+RYW+IHSITIP+LF++GWLFVSTGLAYDVFGTPRPNEYF QDRQQVPLVNDRF+  QE+ED T+G+
Sbjct:   24 MSGGSTGERPFSDIITSIRYWVIHSITIPALFVAGWLFVSTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKGI 107          
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: PSBE_GUITH (Cytochrome b559 subunit alpha n=32 Tax=Eukaryota TaxID=2759 RepID=PSBE_GUITH)

HSP 1 Score: 158 bits (399), Expect = 6.670e-49
Identity = 70/84 (83.33%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 MSGGSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 84
            MSGGSTGER FSDIITS+RYWIIHSITIP+LF++GWLFVSTGLAYD+FGTPRPNEYF Q+RQQVPLVNDRF+  QE+ED T+GL
Sbjct:    1 MSGGSTGERPFSDIITSIRYWIIHSITIPALFVAGWLFVSTGLAYDIFGTPRPNEYFTQERQQVPLVNDRFSAKQELEDLTKGL 84          
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: D4NY69_GALSU (Cytochrome b559 subunit alpha n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=D4NY69_GALSU)

HSP 1 Score: 158 bits (399), Expect = 6.670e-49
Identity = 70/84 (83.33%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 MSGGSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 84
            M+GGSTGER FSDIITSVRYW+IHSITIP+LFI+GWLF STGLAYD+FGTPRPNEYF+ DR+QVPL+NDRFNV QE+ED TRGL
Sbjct:    1 MAGGSTGERPFSDIITSVRYWVIHSITIPALFIAGWLFTSTGLAYDIFGTPRPNEYFSNDREQVPLLNDRFNVKQELEDLTRGL 84          
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: A0A1C9CFD7_9FLOR (Cytochrome b559 subunit alpha n=3 Tax=Hildenbrandiaceae TaxID=31478 RepID=A0A1C9CFD7_9FLOR)

HSP 1 Score: 157 bits (398), Expect = 1.010e-48
Identity = 71/84 (84.52%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 MSGGSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 84
            MSGGSTGER FSDIITSVRYW+IHSITIPSLFI+GWLFVSTGLAYDVFGTPRP+EYF QDRQQVPL+NDRF+V QE+ED T+ +
Sbjct:    1 MSGGSTGERPFSDIITSVRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGTPRPDEYFTQDRQQVPLINDRFSVKQELEDLTKSI 84          
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: A0A3G1I9C5_9FLOR (Cytochrome b559 subunit alpha n=3 Tax=Batrachospermaceae TaxID=31371 RepID=A0A3G1I9C5_9FLOR)

HSP 1 Score: 158 bits (400), Expect = 1.250e-48
Identity = 70/84 (83.33%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 MSGGSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 84
            MSGGSTGER FSDIITS+RYW+IHSITIPSLFI+GWLF+STGLAYDVFGTPRPNEYF QDRQQVPLVNDRF+  QE+E+ T+G+
Sbjct:   33 MSGGSTGERPFSDIITSIRYWVIHSITIPSLFIAGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEELTKGI 116          
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: T1RIP1_9STRA (Cytochrome b559 subunit alpha n=5 Tax=Monodopsidaceae TaxID=425072 RepID=T1RIP1_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.640e-48
Identity = 71/81 (87.65%), Postives = 76/81 (93.83%), Query Frame = 0
Query:    4 GSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 84
            GSTGER FSDIITSVRYWIIHSITIPSLF+SGWLFV TGLAYDVFGTPRPNEYF+QDRQQVPLVNDRFN  QE++D T+GL
Sbjct:    3 GSTGERPFSDIITSVRYWIIHSITIPSLFVSGWLFVGTGLAYDVFGTPRPNEYFSQDRQQVPLVNDRFNAKQELDDLTKGL 83          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B9TNT0_SARFS7.450e-5597.62Cytochrome b559 subunit alpha n=16 Tax=Fucales Tax... [more]
PSBE_PHATC1.400e-5088.10Cytochrome b559 subunit alpha n=39 Tax=cellular or... [more]
PSBE_THAPS4.010e-5086.90Cytochrome b559 subunit alpha n=117 Tax=Eukaryota ... [more]
A0A0D3M5E1_9STRA3.200e-4988.89Cytochrome b559 subunit alpha n=6 Tax=Eukaryota Ta... [more]
A0A6M3WCX6_COROI6.660e-4983.33Cytochrome b559 subunit alpha n=87 Tax=Florideophy... [more]
PSBE_GUITH6.670e-4983.33Cytochrome b559 subunit alpha n=32 Tax=Eukaryota T... [more]
D4NY69_GALSU6.670e-4983.33Cytochrome b559 subunit alpha n=1 Tax=Galdieria su... [more]
A0A1C9CFD7_9FLOR1.010e-4884.52Cytochrome b559 subunit alpha n=3 Tax=Hildenbrandi... [more]
A0A3G1I9C5_9FLOR1.250e-4883.33Cytochrome b559 subunit alpha n=3 Tax=Batrachosper... [more]
T1RIP1_9STRA2.640e-4887.65Cytochrome b559 subunit alpha n=5 Tax=Monodopsidac... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006217Photosystem II cytochrome b559, alpha subunitPIRSFPIRSF000036Cytochrome_PsbEcoord: 1..84
e-value: 7.9E-51
score: 167.8
IPR006217Photosystem II cytochrome b559, alpha subunitTIGRFAMTIGR01332TIGR01332coord: 3..81
e-value: 4.4E-50
score: 165.6
IPR006217Photosystem II cytochrome b559, alpha subunitHAMAPMF_00642PSII_PsbEcoord: 1..82
score: 32.035519
IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyGENE3D1.20.5.860Photosystem II cytochrome b559, alpha subunitcoord: 3..84
e-value: 8.9E-47
score: 158.7
IPR013081Photosystem II cytochrome b559, N-terminalPFAMPF00283Cytochrom_B559coord: 7..35
e-value: 1.0E-15
score: 56.8
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionPFAMPF00284Cytochrom_B559acoord: 43..81
e-value: 1.8E-22
score: 78.8
NoneNo IPR availablePANTHERPTHR33391CYTOCHROME B559 SUBUNIT BETA-RELATEDcoord: 4..82
NoneNo IPR availablePANTHERPTHR33391:SF15CYTOCHROME B559 SUBUNIT ALPHAcoord: 4..82
NoneNo IPR availableSUPERFAMILY161045Cytochrome b559 subunitscoord: 4..83
IPR006216Photosystem II cytochrome b559, conserved sitePROSITEPS00537CYTOCHROME_B559coord: 15..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9038contigA-nodosum_M_contig9038:12715..12969 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9038.4.1mRNA_A-nodosum_M_contig9038.4.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9038 12715..12972 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9038.4.1 ID=prot_A-nodosum_M_contig9038.4.1|Name=mRNA_A-nodosum_M_contig9038.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=85bp
MSGGSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGT
PRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006217PSII_cyt_b559_asu
IPR037025PSII_cyt_b559_asu_sf
IPR013081PSII_cyt_b559_N
IPR013082PSII_cytb559_asu_lum
IPR006216PSII_cyt_b559_CS